BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478310
Length=2594
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09850.1 | Symbols: | D111/G-patch domain-containing protei... 3958 0.0
> AT3G09850.1 | Symbols: | D111/G-patch domain-containing protein
| chr3:3023211-3025851 REVERSE LENGTH=2641
Length=2641
Score = 3958 bits (2143), Expect = 0.0
Identities = 2461/2613 (94%), Gaps = 27/2613 (1%)
Strand=Plus/Plus
Query 1 CCAGAAATGGCAAACACACTAATAAAGAAGATCTGTGATTCTTCCTTTTGATTCATCGTC 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 5 CCAGAAATGGCAAACACACTAATAAAGAAGATCTGTGATTCTTCCTTTCGATTCATCGTC 64
Query 61 GTCTTCCCCCAAATTAGGGTTTTCTGGGAATTAGGTTAATTAAATTATGCGAGGCGGTGG 120
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 65 GTCTT-CCCCAAATTAGGGTTTTCTGGGAATTAGGTTGATTAAATTATGCGAGGCGGTGG 123
Query 121 TAGGAGAAGATCAAACGGTGGTGGTGGTTCTGGCAAAAGCAAGGCTAGATCTCCAGGACA 180
||||||||| ||||||||||||||| |||||||||||| |||||||| ||||||||||||
Sbjct 124 TAGGAGAAGGTCAAACGGTGGTGGTAGTTCTGGCAAAAACAAGGCTAAATCTCCAGGACA 183
Query 181 GAGCACGAGAACCAATCATAATTCCGCGGCGGGGTCTTCCTCCGGTGGTCGTCGCCGACG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 184 GAGCACGAGAACCAATCATAATTCCGCGGCGGGGTCTTCCTCCGGTGGTCGTCACCGACG 243
Query 241 TCAGAATAATACTACTCTGTTTGTCGAAGGAGGCATTCTCTCCGATTACCGAAAAGATCC 300
|||||||||||||||| ||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 244 TCAGAATAATACTACTTTGTTTGTTGAAGGAGGTATTCTCTCCGACTACCGAAAAGATCC 303
Query 301 GAACTTTTCGACGCCATCTCGTGGAGGAAGCTCTTCGGGAAAGGGATTGAAATATGGAAG 360
||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 304 TAACTTTTCGACGCCATCTCGTGGAGGAAGCTCTTCGGGAAAGGGATTGAGATCTAGAAG 363
Query 361 CACATATCGTGTAAAAGTTTCTGCTTCCATGAGTGGTCCAAGGAAATGCAGTGGTAATAC 420
|| | | |||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 364 CATAGAGCGTGTAAAAGCTTCTGCTTCCACGAGTGGTCCAAGGAAATGCAGTGGTAATAC 423
Query 421 TTATGTGTATCAGTATCCTTCCATTGATTTTGTGCAAGGGTTAGAGCGAAAAGCAGGCGT 480
|||||||||||| ||||||||||||||||||| | |||| || || |||| | |||| ||
Sbjct 424 TTATGTGTATCAATATCCTTCCATTGATTTTGAGGAAGGTTTGGATCGAAGATCAGGAGT 483
Query 481 TGAAAGTGATCAAATGGATGGTTCAAGTCCTA-TTGTGTTGGGGAAGTCAGAGGCGACTC 539
|||||||||||||||| || | |||||| | | |||||||||||||||||||||||||
Sbjct 484 TGAAAGTGATCAAATGAAT-G--AAAGTCC-ACTGGTGTTGGGGAAGTCAGAGGCGACTC 539
Query 540 AAGTTGTTGCATTTCTGGATCAAACGCCTTCGTCATCGAAAGGGATTAAGGTAAGTTATG 599
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AAATTGTTGCATTTCTGGATCAAACGCCTTCGTCATCGAAAGGGATTAAGGTAAGTTATG 599
Query 600 ATTACGAATACGAACCGAGTTTTGTTTTGGGTGATGATTCTCATAGAGGATTGGGATTTT 659
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 600 ATTACGAATACGAACCGAGTTACGTTTTGGGTGATGATTCTCATAAAGGATTGGGATTTT 659
Query 660 GTGATGATTCTGATGCTACACCAAGTGGTAGCCTTTCTATTCCAAAGGCATTGGGAGATC 719
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 660 GTGATGATTCTGATGCTACACCAAGTGGTAGCCTTTCTATTCCAAAGGCTTTGGGAGATC 719
Query 720 AAGGTGGTTCATTTTCCCCTGAGGAGGAAGTTGATGCTGTTGAGGAGTCTGGTGGAAATG 779
|||||||||||||||||| ||||||||| | |||||||||||| || |||||||||||||
Sbjct 720 AAGGTGGTTCATTTTCCCATGAGGAGGAGGGTGATGCTGTTGACGAATCTGGTGGAAATG 779
Query 780 ACGATGAAGTGATGCCTGATGTTGTGAAAACACCGAAAAGGAGGAATTCAGGTTTCATTT 839
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ACGATGAACTGATGCCTGATGTTGTGAAAACACCGAAAAGGAGGAATTCAGGTTTCATTT 839
Query 840 CTATAGGAGGGATGAAGTTATACACTGAAGATATATCTGGTGAAGAGAGTGAT-G-G-AG 896
||||||||||||||||||| |||||||||||| |||||||||||||||||||| | | ||
Sbjct 840 CTATAGGAGGGATGAAGTTGTACACTGAAGATGTATCTGGTGAAGAGAGTGATGGAGAAG 899
Query 897 AAGA-A-G-A-GATG--GATGATGATGAATCTGGAGATGAAGGCAGCACTAGATCTTCTG 950
|||| | | | |||| |||||||||||||||||||||||||| |||| | |||||||||
Sbjct 900 AAGAGATGAATGATGATGATGATGATGAATCTGGAGATGAAGGAAGCAGTGGATCTTCTG 959
Query 951 AATCATCCGAGAGTGACAGCTCGGAAGACATGTTTGGAAGTAATTCCGAGATTGATGATG 1010
||| ||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 960 AATTATCTGAGAGTGACAGCTCGGAAGATATGTTTGGAAGTTATTCCGAGATTGATGATG 1019
Query 1011 CTGTTGCAAAGGATTACTTGGAAGGTATTGGTGGCAGTGAGATTATGTTGGATGCTCATT 1070
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ATGTTGCCAAGGATTACTTGGAAGGTATTGGTGGCAGTGAGATTATGTTGGATGCTCATT 1079
Query 1071 GGTTGGCAGAACAGTCATTGGATAAATTGGATTTGTCAAGTGATGACAGTTCTTCAAGTG 1130
|||| ||||||||||| ||||||||||| |||||||| |||||||| ||||||||||| |
Sbjct 1080 GGTTAGCAGAACAGTCTTTGGATAAATTAGATTTGTCGAGTGATGATAGTTCTTCAAGCG 1139
Query 1131 ATTCTTCTGATCGAAAAACGAGAAAGTTGACTGGTATTCGTCTGCGAAAAGCTTCAATGG 1190
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1140 ATTCTTCGGATCGAAAAACGAGAAAGTTGACTGGTATTCGTCTGCAAAAAGCTTCAATGG 1199
Query 1191 AATATGGTAAGAAGAAGACGACAAGAAGTCGTTTCTCGGGGCATGGTAAGTCTACTAATC 1250
||||||||||||||||||| ||||||||| | | ||||||||||||||||||||||||||
Sbjct 1200 AATATGGTAAGAAGAAGACAACAAGAAGTGGCTACTCGGGGCATGGTAAGTCTACTAATC 1259
Query 1251 CATTGACAATGGATGATCTTATGTTTGTGAAGGATCCAAGAAGTCTTTCAGGGAAGAAGA 1310
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1260 CATTGGCAATGGATGATCTTATGTTTGTGAAGGATCCAAGAAGTCTTTCGGGGAAGAAGA 1319
Query 1311 ACAAGAAGAAAGATGTGGCTAAGTTTCCCCAGTCTTGGCCTTCAGGGGCACCAAAGAGCA 1370
| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1320 ATAAGAAGAAAGAGGTGGCTAAGTTTCCCCAGTCTTGGCCTTCACGGGCACCAAAGAGCA 1379
Query 1371 AGAATTCCCGCAATTTTCCTGGTGAGAAGAAGAAACACCGCAAAGAATACATTGCTGTGA 1430
|||||||||| | ||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1380 AGAATTCCCGTAGTTTTCCTGGTGAGAACAAGAAACACCGCAAAGAATACATTGCTTTGA 1439
Query 1431 AGCGCCGTGAGAGAATGCTGCAGCGTGGTGTTGATCTTGCTGATATTAACTCTCAATTAG 1490
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1440 AGCGCCGTGAGAGAATGCTGCAGCGTGGTGTTGATCTTGCTGATATTAATTCTCAGTTAG 1499
Query 1491 AGAGGTTTGTTCTGGAGAACGTGGACATGCACTGTTTCCAGCGTATGCATAATAGAGATT 1550
||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1500 AGAATTTTGTTCTGGAGAACGTGGACATGCACTGTTTCCAACGTATGCATAATCGAGATT 1559
Query 1551 GCTCTCAGGTAAGACGATTAGCAGATGTATATCGCTTATCAAGTAGCTGCAATGGTTCTG 1610
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1560 GCTCTCAGGTAAGACGATTAGCAGATGTCTACCGCTTATCAAGTAGCTGCAATGGTTCTG 1619
Query 1611 GAAAGAAAAGCTTTGTGACGGTGACTCGAACATATCAGACATGTATGCCATCTGCCAGCG 1670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 GAAAGAAAAGCTTTGTGACGGTGACTCGAACATATCAGACATGTATGCCATCTGCCAGCG 1679
Query 1671 ATAAACTTCGCATTGAGAAGCTAATAGGAGCAGGAGATGAGGATTATGATTTTGCTGTCA 1730
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1680 ATAAACTTCGCATTGAGAAGCTAATAGGAGCTGGAGATGAGGATTGTGATTTTGCTGTCA 1739
Query 1731 GTGGAGGGGTAAAAGGGAAATCGGGAAGTTTAGATAGGAAGAAAGCAAAAGACTCCGCCA 1790
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || |
Sbjct 1740 GTGGAGGGGTAAAAGGGAAATCTGGAAGTTTAGATAGGAAAAAAGCAAAAGACTCAGCTA 1799
Query 1791 AAAAGCGAACTACTAGAGAAGAACGGGAGAGAA-CTAAAAGCAATGGGAAGAAGAGTT-T 1848
|||||||| |||||||||| ||||||||||||| | |||||||||||||||||||||| |
Sbjct 1800 AAAAGCGACCTACTAGAGAGGAACGGGAGAGAAAC-AAAAGCAATGGGAAGAAGAGTTCT 1858
Query 1849 ATATGCTGATCAACCTGTATCGTTTGTTTCTAGTGGCATAATCGATTCTGAGATAGCTGT 1908
|||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 1859 -TATGCTGATCAACCTGTATCATTTGTGTCAAGTGGCATAATCGATTCTGAGATAGCTGT 1917
Query 1909 TGCAAAAACCTCAGTTGAAAAAGATGCAAAACAGGTAGCTGAAACTACTCCAGGAACCTC 1968
||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||
Sbjct 1918 TGCAAAAACCTCAGTTGAAAAAGTTGCAAAAGAGGTAGCTGAAACTACTCCGGGAACCTC 1977
Query 1969 TAATGGAGCAGACATTGGAGCATTTGAGGTACATACTAGAGGCTTTGGATCCAAAATGAT 2028
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1978 TAATGGAGCAGACATTGGAGCATTTGAGGTACATACCAGAGGTTTTGGATCCAAAATGAT 2037
Query 2029 GGCGAAAATGGGATTCATAGATGGAGGCGGTCTAGGAAAGGATGGTAAGGGGATAGCACA 2088
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2038 GGCTAAAATGGGATTCATAGATGGAGGTGGTCTAGGAAAGGATGGTAAGGGGATAGCACA 2097
Query 2089 GCCAATAGAAGCTGTTCAGCGTCCAAAATCACTTGGGTTAGGTCTGGATTTCAACATTGA 2148
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 2098 GCCAATAGAAGCTGTTCAGCGTCCGAAATCACTTGGGTTAGGTCTGGATTTCTCCATTGA 2157
Query 2149 CACTGAAGACCCGAGTCCGTCAAG------CAATAACAACGCTAAACGCAACAGATCGTC 2202
|||||||||||||||||||||||| |||||||||||||||||| |||||||| ||
Sbjct 2158 CACTGAAGACCCGAGTCCGTCAAGTAATAACAATAACAACGCTAAACGGAACAGATCTTC 2217
Query 2203 TTCCTCTGGGAAACATGTGAAACGCACCTCCCATGAAAATGGTGCCTCTGGTGCAGGAGG 2262
||||| |||||||||| |||||||| | ||||||| ||||||||||||||| ||||| |
Sbjct 2218 GTCCTCCGGGAAACATGGGAAACGCATCACCCATGACAATGGTGCCTCTGGTTCAGGAAG 2277
Query 2263 AATTAGAGACAAAAGATTGGGAGCCTTTGAGCAGCACACAACAGGCTTTGGGTCGAGGAT 2322
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2278 AATCAGGGACAAAAGATTGGGAGCCTTTGAGCAGCACACAACAGGCTTTGGGTCGAGGAT 2337
Query 2323 GATGGCGAGAATGGGTTTCGTCGAAGGCTCGGGTTTGGGAAGAGAGTCACAAGGCATAGT 2382
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 2338 GATGGCGAGAATGGGTTTCGTCGAAGGCTCGGGTCTGGGTAGAGAGTCACAAGGCATAGT 2397
Query 2383 CAATCCGCTGGTCGCTGTCAGACGTCCTAGAGCACGTGGAATAGGCGCTGAAGGCTAAAG 2442
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2398 CAATCCGCTGGTCGCTGTCAGACGTCCTAGAGCACGTGGAATAGGTGCTGAAGGCTAAAC 2457
Query 2443 ATTTAAGTATTTAACACTCAAGGTTTGAACAAGAACAGTAAGATATTGTTTT-AAGTATG 2501
||| ||||||||||| |||| |||||||||||||||||||||||| ||||| |||||||
Sbjct 2458 ATTGAAGTATTTAACGGTCAATGTTTGAACAAGAACAGTAAGATATCGTTTTTAAGTATG 2517
Query 2502 TTCATCTTCAATCTTCAACATGTGGCCTTTGTTCAATTTATGTTTCAAGACTTGGGAGCA 2561
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2518 TTCATCTTCAATCTTCAACATGTGGCCTTTGTTCAATTTATGTTT-AAGACTTGGGAGCA 2576
Query 2562 GCTTTGTTGTTATCTTGACATCAATGTTGTTGA 2594
|||||||||||||||||||||||||||||||||
Sbjct 2577 GCTTTGTTGTTATCTTGACATCAATGTTGTTGA 2609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128778542681
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5