BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478314 Length=857 Score E Sequences producing significant alignments: (Bits) Value AT3G09900.1 | Symbols: ATRABE1E, ATRAB8E, RABE1e | RAB GTPase h... 1327 0.0 AT5G03520.1 | Symbols: ATRAB8C, ATRABE1D, ATRAB-E1D, RAB-E1D, R... 808 0.0 > AT3G09900.1 | Symbols: ATRABE1E, ATRAB8E, RABE1e | RAB GTPase homolog E1E | chr3:3034557-3036593 FORWARD LENGTH=1001 Length=1001 Score = 1327 bits (718), Expect = 0.0 Identities = 819/866 (95%), Gaps = 14/866 (2%) Strand=Plus/Plus Query 1 TCTCCGGCGAGAAGAGATTTTCC-GGGGAAAATAGCATGAGCTCTCGGTTTTAGTTTGTG 59 ||||||||||||||||||||||| ||||||||||||| || |||||||||||||| || Sbjct 29 TCTCCGGCGAGAAGAGATTTTCCGGGGGAAAATAGCAAAAG--CTCGGTTTTAGTTTCTG 86 Query 60 TTTAGAAAGAGG--AC-G--TA--G----CTATTATCTTCTGTGATGGCGGTTGCGCCGG 108 |||||||||||| || | || | ||| ||||||| ||||||||||||||||| Sbjct 87 TTTAGAAAGAGGATACAGAATAGTGATTACTAACATCTTCTCCGATGGCGGTTGCGCCGG 146 Query 109 CAAGAGCTCGTTCAGACTATGATTACCTCATCAAGCTCCTCCTCATCGGCGATAGCGGTG 168 ||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||| Sbjct 147 CAAGAGCTCGTTCAGACTATGATTATCTCATCAAGCTTCTCCTCATCGGTGATAGCGGTG 206 Query 169 TGGGAAAAAGTTGCTTGTTACTGCGTTTCTCAGATGATACTTTTACCACGAGTTTCATTA 228 |||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||| Sbjct 207 TGGGAAAAAGTTGCTTGTTACTGCGTTTTTCGGATGATACTTTCACCACGAGTTTCATTA 266 Query 229 CTACCATTGGAATCGATTTCAAGATAAGAACAGTCGAACTTGATGGCAAGCGTATCAAAT 288 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 267 CTACCATTGGAATCGACTTCAAGATAAGAACAGTCGAACTTGATGGGAAGCGTATCAAAT 326 Query 289 TGCAGATTTGGGACACTGCTGGACAAGAACGTTTTAGAACTATAACTACAGCATATTACA 348 ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 327 TGCAGATATGGGACACTGCTGGACAAGAACGTTTTAGAACTATAACCACAGCATATTACA 386 Query 349 GAGGAGCTATGGGTATATTACTCGTCTATGATGTAACAGATGAGTCATCTTTCAACAACA 408 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 387 GAGGAGCGATGGGTATATTACTCGTCTATGATGTAACAGATGAGTCATCATTCAACAACA 446 Query 409 TTAGGAACTGGATGAAAAACATTGAGCAGCATGCGTCCGATAGTGTCAACAAAATATTGG 468 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 447 TTAGGAACTGGATGAAAAACATTGAGCAGCATGCGTCCGATAGTGTCAACAAGATATTGG 506 Query 469 TTGGTAACAAAGCCGACATGGACGAAAGCAAAAGGGCTGTCCCAACATCAAAGGGACAAG 528 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 507 TCGGTAACAAAGCCGACATGGACGAAAGCAAAAGGGCTGTCCCAACATCAAAAGGACAAG 566 Query 529 CTCTCGCTGATGAGTATGGAATCAAATTCTTTGAAACGAGTGCAAAAACAAACCAGAATG 588 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 567 CTCTTGCTGATGAGTATGGAATCAAATTCTTTGAGACGAGTGCAAAAACAAACCAGAATG 626 Query 589 TCGAGCAGGTTTTCCTTTCTATCGCAAAAGACATAAAACAAAGGCTCACAGAAAGCGATA 648 ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 627 TCGAGCAGGTTTTCCTTTCTATCGCTAAAGACATAAAACAAAGACTCACAGAAAGCGATA 686 Query 649 CAAAAGCCGAGCCCCAAGGGATCAAGATCACCAAACAAGATGCTAACAAAGCCTCATCGT 708 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 687 CAAAAGCCGAGCCCCAAGGGATCAAGATCACTAAACAAGATGCTAACAAAGCCTCATCGT 746 Query 709 CTTCTACAACTGAGAAATCAGCTTGCTGCAGTTATGTTTAGAAGTTCTCTGGACCTGTTT 768 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 747 CTTCTACAAATGAGAAATCAGCTTGCTGCAGTTATGTTTAGAAGTTCTCTGAACCTGTTT 806 Query 769 CTAATCTTTTACCGTCGTTAATCTTATTCGCATCATTCAAGAGATCGTCCTATGTTCTTA 828 ||||||| |||||||| |||||||| ||||||||||||||| |||||||||||||||||| Sbjct 807 CTAATCTCTTACCGTCTTTAATCTTCTTCGCATCATTCAAGGGATCGTCCTATGTTCTTA 866 Query 829 TTAGTAGGAGGATAGACTTAATTGAT 854 |||||||||||||||||||||||||| Sbjct 867 TTAGTAGGAGGATAGACTTAATTGAT 892 > AT5G03520.1 | Symbols: ATRAB8C, ATRABE1D, ATRAB-E1D, RAB-E1D, RAB8C | RAB GTPase homolog 8C | chr5:883447-885425 FORWARD LENGTH=1150 Length=1150 Score = 808 bits (437), Expect = 0.0 Identities = 593/669 (89%), Gaps = 7/669 (1%) Strand=Plus/Plus Query 86 TTCTG-TGATGGCGGTTGCGCCGGCAAGAGCTCGTTCAGACTATGATTACCTCATCAAGC 144 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 225 TTCTGACGATGGCGGTTGCGCCGGCAAGAGCTCGTTCAGACTATGATTACCTCATCAAGC 284 Query 145 TCCTCCTCATCGGCGATAGCGGTGTGGGAAAAAGTTGCTTGTTACTGCGTTTCTCAGATG 204 | || ||||||||||||||||||||||| || ||||| |||||||| || |||||||||| Sbjct 285 TTCTTCTCATCGGCGATAGCGGTGTGGGGAAGAGTTGTTTGTTACTTCGATTCTCAGATG 344 Query 205 ATACTTTTACCACGAGTTTCATTACTACCATTGGAATCGATTTCAAGATAAGAACAGTCG 264 ||||||| || || |||||||||||||||||||| || || |||||||||||||| || | Sbjct 345 ATACTTTCACTACAAGTTTCATTACTACCATTGGTATTGACTTCAAGATAAGAACTGTTG 404 Query 265 AACTTGATGGCAAGCGTATCAAATTGCAGATTTGGGACACTGCTGGACAAGAACGTTTTA 324 |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 405 AACTTGATGGGAAGCGTATCAAATTGCAGATTTGGGACACTGCTGGTCAAGAACGTTTCA 464 Query 325 GAACTATAACTACAGCATATTACAGAGGAGCTATGGGTATATTACTCGTCTATGATGTAA 384 ||||||| |||||||| |||||||| ||||| ||||||||||| || ||||| ||||||| Sbjct 465 GAACTATCACTACAGCGTATTACAGGGGAGCGATGGGTATATTGCTTGTCTACGATGTAA 524 Query 385 CAGATGAGTCATCTTTCAACAACATTAGGAACTGGATGAAAAACATTGAGCAGCATGCGT 444 | |||||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||| | Sbjct 525 CGGATGAGTCATCTTTTAACAATATTAGGAACTGGATGAAGAACATTGAGCAACATGCCT 584 Query 445 CCGATAGTGTCAACAAAATATTGGTTGGTAACAAAGCCGACATGGACGAAAGCAAAAGGG 504 | |||| |||||||||||||||||||||||||||||| || ||||| ||||||||||||| Sbjct 585 CAGATAATGTCAACAAAATATTGGTTGGTAACAAAGCTGATATGGATGAAAGCAAAAGGG 644 Query 505 CTGTCCCAACATCAAAGGGACAAGCTCTCGCTGATGAGTATGGAATCAAATTCTTTGAAA 564 |||| |||||| ||||||| |||||| | ||||||||||||||||||||||||||||| | Sbjct 645 CTGTTCCAACAGCAAAGGGCCAAGCTTTGGCTGATGAGTATGGAATCAAATTCTTTGAGA 704 Query 565 CGAGTGCAAAAACAAACCAGAATGTCGAGCAGGTTTTCCTTTCTATCGCAAAAGACATAA 624 |||||||||||||||||| |||||||| | |||||| | || |||||||||||||||| Sbjct 705 CGAGTGCAAAAACAAACCTCAATGTCGAAAATGTTTTCATGTCAATCGCAAAAGACATAA 764 Query 625 AACAAAGGCTCACAGAAAGCGATACAAAAGCCGAGCCCCAAGGGATCAAGATCACCAAAC 684 ||||||| | ||||||| ||| || || || ||||||||||| ||||||||||| |||| Sbjct 765 AACAAAGATTGACAGAAACCGACACGAAGGCAGAGCCCCAAGGCATCAAGATCACTAAAC 824 Query 685 AAGATGCTAACAAAGCCTCATCGTCTTCTACAACTGAGAAATCAGCTTGCTGCAGTTATG 744 ||||| || ||| |||||||||||||| | ||||| ||||||||||| ||||| | Sbjct 825 AAGATACT------GCCGCATCGTCTTCTACAGCCGAGAAGTCAGCTTGCTGTAGTTACG 878 Query 745 TTTAGAAGT 753 ||||| ||| Sbjct 879 TTTAGGAGT 887 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41794810304 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5