BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478348 Length=1953 Score E Sequences producing significant alignments: (Bits) Value AT3G10230.1 | Symbols: LYC | lycopene cyclase | chr3:3164075-31... 3046 0.0 AT3G10220.1 | Symbols: | tubulin folding cofactor B | chr3:316... 222 9e-57 > AT3G10230.1 | Symbols: LYC | lycopene cyclase | chr3:3164075-3166038 REVERSE LENGTH=1964 Length=1964 Score = 3046 bits (1649), Expect = 0.0 Identities = 1866/1969 (95%), Gaps = 21/1969 (1%) Strand=Plus/Plus Query 1 CTCTCTCTCTGGGAAGAAGATAATTGTCTCCATCTCCATGAAGCTTCTGCTTCTGGGTAA 60 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1 CTCTCTTTCTGGGAAGAAGATAATTGTCTCCATCTCCATGAAGCTACTGCTTCTGGGTAA 60 Query 61 GTTTTGTGGTCTTCGTTCATCTTTTCTCTAG------AG-ATTTCATATTCGCAATCCCT 113 ||||||||||||||||||||||||||||||| || ||| ||| ||| |||||||| Sbjct 61 GTTTTGTGGTCTTCGTTCATCTTTTCTCTAGCAATTTAGTATTCCATTTTCTCAATCCCT 120 Query 114 CTGGTTAGAAATCGTGTCTGGTGATTTTTGAATTATATCCTTTT-G-G------T-GATT 164 |||||||||||||||||| ||||||||||||||||||||||||| | | | |||| Sbjct 121 CTGGTTAGAAATCGTGTCCGGTGATTTTTGAATTATATCCTTTTGGTGTTTTCTTCGATT 180 Query 165 TTGGGGGAATTCGATGGATACTCTGTTGAAAACACCCAACAAGCTCGATTTTTTCATCCC 224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTGGGGGAATTCGATGGATACTCTGTTGAAAACACCCAACAAGCTCGATTTTTTCATCCC 240 Query 225 TCAGTTTCATGGGTTTGAGAGATTAAGCAGTAATAATCCAAACCCTGCAAGGGTTAGGCT 284 ||||||||||||||||||||||||| ||||||| |||||| ||| | ||||||||||||| Sbjct 241 TCAGTTTCATGGGTTTGAGAGATTATGCAGTAACAATCCATACCATTCAAGGGTTAGGCT 300 Query 285 TGGTCTGAAGAAAAGGGCTATCAAAATTGGCTCTAGTGTTGCCAGTGGTAGTGCTGCTCT 344 |||| |||||||||||||||||||||||| ||||||||| | |||||||| |||||||| Sbjct 301 TGGTGTGAAGAAAAGGGCTATCAAAATTGTCTCTAGTGTAGTGAGTGGTAGCGCTGCTCT 360 Query 345 TTTGGATCTTGTTCCTGAAACTAAGAAGGAGAATCTTGACTTCGAGCTTCCTTTGTACGA 404 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 361 TTTGGATCTTGTTCCTGAAACTAAGAAGGAGAATCTTGACTTTGAGCTTCCTTTGTACGA 420 Query 405 CACTTCCAAGAGTCAAGTTGTTGATTTGGCTATTGTTGGTGGTGGTCCTGCTGGTTTAGC 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CACTTCCAAGAGTCAAGTTGTTGATTTGGCTATTGTTGGTGGTGGTCCTGCTGGTTTAGC 480 Query 465 TGTGGCTCAGCAGGTTTCTGAGGCTGGACTCTCTGTTTGTTCCATTGATCCTTCTCCAAA 524 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 481 CGTGGCTCAGCAGGTTTCTGAAGCTGGACTCTCTGTTTGTTCCATTGATCCTTCTCCTAA 540 Query 525 GCTCATATGGCCTAACAACTATGGAGTTTGGGTTGATGAGTTTGAGGCTATGGATTTACT 584 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GCTCATATGGCCTAACAATTATGGAGTTTGGGTTGATGAGTTTGAGGCTATGGATTTACT 600 Query 585 AGATTGCTTAGACACCACATGGTCTGGTGCTGTTGTCTATGTCGATGAAGGTGTCAAGAA 644 ||| ||| | || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 AGACTGCCTGGATACCACATGGTCTGGTGCTGTTGTCTATGTCGATGAAGGTGTCAAGAA 660 Query 645 GGATTTAAGCCGGCCTTATGGGAGAGTTAACCGGAAACAGCTCAAATCCAAAATGCTTCA 704 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 GGATTTGAGCCGGCCTTATGGGAGAGTTAACCGGAAACAGCTCAAATCCAAAATGCTTCA 720 Query 705 GAAATGTATTACCAACGGTGTTAAGTTTCATCAGTCTAAGGTCACTAACGTGGTTCACGA 764 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 721 GAAATGTATTACCAACGGTGTTAAATTTCATCAGTCTAAGGTCACTAATGTGGTTCACGA 780 Query 765 GGAGGCAAACTCCACTGTGGTTTGCAGCGACGGTGTGAAGATTCAGGCTTCGGTGGTTCT 824 ||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||||| Sbjct 781 GGAGGCAAACTCCACTGTGGTCTGCAGTGACGGTGTAAAGATTCAGGCTTCCGTGGTTCT 840 Query 825 TGATGCCACCGGGTTTTCCCGATGCTTGGTTCAGTATGACAAACCGTACAACCCTGGGTA 884 ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 841 TGATGCCACTGGGTTTTCCCGATGCTTGGTTCAGTATGACAAACCTTACAACCCTGGGTA 900 Query 885 CCAAGTAGCTTACGGGATTATAGCTGAAGTCGATGGTCACCCTTTCGATGTAGACAAAAT 944 ||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| Sbjct 901 CCAAGTAGCTTACGGGATTGTAGCTGAAGTTGATGGTCACCCATTCGATGTAGACAAAAT 960 Query 945 GGTGTTCATGGATTGGAGAGACAGACATCTGGACTCATATCCTGAGCTTAAAGAACGGAA 1004 ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 961 GGTGTTCATGGATTGGAGAGACAAACATCTGGACTCATATCCTGAGCTGAAAGAACGGAA 1020 Query 1005 CAGCAAGATCCCAACATTCTTGTACGCGATGCCGTTTTCTTCCAACCGAATATTTCTTGA 1064 ||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 1021 CAGCAAGATCCCAACGTTCTTGTACGCTATGCCATTTTCTTCCAACCGAATATTTCTTGA 1080 Query 1065 AGAAACTTCTTTAGTTGCTAGACCTGGTCTGCGTATGGACGATATCCAAGAAAGAATGGC 1124 ||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||| Sbjct 1081 AGAAACTTCTTTAGTTGCTAGACCTGGTCTGAGAATGGAAGATATCCAAGAAAGAATGGC 1140 Query 1125 TGCTAGACTGAAACATTTGGGGATCAATGTGAAGAGGATTGAGGAAGACGAGCGTTGTGT 1184 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1141 TGCTAGACTGAAACATCTGGGGATCAATGTGAAGAGGATTGAGGAAGACGAGCGTTGTGT 1200 Query 1185 GATCCCAATGGGCGGTCCTTTACCAGTCTTACCTCAACGAGTTGTCGGGATTGGTGGGAC 1244 |||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 1201 GATCCCGATGGGCGGTCCTTTACCAGTCTTACCTCAACGGGTTGTGGGGATTGGTGGGAC 1260 Query 1245 AGCGGGAATGGTTCATCCCTCAACTGGTTACATGGTAGCTAGGACTCTTGCAGCTGCGCC 1304 ||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| || Sbjct 1261 AGCAGGAATGGTTCATCCTTCAACTGGTTACATGGTTGCTAGGACTCTTGCAGCTGCACC 1320 Query 1305 AATAGTTGCAAACGCCATTGTGAGATACCTCGGTTCACCGAGTAGTAACAGCCTAAGAGG 1364 |||||||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||| Sbjct 1321 AATAGTTGCAAATGCCATTGTGAGATACCTCGGTTCACCAAGTAGTAATAGCCTGAGAGG 1380 Query 1365 AGATCAACTCTCTGCTGAGGTATGGAGAGACTTGTGGCCTATTGAACGGCGCAGACAGAG 1424 ||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| Sbjct 1381 AGATCAACTCTCTGCTGAGGTTTGGAGAGACTTGTGGCCTATCGAACGGCGTAGACAGAG 1440 Query 1425 GGAATTCTTCTGTTTTGGAATGGATATTCTGCTGAAACTCAACTTAGACGCTACTAGAAG 1484 ||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 1441 GGAGTTCTTCTGTTTTGGAATGGATATTCTGCTGAAACTCGATTTAGACGCTACTAGAAG 1500 Query 1485 GTTCTTTGATGCATTCTTTGATCTGCAACCTCATTACTGGCACGGATTCTTGTCTTCCAG 1544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1501 GTTCTTTGATGCATTCTTTGATCTGCAACCTCATTACTGGCACGGATTCTTGTCTTCCAG 1560 Query 1545 GCTGTTTCTCCCGGAACTGTTGTTCTTTGGGTTGTCGCTCTTCTCGCATGCTTCTAATAC 1604 |||||||||||||||||||||| |||| ||||||||||||||||| || ||||| ||||| Sbjct 1561 GCTGTTTCTCCCGGAACTGTTGGTCTTCGGGTTGTCGCTCTTCTCACACGCTTCCAATAC 1620 Query 1605 CTCAAGATTGGAGATCATGACAAAGGGGACTGTTCCTCTTGCTAAGATGATCAACAATTT 1664 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1621 CTCAAGATTGGAGATCATGACAAAGGGGACTGTTCCTCTTGCTAAGATGATCAACAATTT 1680 Query 1665 GGTACAAGATAGAGACTAAGGACCAGAAACTTAGACATATAAGTACATCTGTTCTTTGGT 1724 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1681 GGTACAAGATAGAGACTAAGGACCAGAAACTTAGACATATAAGTACATCTGTTCTTTGGT 1740 Query 1725 TCTTGACCCAGTGGTATATCCGCATTGCAAGTCGTCGCATAATTGTGTATAAACCGCAGA 1784 |||||||| ||| |||||||||||||||||||||| | ||||||||||||||||| |||| Sbjct 1741 TCTTGACC-AGTAGTATATCCGCATTGCAAGTCGTTGGATAATTGTGTATAAACCACAGA 1799 Query 1785 TCATAACCTGAATCCTTGTGAAATCAAAGTGTTACTAGTTATTCTTCATTAAAATTAATA 1844 |||||||||||||||||||||||||||| |||||||| | | | | |||||||||||||| Sbjct 1800 TCATAACCTGAATCCTTGTGAAATCAAATTGTTACTACT-AGT-T-CATTAAAATTAATA 1856 Query 1845 TTTTGTGCTGCATCGTGTTTTCACCAACTCTTGTAAATCCAAAACTAGAGGCAAAATGTA 1904 |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1857 CTTTGTGCTGCATTGTGTTT-CACCAACTCTTGTAAATCCAAAACTAGAGGCAAAATGTA 1915 Query 1905 ATAAGATAAAAGAATTGATGTTGAACACAAAAGCAACTCTTTCAAACTC 1953 ||||||||||||| | ||| |||||||||||||||| |||||||||||| Sbjct 1916 ATAAGATAAAAGAGTGGATTTTGAACACAAAAGCAAATCTTTCAAACTC 1964 > AT3G10220.1 | Symbols: | tubulin folding cofactor B | chr3:3161757-3164231 FORWARD LENGTH=1058 Length=1058 Score = 222 bits (120), Expect = 9e-57 Identities = 148/161 (92%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 1793 TGAATCCTTGTGAAATCAAAGTGTTACTAGTTATTCTTCATTAAAATTAATATTTTGTGC 1852 |||||||||||||||||||| |||||||| || |||||||||||||||| ||||||| Sbjct 1058 TGAATCCTTGTGAAATCAAATTGTTACTA-CTA--GTTCATTAAAATTAATACTTTGTGC 1002 Query 1853 TGCATCGTGTTTTCACCAACTCTTGTAAATCCAAAACTAGAGGCAAAATGTAATAAGATA 1912 ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1001 TGCATTGTG-TTTCACCAACTCTTGTAAATCCAAAACTAGAGGCAAAATGTAATAAGATA 943 Query 1913 AAAGAATTGATGTTGAACACAAAAGCAACTCTTTCAAACTC 1953 ||||| | ||| |||||||||||||||| |||||||||||| Sbjct 942 AAAGAGTGGATTTTGAACACAAAAGCAAATCTTTCAAACTC 902 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 96736450215 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5