BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478371
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10405.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1376 0.0
> AT3G10405.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: pollen development; LOCATED
IN: chloroplast; Has 44 Blast hits to 44 proteins in 20
species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0;
Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI
BLink). | chr3:3233715-3235289 REVERSE LENGTH=1073
Length=1073
Score = 1376 bits (745), Expect = 0.0
Identities = 929/1015 (92%), Gaps = 23/1015 (2%)
Strand=Plus/Plus
Query 1 TAATAAACTGGTTTTGATGCGGTTTCTGTACATGACACATGGCAAAACATGATTGGCTCC 60
|||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 57 TAATGAACAGGTTTTGATGCGGTTTATGTACATGACACATGGCAAAACATGATTGGCTAC 116
Query 61 AGGAACGATTTTATCTAACAAGCAAGATAGAGATGAGATTAGGAGACAAGGAGCAATGTC 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 ATGAACGATTTTATCTAACAAGCAAGATAGAGATGAGATTAGGAGACAAGGAGCAATGTC 176
Query 121 GATTTCTTCGTTGGGGTCTGCAATCTCAAGGCCAACTTCTTCATCATCTTCATATACCTA 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 177 GATTTCTTCGTTGGGGTCTGCAATCTCAAAGCCAACTTCTTCATCATCTTCATATACGTA 236
Query 181 CTTAGTAAGCTCTTCTCGCATCTTTGGGCTCGCTACGTCTTCTTTGTTATGGACAAAGAA 240
||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 237 CTTAGGAAGCTCTTCTCGCATCTTTGGGCTAGTTACGTCTTCTTTGTTATGGACAAAGAG 296
Query 241 CAAATCTCACCACACAAACACAAAGCTTAAGCAGCAAAAGCCATGTGTTAGAAATTCAGC 300
|||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||
Sbjct 297 TAAATCTCACCACACAAACACAAAGCTCAAGAAGCAAAAGCTATGTGTTAGAAATTCAGC 356
Query 301 TCAAGAGATTCCACAGACACTTGAGGAAGATTCCAAGTTTGTACCTTTAGATCCTCAAGA 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TCAAGAGATTCCAAAGACACTTGAGGAAGATTCCAAGTTTGTACCTTTAGATCCTCAAGA 416
Query 361 TCCTCGATTCGGCCCTCCAGTTTTGCTGTTGCTTGGCCTTCAACTTCATGAAGCACAAAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TCCTCGATTCGGCCCTCCAGTTTTGCTGTTGCTTGGCCTTCAACTTCATGAAGCACAAAA 476
Query 421 GATACAAGAGCTTCTTAAGGAACTTGATGGCGAATTCATGGAGATTGTTTTCTGTACAGA 480
||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 477 GATACAAGAACTTCTCAAGGAACTCGATGGCGAATTCATGGAGATTGTGTTCTGTACAGA 536
Query 481 AGATATGATCCCA-CGCTCGTTATGGGAAGCAGTTAACACAAAACAGCCTGACCTGAACA 539
||||||||| | || ||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 537 CGATATGATCA-AGCGTTCGTTATGGGAAGCAGTTACCACAAAACAGCCTGACCTGAAGA 595
Query 540 GAGTGAATGTCGCG-AAGTCGCTTCCTCGGATATGCTTTTTATCTGGTTTGACAGGAGAG 598
||||||| ||||| || || || |||||||| ||||| |||||||||||||||||||||
Sbjct 596 GAGTGAAAATCGCGGAA-TCACTGCCTCGGATCTGCTTCTTATCTGGTTTGACAGGAGAG 654
Query 599 GAGATGATGATGTTCATTGATGCATTTCCC-GAAACTGGGCTAGAACCCGTTGTGTTTGC 657
|||||||||||||||||||||||||| ||| ||||||||||| ||||| |||||||||||
Sbjct 655 GAGATGATGATGTTCATTGATGCATT-CCCAGAAACTGGGCTGGAACCAGTTGTGTTTGC 713
Query 658 AGCTATGGTTCCGAACAGTGCTGATAAACCTATCTTTGAGTTAATTGAAGAAATCATGGG 717
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 714 AGCTATGGTTCCGAACAGTGCTGATAAACCTATCTTTGAGTTAACTGAAGAAATCATGGG 773
Query 718 AGATCATGAGTTATTGACTGGGAGCGGTTCCAGCTGAAATTTTTGAGTGAGGAAGACAAC 777
||||||||||||| |||| |||||| ||||||||||||| |||||||||||||||||| |
Sbjct 774 AGATCATGAGTTACTGACCGGGAGCAGTTCCAGCTGAAAGTTTTGAGTGAGGAAGACAGC 833
Query 778 AGAACAGCTTTAAAAGTCTTCAGGTTTCTGCAACATGACGCTAAAGATTTTATGCATTAC 837
|| |||||||||||| ||||||||||||||||||| ||| || |||| ||| ||||||||
Sbjct 834 AGGACAGCTTTAAAATTCTTCAGGTTTCTGCAACAAGACTCTTAAGACTTTGTGCATTAC 893
Query 838 CCAAAGTATATTGTACAAGAGTGTAGTCTTCCAATGAAAAAGTAAGATGCACAAGAATGC 897
|||||||||||||||||| |||| ||||||| ||| ||||||| || |||||||||||||
Sbjct 894 CCAAAGTATATTGTACAACAGTGCAGTCTTCAAATAAAAAAGTGAGCTGCACAAGAATGC 953
Query 898 AATGATCAAATTAAGAACTGACACAAGTT-TC--ACT-----TGGA-CA-CA-T---ACC 943
||| | |||||||||||| ||||||||| | | | || | | || | ||
Sbjct 954 AATCAG-AAATTAAGAACTTACACAAGTTATATGAGTCAAAATGTAACTTCACTTGGACA 1012
Query 944 CA-C-AGTCACCAAACAAATGTAAAATGAAGACAAAACCAAATCAATCTCTTTTT 996
| | ||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1013 TATCCAGTCATCAAACAAATGTAAAATGAAGACGAAACCAAATCAATCTCTTTTT 1067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48777356737
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5