BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478427 Length=1008 Score E Sequences producing significant alignments: (Bits) Value AT3G10912.1 | Symbols: CPuORF63 | conserved peptide upstream op... 1352 0.0 AT3G10910.1 | Symbols: | RING/U-box superfamily protein | chr3... 1352 0.0 > AT3G10912.1 | Symbols: CPuORF63 | conserved peptide upstream open reading frame 63 | chr3:3412911-3414019 REVERSE LENGTH=1109 Length=1109 Score = 1352 bits (732), Expect = 0.0 Identities = 942/1033 (91%), Gaps = 56/1033 (5%) Strand=Plus/Plus Query 1 AGAGTCGCCCATAAATTCATTTATGACTCTTTTTTATCACAATCTTGACATAAATATTTT 60 ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| Sbjct 107 AGAGTCGCCCATAAATTCATTTATGACTC-CTTTTATCACAATCTTGCCATAAATATTTT 165 Query 61 TGCCTCC-CCTCATCTTTACACACAAGTCACGACTCACGAGACAGAAACAAATCAGaaaa 119 ||||||| || ||||||||||||||||||||| | | || |||| |||||||| || Sbjct 166 TGCCTCCTCC-CATCTTTACACACAAGTCACG----A-G-GA-AGAAGCAAATCAG--AA 215 Query 120 aaaGATCAAAGCTCAGAAATGAAGAGTGCAGAGATTAATTAATTGAGAGTTTTTTAAGAA 179 |||||||||||||||||||| |||||| |||||||||||| ||| |||| |||||||||| Sbjct 216 AAAGATCAAAGCTCAGAAATAAAGAGTACAGAGATTAATTCATTAAGAG-TTTTTAAGAA 274 Query 180 CATGAGGGTGAGGGATATCGATTCTCTCTTGTCCATCTCTTTTGTCATTCGATTTGACCA 239 | | |||||||||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct 275 C---A---TGAGGGATATCGATTCTCTCTTCTCCATCTCTTTTGTCATTCGATTTGTCCA 328 Query 240 AC-A-ACGA--CACGAATCTTGAAG-G-TGAAG---------T--TTCTCTCCTCTGCTT 282 || | |||| | ||| ||||| | | ||| | ||||||||||||||| Sbjct 329 ACAAGACGAGTCTTGAA-GGTGAAGTGATCAAGCTTTTTTTTTCCTTCTCTCCTCTGCTT 387 Query 283 CTCAAGCGTACCTCAAAAGATGGGTCGGTTGCTACTTGAGCCACAAGCAAACGCACCCGC 342 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 388 CTCAAGCGTACCTCAAAAGATGGGTCGGTTGCTACTTGAGCCGCAAGCAAACGCACCCGC 447 Query 343 CGACGCAAACCCTAAACCCAAAGGAGGCATAAACGATACCTACTTCGACACTAACATGGT 402 | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 448 CAACGCAAACCCTAAACCCAAAGGAGGCATAAACGACACCTACTTCGACACTAACATGGT 507 Query 403 CATCATTTTAGCTGCTTTACTCTGCGCTTTAATCTGTGCTCTAAGCCTCAACTCTGCCTT 462 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 508 TATCATTTTAGCTGCTTTACTCTGCGCTTTAATCTGTGCTCTAAGCCTCAACTCTGCCTT 567 Query 463 GCGATGTGTGCTACGCATAACTCGGAGATTCACTTCGGATGATCAAGTCGCAAACGCTTC 522 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 568 GCGATGTGTGCTACGCATAACTCGGAGATTCACTTCGGATGATCAAGTCTCAAACGCTTC 627 Query 523 AAACGCAAACGCAAATTCAAGACGTTTAGCGGCTACCACAGGG-CTCAAGAAACAGGCGT 581 ||||||||||||||||| |||||||||||||| |||| ||| |||||||||||||||| Sbjct 628 AAACGCAAACGCAAATTTGGGACGTTTAGCGGCTGCCAC-GGGTCTCAAGAAACAGGCGT 686 Query 582 TGAAACAAATCCCCGTGGGATTGTACGGATCAGGAATCATTGACATGAAAGCTACGGAGT 641 |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 687 TGAAACAAATCCCCGTGGGACTGTACGGATCAGGAATCATAGACATGAAAGCTACGGAGT 746 Query 642 GTTTGATCTGTCTCGGAGATTTCGAAGACGGGGAAAAAGTTAGGGTTTTGCCTAAATGTA 701 ||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||||| Sbjct 747 GTTTGATCTGTCTGGGAGATTTCGAAGATGGAGAAAAAGTTAGGGTTTTACCTAAATGTA 806 Query 702 ACCATGGCTTCCACGTGAGGTGCATCGATACTTGGTTGCTCTCACGTTCCTCTTGCCCCA 761 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 807 ACCATGGCTTCCACGTGAGGTGCATCGATACTTGGTTGCTCTCACGTTCCTCTTGCCCCA 866 Query 762 CTTGTAGACAATCGATACTCCTTGATGAGCAGCCGTCGCCGATGGCTGTTTCCCGGCGGG 821 |||||||||||||| |||||||||| | ||||| ||||||||||||||||||||||||| Sbjct 867 CTTGTAGACAATCGCTACTCCTTGA-G--CAGCCTTCGCCGATGGCTGTTTCCCGGCGGG 923 Query 822 ACGAGGACATGGTAGTTTCCATCGTATAGGGACATGAT-GGTGATTTCTTAACTATGCTC 880 |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 924 ACGAGGACATGGTAGTTTCCATCGTATAGGGACATGATCGGTGATTTCTTAATTATGCTC 983 Query 881 TCTCAAGTGGGCTTGGTTTTTGTTGGTTGGTTTCATAATTGtttttttGTGTGTGCAAAC 940 |||||||||||||||||||||||||||||| | | |||||| | |||||||||||| Sbjct 984 TCTCAAGTGGGCTTGGTTTTTGTTGGTTGG----A-A-TTGTTTGT--GTGTGTGCAAAC 1035 Query 941 TAATGTGATT-ATTTACACATATTCTTGTTCTGGTGAATTTA----GTGTGATGGGTTTT 995 |||||||||| |||| ||||||||||||||||| |||||||| |||||||||||||| Sbjct 1036 TAATGTGATTTATTTTCACATATTCTTGTTCTGATGAATTTAATTAGTGTGATGGGTTTT 1095 Query 996 CTTGAAATCAAGC 1008 ||||||||||||| Sbjct 1096 CTTGAAATCAAGC 1108 > AT3G10910.1 | Symbols: | RING/U-box superfamily protein | chr3:3412911-3414019 REVERSE LENGTH=1109 Length=1109 Score = 1352 bits (732), Expect = 0.0 Identities = 942/1033 (91%), Gaps = 56/1033 (5%) Strand=Plus/Plus Query 1 AGAGTCGCCCATAAATTCATTTATGACTCTTTTTTATCACAATCTTGACATAAATATTTT 60 ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| Sbjct 107 AGAGTCGCCCATAAATTCATTTATGACTC-CTTTTATCACAATCTTGCCATAAATATTTT 165 Query 61 TGCCTCC-CCTCATCTTTACACACAAGTCACGACTCACGAGACAGAAACAAATCAGaaaa 119 ||||||| || ||||||||||||||||||||| | | || |||| |||||||| || Sbjct 166 TGCCTCCTCC-CATCTTTACACACAAGTCACG----A-G-GA-AGAAGCAAATCAG--AA 215 Query 120 aaaGATCAAAGCTCAGAAATGAAGAGTGCAGAGATTAATTAATTGAGAGTTTTTTAAGAA 179 |||||||||||||||||||| |||||| |||||||||||| ||| |||| |||||||||| Sbjct 216 AAAGATCAAAGCTCAGAAATAAAGAGTACAGAGATTAATTCATTAAGAG-TTTTTAAGAA 274 Query 180 CATGAGGGTGAGGGATATCGATTCTCTCTTGTCCATCTCTTTTGTCATTCGATTTGACCA 239 | | |||||||||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct 275 C---A---TGAGGGATATCGATTCTCTCTTCTCCATCTCTTTTGTCATTCGATTTGTCCA 328 Query 240 AC-A-ACGA--CACGAATCTTGAAG-G-TGAAG---------T--TTCTCTCCTCTGCTT 282 || | |||| | ||| ||||| | | ||| | ||||||||||||||| Sbjct 329 ACAAGACGAGTCTTGAA-GGTGAAGTGATCAAGCTTTTTTTTTCCTTCTCTCCTCTGCTT 387 Query 283 CTCAAGCGTACCTCAAAAGATGGGTCGGTTGCTACTTGAGCCACAAGCAAACGCACCCGC 342 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 388 CTCAAGCGTACCTCAAAAGATGGGTCGGTTGCTACTTGAGCCGCAAGCAAACGCACCCGC 447 Query 343 CGACGCAAACCCTAAACCCAAAGGAGGCATAAACGATACCTACTTCGACACTAACATGGT 402 | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 448 CAACGCAAACCCTAAACCCAAAGGAGGCATAAACGACACCTACTTCGACACTAACATGGT 507 Query 403 CATCATTTTAGCTGCTTTACTCTGCGCTTTAATCTGTGCTCTAAGCCTCAACTCTGCCTT 462 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 508 TATCATTTTAGCTGCTTTACTCTGCGCTTTAATCTGTGCTCTAAGCCTCAACTCTGCCTT 567 Query 463 GCGATGTGTGCTACGCATAACTCGGAGATTCACTTCGGATGATCAAGTCGCAAACGCTTC 522 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 568 GCGATGTGTGCTACGCATAACTCGGAGATTCACTTCGGATGATCAAGTCTCAAACGCTTC 627 Query 523 AAACGCAAACGCAAATTCAAGACGTTTAGCGGCTACCACAGGG-CTCAAGAAACAGGCGT 581 ||||||||||||||||| |||||||||||||| |||| ||| |||||||||||||||| Sbjct 628 AAACGCAAACGCAAATTTGGGACGTTTAGCGGCTGCCAC-GGGTCTCAAGAAACAGGCGT 686 Query 582 TGAAACAAATCCCCGTGGGATTGTACGGATCAGGAATCATTGACATGAAAGCTACGGAGT 641 |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 687 TGAAACAAATCCCCGTGGGACTGTACGGATCAGGAATCATAGACATGAAAGCTACGGAGT 746 Query 642 GTTTGATCTGTCTCGGAGATTTCGAAGACGGGGAAAAAGTTAGGGTTTTGCCTAAATGTA 701 ||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||||| Sbjct 747 GTTTGATCTGTCTGGGAGATTTCGAAGATGGAGAAAAAGTTAGGGTTTTACCTAAATGTA 806 Query 702 ACCATGGCTTCCACGTGAGGTGCATCGATACTTGGTTGCTCTCACGTTCCTCTTGCCCCA 761 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 807 ACCATGGCTTCCACGTGAGGTGCATCGATACTTGGTTGCTCTCACGTTCCTCTTGCCCCA 866 Query 762 CTTGTAGACAATCGATACTCCTTGATGAGCAGCCGTCGCCGATGGCTGTTTCCCGGCGGG 821 |||||||||||||| |||||||||| | ||||| ||||||||||||||||||||||||| Sbjct 867 CTTGTAGACAATCGCTACTCCTTGA-G--CAGCCTTCGCCGATGGCTGTTTCCCGGCGGG 923 Query 822 ACGAGGACATGGTAGTTTCCATCGTATAGGGACATGAT-GGTGATTTCTTAACTATGCTC 880 |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 924 ACGAGGACATGGTAGTTTCCATCGTATAGGGACATGATCGGTGATTTCTTAATTATGCTC 983 Query 881 TCTCAAGTGGGCTTGGTTTTTGTTGGTTGGTTTCATAATTGtttttttGTGTGTGCAAAC 940 |||||||||||||||||||||||||||||| | | |||||| | |||||||||||| Sbjct 984 TCTCAAGTGGGCTTGGTTTTTGTTGGTTGG----A-A-TTGTTTGT--GTGTGTGCAAAC 1035 Query 941 TAATGTGATT-ATTTACACATATTCTTGTTCTGGTGAATTTA----GTGTGATGGGTTTT 995 |||||||||| |||| ||||||||||||||||| |||||||| |||||||||||||| Sbjct 1036 TAATGTGATTTATTTTCACATATTCTTGTTCTGATGAATTTAATTAGTGTGATGGGTTTT 1095 Query 996 CTTGAAATCAAGC 1008 ||||||||||||| Sbjct 1096 CTTGAAATCAAGC 1108 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49380166501 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5