BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478433
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10920.1 | Symbols: MSD1, MEE33, ATMSD1 | manganese superoxi... 1314 0.0
> AT3G10920.1 | Symbols: MSD1, MEE33, ATMSD1 | manganese superoxide
dismutase 1 | chr3:3417954-3419853 FORWARD LENGTH=1029
Length=1029
Score = 1314 bits (711), Expect = 0.0
Identities = 825/879 (94%), Gaps = 12/879 (1%)
Strand=Plus/Plus
Query 20 GAAGGAGAAA-GAATCTTCCAAAGCAACAATGGCGATTCGTTGTGTAGCGAGTAGAAAAA 78
|||||||||| |||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 34 GAAGGAGAAACAAATCTT-CATTCCAACAATGGCGATTCGTTGTGTAGCGAGTAGAAAAA 92
Query 79 CCCTAGCCGGCTTGAAGGAGACATCATCGAGGCTCTT-AGGATTCAGAGGGGTTCAGACT 137
|||||||||||||||||||||||||||||||||| || |||| |||||||| ||||||||
Sbjct 93 CCCTAGCCGGCTTGAAGGAGACATCATCGAGGCTATTGAGGA-TCAGAGGGATTCAGACT 151
Query 138 TTTACGCTTCCTGATCTTCCTTACGATTATGGCGCATTGGAACCGGCGATTAGTGGAGAG 197
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 152 TTTACGCTTCCTGATCTTCCTTACGATTATGGCGCATTGGAACCGGCCATTAGTGGAGAG 211
Query 198 ATCATGCAGATTCATCACCAGAAGCATCACCAGGCTTATGTTACTAATTACAATAATGCT 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 ATCATGCAGATTCATCACCAGAAGCATCACCAGGCTTATGTTACTAATTACAATAATGCT 271
Query 258 CTTGAGCAGCTGGATCAGGCTGTGAATAAAGGAGATGCTTCCACTGTTGTTAAGTTGCAG 317
||||||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 272 CTTGAGCAGCTTGATCAAGCTGTGAACAAGGGAGATGCTTCCACTGTTGTTAAGTTGCAG 331
Query 318 AGCGCTATCAAATTCAACGGCGGAGGTCATGTCAACCATTCGATTTTCTGGAAGAACCTT 377
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 AGCGCCATCAAATTCAACGGCGGAGGTCATGTCAACCATTCGATTTTCTGGAAGAACCTT 391
Query 378 GCTCCTGT-CAATGAAGGTGGTGGAGAGCCACCAAAAGGATCTCTTGGCAGCGCCATTGA 436
|||||| | || |||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 392 GCTCCT-TCCAGTGAAGGTGGTGGAGAGCCACCAAAAGGATCTCTTGGTAGTGCCATTGA 450
Query 437 TACTCACTTTGGCTCTCTTGAAGGTCTGGTGAAAAAGATGAGTGCTGAAGGTGCTGCTCT 496
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 451 CGCTCACTTTGGCTCCCTTGAAGGTCTGGTGAAAAAGATGAGTGCTGAGGGTGCTGCAGT 510
Query 497 GCAAGGCTCCGGATGGGTGTGGCTCGGACTAGACAAAGAACTGAAGAAGCTTGTGGTTGA 556
||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 511 GCAAGGCTCAGGATGGGTGTGGCTCGGACTAGACAAAGAACTGAAGAAGCTAGTTGTTGA 570
Query 557 CACAACTGCCAATCAGGATCCATTGGTGACAAAAGGAGGAAGCTTGGTACCTCTGGTGGG 616
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 571 CACAACTGCCAATCAGGATCCATTAGTGACAAAAGGAGGAAGCTTGGTACCTCTGGTGGG 630
Query 617 TATAGATGTTTGGGAGCACGCCTACTACTTGCAGTACAAAAATGTGAGGCCGGAGTATCT 676
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 631 TATAGATGTTTGGGAGCACGCCTACTACTTGCAGTACAAAAATGTGAGGCCTGAGTATCT 690
Query 677 GAAGAATGTATGGAAAGTGATCAACTGGAAATATGCAAGCGAGGTTTATGAGAAGGAATG 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 GAAGAATGTATGGAAAGTGATCAACTGGAAATATGCAAGCGAGGTTTATGAGAAGGAAAA 750
Query 737 CAACTGAATCGTT-ACACGATGACATAAGGAGAGGAACCAGTTCCAGCTCGGCTTT-GTT 794
||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||| |||
Sbjct 751 CAACTGAATCGTTTACACGATGACATAAGGAGATGAACCAGTTCCAGCTCAGCTTTTGTT 810
Query 795 TTTAAAGTTGTCTGAAGCAAACATACAATGTCTCTTCTTTGGTTTTTGAGTTTTACTCAA 854
|| || |||||||||| ||||| |||| |||||||| | ||||||| || ||| |||||
Sbjct 811 TT-AAGGTTGTCTGAAACAAACTTACAGTGTCTCTT-T--GGTTTTTAAGATTTGCTCAA 866
Query 855 CTGAGTTGTGTGGTACGTTGTTTTTCAATAAAAGATTTC 893
|| || |||||||||||||||||| |||| |||| ||||
Sbjct 867 CTCAGCTGTGTGGTACGTTGTTTTACAATGAAAGTTTTC 905
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46968927445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5