BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478435
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10940.1 | Symbols: | dual specificity protein phosphatase ... 1441 0.0
> AT3G10940.1 | Symbols: | dual specificity protein phosphatase
(DsPTP1) family protein | chr3:3422078-3423445 REVERSE LENGTH=1081
Length=1081
Score = 1441 bits (780), Expect = 0.0
Identities = 882/931 (95%), Gaps = 7/931 (1%)
Strand=Plus/Plus
Query 1 GAGGACGATGAGTGTGATTGGAACCAAAAGCTGTATTTTCTCGGTGACTATATATTCCCG 60
||| ||||||||||||||||||| ||| |||||||||||||| ||| ||| ||| ||||
Sbjct 45 GAGAACGATGAGTGTGATTGGAAGCAAGAGCTGTATTTTCTCTGTGGCTAGATACACCCG 104
Query 61 AGAAAATGAG-ATTGCTTCTTGCTTCACTTCTATCAACAAGAAATCGTCAATTGATCTGA 119
|||||||||| | | ||||||||||||||||||||||||||||||| || |||||||||
Sbjct 105 AGAAAATGAGAAAT-CTTCTTGCTTCACTTCTATCAACAAGAAATCTTCGCTTGATCTGA 163
Query 120 GATTTCCCAGAAATCTGGCGGGAGTTTCCTGCAAAATCTCTGGAGAAAATCCAGGAACAA 179
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 164 GATTTCCCAGAAATCTGGCGGGAGTTTCCTGCAAATTCTCTGGAGAAAATCCAGGAACAA 223
Query 180 ATAAGGTTTCTCTGAGCTCCAAGAACAAAATGGAGGATTACAATACAGCTATGAAGAGAT 239
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 ATGGGGTTTCTCTTAGCTCCAAGAACAAAATGGAGGATTACAATACAGCTATGAAGAGAT 283
Query 240 TGATGAGGAGCCCTTATGAATATCATCATGATCTGGGTATGAACTATACATTGATAAGAG 299
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 284 TGATGAGAAGCCCTTATGAATATCATCATGATCTAGGTATGAACTATACATTGATAAGAG 343
Query 300 ATGAACTTATCGTTGGGTCGCAGCCACAGAAACCTGAGGACATAGATCACTTGAAGCAGG 359
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 344 ATGAACTTATAGTTGGGTCACAGCCACAGAAACCTGAGGACATAGATCACTTGAAGCAGG 403
Query 360 AACAGAATGTTGCTTACATACTTAACTTGCAGCAGGACAAGGACATTGACTATTGGGGAA 419
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 404 AACAGAATGTTGCTTACATACTTAACTTGCAGCAGGATAAGGACATTGAGTATTGGGGAA 463
Query 420 TCGATTTGGATTCCATTGTTCGAAGATCTAAGGAGCTTGGAATCCGTCACATGAGAAGGC 479
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 464 TCGATTTGGATTCCATTGTTAGAAGATGTAAGGAGCTTGGAATCCGTCACATGAGAAGGC 523
Query 480 CCGCTAAAGATTTCGATCCACTTTCGTTGAGAAGCCAACTTCCAAAAGCTGTTTCTTCTT 539
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 CTGCTAAAGATTTTGATCCACTTTCGTTGAGAAGCCAACTTCCAAAAGCTGTTTCTTCTT 583
Query 540 TGGAATGGGCGGTTTCAGAAGGTAAAGGAAGAGTCTACGTGCATTGTTCAGCCGGACTGG 599
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||
Sbjct 584 TGGAATGGGCGGTTTCAGAAGGTAAAGGAAGAGTCTATGTGCATTGCTCAGCCGGATTGG 643
Query 600 GAAGAGCTCCAGGGGTTTCGATTGCTTATATGTATTGGTTCTGCGACATGAACCTTAACA 659
||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||
Sbjct 644 GAAGAGCTCCAGGGGTTTCCATTGCTTATATGTATTGGTTCTGTGACATGAATCTTAACA 703
Query 660 CGGCTTATGACAATTTGGTATCAAAGCGTCCATGTGGGCCTAACAAAGGAGCCATCCGCG 719
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 704 CGGCTTATGACACTTTGGTATCAAAGCGTCCATGTGGGCCTAACAAAGGAGCCATCCGTG 763
Query 720 GCGCAACATATGATCTGGCTAAGAACGATCCCTGGAAAGAGCCCTTTGAGAGTCTCCCTG 779
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 764 GTGCAACATATGATCTGGCTAAGAATGATCCCTGGAAAGAGCCCTTTGAGAGTCTCCCTG 823
Query 780 AGAACGCATTCGAGGACATTGCCGATTGGGAAAGGAAGTTGATTCAAGAACGTGTTCGGG 839
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 824 AGAACGCATTCGAGGACATTGCAGATTGGGAAAGGAAGTTGATTCAAGAACGTGTTCGGG 883
Query 840 CCCTCCGTGGAACCTGAAAATCAGTA-TAGCAT-ATA-TATGTATAATTTCGAATAAAAT 896
|||||||||||||||||||||||||| | | | | | ||||||||||||||||||||||
Sbjct 884 CCCTCCGTGGAACCTGAAAATCAGTAATT-C-TGAGAATATGTATAATTTCGAATAAAAT 941
Query 897 CTAGACTTCTGTATATTCTAAAGCTACTGAT 927
|||||||||||||||| ||||||||| |||
Sbjct 942 GTAGACTTCTGTATATTTTAAAGCTACGGAT 972
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45311200594
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5