BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478456
Length=1631
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11170.1 | Symbols: FAD7, FADD | fatty acid desaturase 7 | c... 2451 0.0
AT5G05580.1 | Symbols: FAD8 | fatty acid desaturase 8 | chr5:16... 1214 0.0
> AT3G11170.1 | Symbols: FAD7, FADD | fatty acid desaturase 7 |
chr3:3499801-3502452 FORWARD LENGTH=1825
Length=1825
Score = 2451 bits (1327), Expect = 0.0
Identities = 1511/1595 (95%), Gaps = 32/1595 (2%)
Strand=Plus/Plus
Query 53 aaaaaa-aaaGAGAGAGTCTTTTCTCTTCTGGGGAGAGAGCTGGAGCTCTAATGGCGAAC 111
|||||| ||| |||||| |||||| | ||||||||||||||| || |||||||||||||
Sbjct 109 AAAAAATAAAAAGAGAGACTTTTCAC-TCTGGGGAGAGAGCTCAAGTTCTAATGGCGAAC 167
Query 112 TTGGTCTTATCAGAATGTGGTTTAAGACCTCTCCCCAGAATCTACACAACACCCAGATCC 171
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 168 TTGGTCTTATCAGAATGTGGTATACGACCTCTCCCCAGAATCTACACAACACCCAGATCC 227
Query 172 AATTTCGTCTCTAACAACAACAAATTCAGACCATCA----C--CTTCTTCTTAC-AAA-A 223
|||||| |||| |||||||||||||||||||||||| | ||||||||||| ||| |
Sbjct 228 AATTTCCTCTCCAACAACAACAAATTCAGACCATCACTTTCTTCTTCTTCTTACAAAACA 287
Query 224 -CATCATCTCCTCTCG-CTTTTCGTCTGAATTCACGAGATGGGTTCACGAGGAATTGGGC 281
||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 288 TCATCATCTCCTCT-GTCTTTTGGTCTGAATTCACGAGATGGGTTCACGAGGAATTGGGC 346
Query 282 GTTGAATGTGAGCACACCGTTAACGACACCGATATTTGAGGAGTCTCCATTAGAGGAAGA 341
|||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 347 GTTGAATGTGAGCACACCATTAACGACACCAATATTTGAGGAGTCTCCATTGGAGGAAG- 405
Query 342 ATTCAAAGATAATAAGCAAAGATTCGATCCAGGTGCGCCTCCTCCGTTCAATTTAGCGGA 401
| | | || | || || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 406 A-T---A-AT-A-AA-CAGAGATTCGATCCAGGTGCGCCTCCTCCGTTCAATTTAGCTGA 457
Query 402 TATTAGAGCAGCTATACCTAAGCATTGTTGGGTTAAGAATCCATGGAAGTCGTTGAGTTA 461
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 458 TATTAGAGCAGCTATACCTAAGCATTGTTGGGTTAAGAATCCATGGAAGTCTTTGAGTTA 517
Query 462 TGTCGTCAGAGATGTCGCTATCGTCTTTGCTTTGGCTGCTGGAGCTGCTTACCTCAACAA 521
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 518 TGTCGTCAGAGACGTCGCTATCGTCTTTGCATTGGCTGCTGGAGCTGCTTACCTCAACAA 577
Query 522 TTGGATTGTTTGGCCTCTCTATTGGCTCGCTCAAGGAACCATGTTTTGGGCTCTCTTTGT 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 TTGGATTGTTTGGCCTCTCTATTGGCTCGCTCAAGGAACCATGTTTTGGGCTCTCTTTGT 637
Query 582 TCTTGGTCATGACTGTGGACATGGTAGTTTCTCAAATGATCCGAGGTTGAACAGTGTGGT 641
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 638 TCTTGGTCATGACTGTGGACATGGTAGTTTCTCAAATGATCCGAAGTTGAACAGTGTGGT 697
Query 642 TGGTCATCTTCTTCATTCCTCAATTCTGGTCCCATACCATGGCTGGAGAATTAGCCACAG 701
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 698 CGGTCATCTTCTTCATTCCTCAATTCTGGTCCCATACCATGGCTGGAGAATTAGTCACAG 757
Query 702 AACTCACCACCAGAACCATGGACATGTCGAGAACGATGAATCTTGGCATCCTATGTCTGA 761
||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 758 AACTCACCACCAGAACCATGGACATGTTGAGAATGACGAATCTTGGCATCCTATGTCTGA 817
Query 762 GAAAATCTACAAGACTTTGGACAAACCGACTAGATTCTTTAGATTTACACTGCCTCTCGT 821
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 818 GAAAATCTACAATACTTTGGACAAGCCGACTAGATTCTTTAGATTTACACTGCCTCTCGT 877
Query 822 GATGCTCGCATACCCTTTCTACTTGTGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTA 881
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 GATGCTTGCATACCCTTTCTACTTGTGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTA 937
Query 882 CCATCCGGACAGCGACTTGTTCCTCCCTAAAGAGAAAAAAGATGTCCTTACTTCTACTGC 941
|||||| ||||| |||||||||||||||||||||| ||| |||||||| |||||||||||
Sbjct 938 CCATCCAGACAGTGACTTGTTCCTCCCTAAAGAGAGAAAGGATGTCCTCACTTCTACTGC 997
Query 942 TTGTTGGACTGCAATGGCTGCTCTGCTTGTCTGTCTCAACTTCGCAATCGGTCCAATTCA 1001
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 998 TTGTTGGACTGCAATGGCTGCTCTGCTTGTTTGTCTCAACTTCACAATCGGTCCAATTCA 1057
Query 1002 AATGCTCAAACTTTATGGAATTCCTTATTGGATAAATGTAATGTGGTTGGACTTTGTGAC 1061
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1058 AATGCTCAAACTTTATGGAATTCCTTACTGGATAAATGTAATGTGGTTGGACTTTGTGAC 1117
Query 1062 TTACCTGCATCACCATGGCCATGAAGATAAGCTTCCTTGGTACCGTGGAAAGGAATGGAG 1121
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1118 TTACCTGCATCACCATGGTCATGAAGATAAGCTTCCTTGGTACCGTGGCAAGGAGTGGAG 1177
Query 1122 TTACCTGAGAGGAGGACTTACAACATTGGACCGTGACTACGGATTGATCAATAACATCCA 1181
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1178 TTACCTGAGAGGAGGACTTACAACATTGGATCGTGACTACGGATTGATCAATAACATCCA 1237
Query 1182 TCACGACATTGGAACTCATGTGATACATCATCTTTTCCCGCAGATCCCACATTATCATCT 1241
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 TCATGATATTGGAACTCATGTGATACATCATCTTTTCCCGCAGATCCCACATTATCATCT 1297
Query 1242 AGTAGAAGCAACAGAAGCAGCTAAACCAGTATTAGGGAAGTATTACAGGGAGCCTGATAA 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 AGTAGAAGCAACAGAAGCAGCTAAACCAGTATTAGGGAAGTATTACAGGGAGCCTGATAA 1357
Query 1302 GTCTGGACCATTGCCATTACATTTACTGGAAATTCTAGCAAAAAGTATTAAAGAAGATCA 1361
||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1358 GTCTGGACCGTTGCCATTACATTTACTGGAAATTCTAGCGAAAAGTATAAAAGAAGATCA 1417
Query 1362 TTACGTGAGCGACGAAGGAGATGTTGTATACTATAAAGCAGATCCAAATCTCTATGGAGA 1421
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1418 TTACGTGAGCGACGAAGGAGAAGTTGTATACTATAAAGCAGATCCAAATCTCTATGGAGA 1477
Query 1422 AGTCAAAGTAAGAGCAGATTGAAATGAAGCAGGCTTGCGATTGAAGTTTTT-CTATTTCA 1480
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1478 GGTCAAAGTAAGAGCAGATTGAAATGAAGCAGGCTTGAGATTGAAGTTTTTTCTATTTCA 1537
Query 1481 GACCAGCTGATTTTTTGTTTACTGTATCAATTTATTGTGTCACCCACCAGAGAGTTAGTA 1540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1538 GACCAGCTGATTTTTTGCTTACTGTATCAATTTATTGTGTCACCCACCAGAGAGTTAGTA 1597
Query 1541 TCTCTGAATACGATC-A---GATGGAAACAACAAATTTGTTTTCGATACTGAAGCTATAT 1596
||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||
Sbjct 1598 TCTCTGAATACGATCGATCAGATGGAAACAACAAATTTGTTTGCGATACTGAAGCTATAT 1657
Query 1597 ACCAACCAATATACATTGCATTATCTTAGATTCAT 1631
| | ||| || |||||||||||||||||| |||
Sbjct 1658 AT-A-CCA-TA--CATTGCATTATCTTAGATACAT 1687
Score = 113 bits (61), Expect = 5e-24
Identities = 85/95 (89%), Gaps = 8/95 (8%)
Strand=Plus/Plus
Query 1331 AAATTCTAGCAAAAAGTATTAAAGAAGATCATTACGTGAGCGACGAAGGAGATGTTGTAT 1390
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1690 AAATTCTAGCAAAAAGTATAAAAGAAGATCATTACGTGAGCGACGAAGGAGATGTTGTAT 1749
Query 1391 AC-TA-TA-AA-----GCAGATCCAAATCTCTATG 1417
| || || || |||||||||||||||||||
Sbjct 1750 ATATACTACAAATTAAGCAGATCCAAATCTCTATG 1784
> AT5G05580.1 | Symbols: FAD8 | fatty acid desaturase 8 | chr5:1664134-1666527
FORWARD LENGTH=1687
Length=1687
Score = 1214 bits (657), Expect = 0.0
Identities = 939/1073 (88%), Gaps = 28/1073 (3%)
Strand=Plus/Plus
Query 361 AGATTCGATCCAGGTGCGCCTCCTCCGTTCAATTTAGCGGATATTAGAGCAGCTATACCT 420
|||||||| ||||||||||||||||| |||||||| |||||||| |||||||| ||||||
Sbjct 435 AGATTCGACCCAGGTGCGCCTCCTCCCTTCAATTTGGCGGATATAAGAGCAGCCATACCT 494
Query 421 AAGCATTGTTGGGTTAAGAATCCATGGAAGTCGT-TGAGTTATGTCGTCAGAGATGTCGC 479
|||||||||||||||||||||||||||| ||| | |||||||||| ||||||||||| ||
Sbjct 495 AAGCATTGTTGGGTTAAGAATCCATGGATGTC-TATGAGTTATGTTGTCAGAGATGTTGC 553
Query 480 TATCGTCTTTGCTTTGGCTGCTGGAGCTGCTTACCTCAACAATTGGATTGTTTGGCCTCT 539
||||||||||| |||||||||| ||||||||| ||||||||||| || | ||||||||
Sbjct 554 TATCGTCTTTGGATTGGCTGCTGTTGCTGCTTACTTCAACAATTGGCTTCTCTGGCCTCT 613
Query 540 CTATTGGCTCGCTCAAGGAACCATGTTTTGGGCTCTCTTTGTTCTTGGTCATGACTGTGG 599
||| ||| ||||||||||||||||||| |||||||||||||| ||||| |||||||| ||
Sbjct 614 CTACTGGTTCGCTCAAGGAACCATGTTCTGGGCTCTCTTTGTCCTTGGCCATGACTGCGG 673
Query 600 ACATGGTAGTTTCTCAAATGATCCGAGGTTGAACAGTGTGGTTGGTCATCTTCTTCATTC 659
||||||||| ||||| |||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 674 ACATGGTAGCTTCTCGAATGATCCGAGGCTGAACAGTGTGGCTGGTCATCTTCTTCATTC 733
Query 660 CTCAATTCTGGTCCCATACCATGGCTGGAGAATTAGCCACAGAACTCACCACCAGAACCA 719
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 734 CTCAATTCTGGTCCCTTACCATGGCTGGAGGATTAGCCACAGAACTCACCACCAGAACCA 793
Query 720 TGGACATGTCGAGAACGATGAATCTTGGCATCCTATGTCTGAGAA-AATCTACAAGACTT 778
||| ||||||||||| || ||||| ||||||||| || |||| || |||||||||| ||
Sbjct 794 TGGTCATGTCGAGAATGACGAATCATGGCATCCTTTGCCTGA-AAGCATCTACAAGAATT 852
Query 779 TGGACAAA-CCGACT-AGATTCTTTAGATTTACACTGCC-TCTCGTGATGCTCGCATACC 835
|||| ||| ||||| | | | ||||| ||||||||||| | || |||||||||||||
Sbjct 853 TGGA-AAAGACGACTCA-AATGTTTAGGTTTACACTGCCTTTTC-CAATGCTCGCATACC 909
Query 836 CTTTCTACTTGTGGGCTC-GAAGTCCGGGGAAA-AAGGGTTCTCATTACCATCCGGACAG 893
|||||||||||| || | ||||||| |||||| || ||||||||||| |||||||||||
Sbjct 910 CTTTCTACTTGT-GGAACAGAAGTCCAGGGAAACAA-GGTTCTCATTATCATCCGGACAG 967
Query 894 CGACTTGTTCCTCCCTAAAGAGAAAAAAGATGTCCTTACTTCTACTGCTTGTTGGACTGC 953
|||||||| || || |||||||| |||||||| || || || ||||| |||||||||||
Sbjct 968 TGACTTGTTTCTTCCAAAAGAGAAGAAAGATGTTCTGACATCAACTGCCTGTTGGACTGC 1027
Query 954 AATGGCTGCTCTGCTTGTCTGTCTCAACTTCG-CAATCGGTCCAATTCAAATGCTCAAAC 1012
|||||||||| ||||||| ||||||||||| | | || |||||||| || ||||||||||
Sbjct 1028 AATGGCTGCTTTGCTTGTTTGTCTCAACTTTGTC-ATGGGTCCAATCCAGATGCTCAAAC 1086
Query 1013 TTTATGGAATTCCTTATTGGATAAATGTAATGTGGTTGGACTTTGTGACTTACCTGCATC 1072
| ||||| || |||||||||||| |||||||||||||||||| || |||||| |||| |
Sbjct 1087 TATATGGCATCCCTTATTGGATATTTGTAATGTGGTTGGACTTCGTCACTTACTTGCACC 1146
Query 1073 ACCATGGCCATGAAGATAAGCTTCCTTGGTACCGTGGAAAGGAATGGAGTTACCTGAGAG 1132
||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1147 ACCATGGACATGAAGACAAGCTCCCTTGGTATCGTGGAAAGGAATGGAGTTACCTGAGAG 1206
Query 1133 GAGGACTTACAACATTGGACCGTGACTACGGATTGATCAATAACATCCATCACGACATTG 1192
|||| || |||||||| || ||||||||||||| ||||||||||||||| ||||| ||||
Sbjct 1207 GAGGGCTCACAACATTAGATCGTGACTACGGATGGATCAATAACATCCACCACGATATTG 1266
Query 1193 GAACTCATGTGATACATCATCTTTTCCCGCAGATCCCACATTATCATCTAGTAGAAGCAA 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 GAACTCATGTGATACATCATCTTTTCCCGCAGATCCCACATTATCATCTAGTAGAAGCAA 1326
Query 1253 CAGAAGCAGCTAAACCAGTATTAGGGAAGTATTACAGGGAGCCTGATAAG-TCTGGACCA 1311
|||||||||||||||||||| |||| ||||| ||||| || || || || ||||||||
Sbjct 1327 CAGAAGCAGCTAAACCAGTACTAGGAAAGTACTACAGAGAACC-GAAAAACTCTGGACC- 1384
Query 1312 T-TGCCA-TTACATTTACTGGAAATTCTAGCA-AAA-AGTATTAAAGAAGATCATTACGT 1367
| ||||| || || ||||||| || || || ||| ||||| ||| |||| |||| |||
Sbjct 1385 TCTGCCACTT-CACTTACTGGGAAGCCT--CATAAAGAGTATGAAACAAGACCATTTCGT 1441
Query 1368 GAGCGACGA-AGGAGATGTTGTATACTATAAAGCAGATCCAAATCTCTATGGA 1419
||||| | ||||||||| || |||||| | ||||||||||| ||| |||||
Sbjct 1442 AAGCGAT-ACAGGAGATGTCGTGTACTATGAGGCAGATCCAAAACTCAATGGA 1493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80571874725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5