BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478478
Length=1539
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11410.1 | Symbols: ATPP2CA, AHG3, PP2CA | protein phosphata... 1940 0.0
> AT3G11410.1 | Symbols: ATPP2CA, AHG3, PP2CA | protein phosphatase
2CA | chr3:3583883-3585790 REVERSE LENGTH=1639
Length=1639
Score = 1940 bits (1050), Expect = 0.0
Identities = 1382/1531 (90%), Gaps = 67/1531 (4%)
Strand=Plus/Plus
Query 1 ATTGCATTTCCTAACGCTC-A-AAAAtctctttct-ct-ctctctactaatatctctctc 56
||||||||||||||||||| | ||||||||| ||| || | ||| || | ||||||||
Sbjct 1 ATTGCATTTCCTAACGCTCAACAAAATCTCTCTCTACTAATATCT-CT-CTCTCTCTCTC 58
Query 57 t-TGTTGAAGAAGACGAAGACTCA-AATCGGAGATTGTTTG--TTTGCTTTGCTCTGT-A 111
| | ||| | | | ||||||||| |||||||||||||||| |||| |||||||||| |
Sbjct 59 TCTATTGTTG-A-A-GAAGACTCATAATCGGAGATTGTTTGTTTTTGGTTTGCTCTGTAA 115
Query 112 ATTGAAGAAAGGTTCTGTT-GTGGTTAAATGGCTGGGATTTGTTGCGGTGTTGTTGGAGA 170
|||| || || ||| |||| | | | ||||||||||||||||||||||||||||||||||
Sbjct 116 ATTGGAG-AA-GTTTTGTTAGAGATCAAATGGCTGGGATTTGTTGCGGTGTTGTTGGAGA 173
Query 171 GTCTGAACCGGCGGCACCGGTTGATTCAACTTCTCGAGCTTCTCTTAGACGGAGGTTAGA 230
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 GACTGAACCGGCGGCACCGGTTGATTCAACTTCTCGAGCTTCTCTTAGACGGAGGTTAGA 233
Query 231 TCTACTTCCGTCGATCAAGATTGTTGCTGACTCCGCCGTTGCTCCTCCGCTTGAGAGTTG 290
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||
Sbjct 234 TCTACTTCCGTCGATCAAAATTGTTGCTGACTCCGCCGTTGCTCCTCCGCTTGAAAACTG 293
Query 291 TCGTAAAAGGCAGAAGCTTGAGACAGTAGTG---T---CG--A----GAAATCTAGATCT 338
|||||| ||||||||| ||||||||||||| | || | |||||||||||||
Sbjct 294 CCGTAAACGGCAGAAGCGTGAGACAGTAGTGCTCTCGACGTTACCGGGAAATCTAGATCT 353
Query 339 GGAATCGAATGTGAGGAGTGA-ACATAAGAAGGTTAAATCAGCGGTTACGAATTCAAATT 397
||| ||||||||||||||||| | ||||||||| || |||||||||||||||||||||||
Sbjct 354 GGATTCGAATGTGAGGAGTGAGA-ATAAGAAGGCTAGATCAGCGGTTACGAATTCAAATT 412
Query 398 CCGTTACGGAAGCAGAGAGCTGTTTCTTTTCCGATGTGCCTAGGATCGGTACGACGTCGG 457
| |||||||||||||||| |||||||||||||||| |||| |||||||||||||||||
Sbjct 413 CTGTTACGGAAGCAGAGA---GTTTCTTTTCCGATGTACCTAAGATCGGTACGACGTCGG 469
Query 458 TTTGTGGTAGAAGAAGAGACATGGAAGACGCTGTATCAATTCATCCTTCGTTTCTTCAAC 517
|||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 470 TTTGTGGTAGAAGACGAGACATGGAAGACGCTGTCTCGATTCATCCTTCGTTTCTTCAAC 529
Query 518 GAAACTCTGAGAATCTTCATTTCTACGGTGTCTTTGACGGCCATGGCTGCTCTCATGTTG 577
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 GGAACTCTGAGAATCATCATTTCTACGGTGTCTTTGACGGCCATGGCTGCTCTCATGTTG 589
Query 578 CGGAGAAGTGTAGAGAACGGTTGCATGATATAGTGAAGAAGGAAGTTGAAGTTATGGCTT 637
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 CGGAGAAGTGCAGAGAACGGTTGCATGATATAGTGAAGAAGGAAGTTGAAGTTATGGCTT 649
Query 638 CCGACGAGTGGAAAGAGACGATGGTGAAGAGTTTTCAAAAAATGGACAGAGAAGTTAGCC 697
|||||||||||| |||||||||||| |||||||||||||||||||| | |||||||||||
Sbjct 650 CCGACGAGTGGACAGAGACGATGGTTAAGAGTTTTCAAAAAATGGATAAAGAAGTTAGCC 709
Query 698 AGCGAGAGTGTAACTTAGTTGTTAATGGTGCAAATCGGAGTATGAAGAACTCTTGTAGAT 757
| ||||||||||||||||||||||||||||| | |||||||||||| || ||||||||||
Sbjct 710 AACGAGAGTGTAACTTAGTTGTTAATGGTGCTACTCGGAGTATGAAAAATTCTTGTAGAT 769
Query 758 GTGAATTGCAGTCTCCTCAGTGCGATGCCGTCGGATCCACCGCTGTTGTCTCTGTTGTCA 817
|||||||||||||||||||||| || ||||||||||||||||||||||| || |||||||
Sbjct 770 GTGAATTGCAGTCTCCTCAGTGTGACGCCGTCGGATCCACCGCTGTTGTATCGGTTGTCA 829
Query 818 CGCCGGAGAAGATCATTGTTTCCAACTGCGGCGATTCTCGCGCCGTGCTTTGCCGTAACG 877
|||||||||||||||||||||| || ||||| ||||| || || |||||||| |||||||
Sbjct 830 CGCCGGAGAAGATCATTGTTTCTAATTGCGGTGATTCACGGGCTGTGCTTTGTCGTAACG 889
Query 878 GTGTAGCCATTCCTCTATCCGTAGATCACAAGCCGGATCGACCCGATGAATTGATTCGGA 937
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 GTGTAGCCATTCCTCTCTCCGTAGATCACAAGCCGGATCGACCCGATGAATTGATTCGGA 949
Query 938 TCCAGCAAGCGGGTGGGCGGGTTATTTATTGGGATGGAGCTAGGGTTCTTGGAGTTCTTG 997
|||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 950 TCCAACAAGCTGGTGGGCGAGTTATATATTGGGATGGAGCTAGGGTTCTTGGAGTTCTTG 1009
Query 998 CCATGTCTAGAGCAATTGGCGATAATTACTTGAAACCATATGTGATTCCGGATCCGGAGG 1057
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1010 CCATGTCTAGAGCAATTGGTGATAATTACTTGAAACCGTATGTGATTCCGGATCCGGAGG 1069
Query 1058 TTACAGTGACGGATCGTACCGACGACGACGAGTGTTTGATCTTGGCGAGTGATGGACTAT 1117
| |||||||||||||| || || || || |||||||||||||||||||||||||||||||
Sbjct 1070 TAACAGTGACGGATCGAACTGATGAGGATGAGTGTTTGATCTTGGCGAGTGATGGACTAT 1129
Query 1118 GGGACGTTGTACCAAATGAGACGGCGTGTGGCGTGGCTCGCATGTGCCTTCGAGGTGCTG 1177
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 GGGATGTTGTACCAAACGAGACGGCGTGTGGCGTGGCTCGCATGTGCCTTCGAGGTGCTG 1189
Query 1178 GTCCGA-TGGATGA-TGCAGCA-GCGGCGCACAATGCGTGCTCTGATGCGGCGTTGCTAT 1234
|| || || | || | ||| | |||||||||||||||||||| |||||||||||||| |
Sbjct 1190 GTGCGGGTG-ACGACT-CAG-ATGCGGCGCACAATGCGTGCTCCGATGCGGCGTTGCTCT 1246
Query 1235 TAACGAAGTTGGCTCTAGCAAGACAGAGCTCCGATAACGTGAGCGTCGTGGTGGTTGACC 1294
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1247 TAACAAAGTTGGCTCTAGCAAGACAGAGCTCCGATAACGTGAGCGTCGTTGTGGTTGACT 1306
Query 1295 TGAGGAAGAGGAGGAATAATCAATCGTCGTCTTAATAATATAGTTAGTGTTTTAATTAGT 1354
||||||||||||||||||||||| ||||||||||||||| |||| || | | |||||||
Sbjct 1307 TGAGGAAGAGGAGGAATAATCAAGCGTCGTCTTAATAAT-TAGT--GT-TAT-AATTAGT 1361
Query 1355 AATAGTATTAGAGA-AATTGTTACATAAGCCTAATTGTAAtt-t-tt-t----------c 1400
| |||||||||| | |||||||||||| |||||||||||||| | || | |
Sbjct 1362 AGTAGTATTAGA-ATAATTGTTACATA-GCCTAATTGTAATTGTATTCTTTTTATTTTTC 1419
Query 1401 tattttagtttt-ctcattg-aaggtgttctttctttt-t-tt--AGTTAGCTCTTAATT 1454
|||||||||||| |||||| |||||||| |||||||| | || |||||||||||||||
Sbjct 1420 TATTTTAGTTTTTCTCATTTTAAGGTGTTTTTTCTTTTCTATTTTAGTTAGCTCTTAATT 1479
Query 1455 CAGGCTGGGGAAGAAAAAGAGCTGATTAAAT 1485
|||||||||||||||||||||||||||||||
Sbjct 1480 CAGGCTGGGGAAGAAAAAGAGCTGATTAAAT 1510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75953424585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5