BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478479
Length=2049
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11420.1 | Symbols: | Protein of unknown function (DUF604) ... 3035 0.0
> AT3G11420.1 | Symbols: | Protein of unknown function (DUF604)
| chr3:3591475-3594570 FORWARD LENGTH=2124
Length=2124
Score = 3035 bits (1643), Expect = 0.0
Identities = 1921/2054 (94%), Gaps = 23/2054 (1%)
Strand=Plus/Plus
Query 1 TATTCGAAAGTCGTCACATCGTTGACTGAAGATGAGGACATGTCCGTCATTTGTGTGTTT 60
||||||||||||||||||||||||||| ||| |||||||| || |||| || | | | |
Sbjct 27 TATTCGAAAGTCGTCACATCGTTGACTAAAGCTGAGGACAACTCTGTCA-TT-T-T-TAT 82
Query 61 TTCTATTCACGTGGCTACCTCTTCTTCTTCGTCTCCCA-TTTATCTGTTATCCCACCGAG 119
| |||||||||||||||||||||||||||||||| || ||||| ||| ||||||| |||
Sbjct 83 CT-TATTCACGTGGCTACCTCTTCTTCTTCGTCTCTCATTTTATGTGTAATCCCACAGAG 141
Query 120 CTTGTCACTCCaaaaaaggtaaaaacaaaaaaaaaacagcttctaaaaataaaaaataaa 179
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 142 CTTGTCACTCCAAAAAAGG-CAAAACAAAAAAAAAACAGCTTCTAAAAATAAAAAACAAA 200
Query 180 aaaaTAACCCCAGCCACCGTGA-GGGTAATTCCGTAAATTT-TAACAGAAACTCCATTCC 237
| ||||| ||||||||||| | |||||||||||||||||| ||||||||||||||||||
Sbjct 201 ACAATAA-TCCAGCCACCGT-AGGGGTAATTCCGTAAATTTGTAACAGAAACTCCATTCC 258
Query 238 CGCGGCGTATGCAGAGGGTAATTCCGTAAACTTAAGCCATCTCCGGTGATGAATAAGATC 297
|||||||||||||||||| ||| |||||||||||| |||||||||||||||||||| |||
Sbjct 259 CGCGGCGTATGCAGAGGGCAATCCCGTAAACTTAACCCATCTCCGGTGATGAATAATATC 318
Query 298 CACTCCTTCACGCCGGAGTGATTTTTCACATAAAAATAA-ACATGAAAGCAAACCGCGGC 356
| |||||||||||||||||||||| |||| |||||||| | ||||||||||| ||||||
Sbjct 319 AATTCCTTCACGCCGGAGTGATTTTCCACA-AAAAATAAGATATGAAAGCAAATCGCGGC 377
Query 357 GGCGGAGAGCACGGCCACCACGAGGCTCTCAAGTTTTCCAGTTTCTTCTTCATGCCGGAA 416
||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||
Sbjct 378 GGCGGAGAGCACGGCCAACACGAGGCTCTAAAGCTTTCCAGTTTCTTCTTCATGCCGGAG 437
Query 417 CGGCCACGTGATTACCTCGTGCTTTTCACACGTTTCTCCGTCCTCACGTGCCTCATCGTC 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 CGGCCACGTGATTACCTCGTGCTTTTCACACGTTTCTCCGTCCTCACGTGCCTCATCGTC 497
Query 477 TCCGTCTCTCTGGTTCTCCGTGCCACTTTTTTATCCCCCTCCGCTCGTGACTATTCCACC 536
||||| ||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 498 TCCGTATCTCTTGTTCTCCGCGCCACTTTTTTATCCCCTTCCGCTCGAGACTATTCCACC 557
Query 537 ACCTACGGTCTCCGACTCACCGCCGTACCTCAGAAAGCCATAGCTTTCCCTCCGACCGGA 596
|||||||||||| | | |||||||||||||| |||||||||||| |||||||| ||| |
Sbjct 558 ACCTACGGTCTCAAATTAACCGCCGTACCTCAAAAAGCCATAGCTCTCCCTCCGTCCGCA 617
Query 597 TCCGTCGGACCGATCAATATCTCCCACATCTTCTTCTCTATCGCCGGAGCAGCTGAGACA 656
||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 618 TCCGTCGGACCAACCAATATCTCCCATATCTTCTTCTCTATCGCCGGAGCAGCTGAGACA 677
Query 657 TGGATCGATCGGAGCCAGTACATCTCCTTATGGTGGCGAAACTCGACACGTGGCTTCGTC 716
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 678 TGGATCGATCGGAGCCAGTACATCTCCTTATGGTGGCGAAACACGACACGTGGCTTCGTC 737
Query 717 TGGCTCGATGAACCGGTGAAAATCCCCCAAAATCACTCCGATGTCAGATTCTCGATCCCG 776
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 738 TGGCTCGATGAACCGGTGAAAATCCCTGAAAATCACTCCGATGTCAGATTCTCGATCCCG 797
Query 777 ACTCGAGTTTCCGATCCAGGCTGGAGTCGATTCAAATTCTCCAGCTCAAGAGCCGCGGTT 836
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 798 ACTCGAGTTTCTGATCCAGGCTGGACTCGATTCAAATTCTCCAGCTCAAGAGCCGCGGTT 857
Query 837 CGAATCGCTCGGATAATCTGGGATAGTTATCGGCTAAATCTACCAAATGTGCGGTGGTTC 896
||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 858 CGAATCGCTCGTATAATCTGGGATAGTTATCGGTTAAATCTACCAAATGTCCGGTGGTTC 917
Query 897 GTGATGGGAGATGACGATACCGTCTTCTTCACGGATAATCTCGTCAAGGTTCTCTCGAAG 956
|| ||||||||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 918 GTCATGGGAGATGACGATACCGTCTTCTTCACCGAGAATCTCGTCAAGGTTCTCTCAAAG 977
Query 957 TACGACCACGAGCAGATGTGGTACATCGGAGGAAACTCGGAGAGCGTCGAGCAAGATGTG 1016
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 978 TACGACCACGAGCAGATGTGGTACATCGGAGGAAACTCAGAGAGCGTCGAGCAAGACGTG 1037
Query 1017 ATGCACGCGTACGACATGGCGTTTGGCGGCGGCGGTTTCGCTATTAGCCGTCCATTAGCG 1076
|||||||||||||| ||||||||||||||||| ||||||||| | |||||||||||||||
Sbjct 1038 ATGCACGCGTACGATATGGCGTTTGGCGGCGGTGGTTTCGCTCTGAGCCGTCCATTAGCG 1097
Query 1077 GCGCGTTTGGCTGGCGCGATGGATGATTGTCTCCAACGGTATTTCTATTTTTACGGTTCT 1136
||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1098 GCGCGTTTGGCCGCCGCGATGGATGATTGTCTCCAACGTTATTTCTATTTTTACGGTTCT 1157
Query 1137 GATCAGAGAATCGCGGCTTGCGTTAGCGAGATCGGCGTTCCGTTCACCGAAGAACGCGGT 1196
||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1158 GATCAGAGAATCGCGTCTTGCATCAGCGAGATCGGCGTTCCGTTCACCGAAGAACGCGGT 1217
Query 1197 TTTCACCAGCTTGACATAAGAGGAGATCCATACGGATTTCTAGCAGCGCATCCGTTGGCA 1256
||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 1218 TTTCATCAGCTTGACATAAGAGGAGATCCATACGGGTTTCTAGCGGCGCATCCATTGGCA 1277
Query 1257 CCACTTGTATCGTTGCATCACCTCGTTTACTTAGACCCAATGTTCCCTAACAAAAACCCG 1316
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1278 CCGCTTGTATCGTTGCATCACCTTGTTTACTTAGACCCAATGTTCCCTAACAAAAACCCG 1337
Query 1317 ATCGAGTCGTTACAGACCCTTATGAAACCTTATAACTTAGACCCAAATCGAATACTCCAA 1376
|||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||
Sbjct 1338 ATCGAGTCGTTACAGACCCTAATGAAACCTTATACCTTAGACCCGAATCGAATACTCCAA 1397
Query 1377 CAGGTTAATTGCCATGATCGCAAGCGTCAATGGTCTATATCCATCTCTTGGGGATACTCC 1436
||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1398 CAGATTAATTGTCATGATCGCAAACGTCAATGGTCTATATCCATCTCTTGGGGATACACC 1457
Query 1437 ATTCAGATCTACACTTACTTCTTGACTGCTACGGAGCTGAATACGCCGTTGCAGACCTTC 1496
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1458 ATTCAGATATACACTTACTTCTTGACTGCTACGGAGCTGACTACGCCGTTGCAGACCTTC 1517
Query 1497 AAAACTTGGCGGTCTTCCAGCGATGGACCTTTCGTGTTCAACACTCGGCCCTTGAAACCT 1556
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1518 AAAACTTGGCGGTCTTCCAGCGATGGACCTTTCGTGTTTAACACTCGGCCCTTGAAACCT 1577
Query 1557 GACCCGTGTGAGCGTCCCGTCATTTATTTCATGGATGGTGCAGAGGATGTGCGGGGTAGT 1616
||||| ||||||||||| |||| |||||||||||||||||| |||||||| |||| ||||
Sbjct 1578 GACCCCTGTGAGCGTCCGGTCACTTATTTCATGGATGGTGCCGAGGATGTACGGGATAGT 1637
Query 1617 GGGACGAAAACTTGGTATAGCATAGCGGATAAGAATTATGGTCATTGCGAAAAGAGTGAG 1676
||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||
Sbjct 1638 GGGACGAAAACTTGGTATAGCATAGGGGATAAGAACTATGGTCATTGCGGAAAGATTGAG 1697
Query 1677 CATACTCGGTTAACCAAAGTGAAGAGGATATTGGTGACTTCAATGAAGACGGATCCTGAG 1736
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1698 CATACTCGATTAACTAAAGTGAAGAGGATATTGGTGACTTCAATGAAGACGGATCCTGAG 1757
Query 1737 TATTGGAACAAGGCACCGAGGAGACAGTGTTGTGAGGTGATGGAAGGTGGGGGAGGAAAA 1796
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1758 TATTGGAACAAGGCACCGAGGAGACAGTGTTGTGAGGTGATGGAAGGAAAAGTAGGAAAA 1817
Query 1797 AGAATGGAAAAAGAAATGTTGATAAGGATTAGAAAATGCAGATCTTTGGAGAAGATATaa 1856
|||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1818 AGAAAAGAGAAAGAAATGTTGTTAAGGATTAGAAAATGCAGATCTTTGGAGAAGATATAA 1877
Query 1857 aaaaaGCGTTTTAATTAGAGAGATATATTTTTGCACATACAGATTTAGATTCGATCAT-A 1915
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |
Sbjct 1878 AAAAAGCGTTTTAATTAGAGAGAT-T-TTT--GCACATACAGATTTAGATTCGATCATTA 1933
Query 1916 GTTGTTTGTTTCTAAATTCCTCAATTCCTAGTACCAAGAGAATGGCGTACGATTTTCTCT 1975
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1934 GTTATTTGTTTCTAAATTCCTCAATTCCTAGTACCAAGAGAATG----ACGATTTTCTCT 1989
Query 1976 ATTAATACTGGCACTCTTGCGTTTTTCATCATGTAAACATTACTTTGTATAATTAGTCGA 2035
| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1990 AGTAATACTGGCACTCTT-CGTTTTTCAACATGTAAACATTACTTTGTATAATTAGTCTA 2048
Query 2036 TATAAAATAAATAG 2049
||| ||||||||||
Sbjct 2049 TATCAAATAAATAG 2062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101555702535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5