BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478482
Length=2072
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11450.1 | Symbols: | DnaJ domain ;Myb-like DNA-binding dom... 2013 0.0
AT5G06110.1 | Symbols: | DnaJ domain ;Myb-like DNA-binding dom... 918 0.0
> AT3G11450.1 | Symbols: | DnaJ domain ;Myb-like DNA-binding domain
| chr3:3605217-3608086 REVERSE LENGTH=2432
Length=2432
Score = 2013 bits (1090), Expect = 0.0
Identities = 1179/1223 (96%), Gaps = 2/1223 (0%)
Strand=Plus/Plus
Query 1 TTCATCATGCCGAGCCGGAGAAGTGAGTCTACCGTTAAGCTTATTACATACTCTGAGGAG 60
|||||||||||||||||||||||||||||| | ||| ||| ||||| ||||||||||||
Sbjct 241 TTCATCATGCCGAGCCGGAGAAGTGAGTCTGCTATTAGGCTAATTACGTACTCTGAGGAG 300
Query 61 CTTGAGGATGGAAAACCGTTCTTTGCTTTTTCCAATTGTCTTCCTGTGAAGGCTTTAAAC 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTTGTGGATGGAAAACCGTTCTTTGCTTTTTCCAATTGTCTTCCTGTGAAGGCTTTAAAC 360
Query 121 CGTGAACCTGCTGGTCATGCCTTCCATTCTGCTGCTCTTAAATTGCATGGTTGTGCAGAA 180
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 361 CGTGAACCTGCTGGTCATGCCTTCCATTCTGCTGCGCTTAAACTGCATGGTTGTGCAGAA 420
Query 181 GAACCCACAGACGATGAAGGTGGTGATAAGAAAGTGGGAGATGATAAAGAGAAGGAATAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAACCCACAGACGATGAAGGTGGTGATAAGAAAGTGGGAGATGATAAAGAGAAGGAATAT 480
Query 241 GTTCCTTCATTCAACTCGTATGCCAACAAAGGAAAAAAGAAGTCTGGTACCCAGCAACAA 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 481 GTTCCTTCATTCAACTCGTATGCCAACAAAGGAAAGAAGAAGTCTGGTACCCAGCAACAA 540
Query 301 GACCACTATGCCTTGTTGGGTTTGAGCAATTTAAGATATCTTGCGACAGAAGATCAGATT 360
||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 541 GACCACTATGCGTTGTTGGGTTTGAGCAATCTAAGATATCTTGCGACGGAAGATCAGATT 600
Query 361 AGGAAAAGCTATCGTGAAGCTGCGCTGAAGCATCATCCTGATAAACTCGCTACTCTCCTT 420
|||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 601 AGGAAAAGTTATCGTGAAGCTGCATTGAAGCATCATCCTGATAAACTCGCTAGTCTCCTT 660
Query 421 CTCGC-AGAGGAAACAGAAGAAGCCAAGGAGGCaaaaaaaGATGAGATAGAATCTCGCTT 479
|| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 661 CT-GTTAGAGGAAACAGAAGAAGCCAAGGAGGCAAAAAAAGATGAGATTGAATCTCGCTT 719
Query 480 CAAAGCGATTCAAGAAGCATATGAGATATTGATGGACCCAACAAGGAGAAGAATTTTTGA 539
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 720 CAAAGCGATTCAAGAAGCATATGAGGTATTGATGGACCCAACTAGGAGAAGAATTTTTGA 779
Query 540 CTCCACTGATGAGTTTGATGACGAGGTTCCATCAGATTGCTTGCCGCAAGACTTTTTCAA 599
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 780 CTCCACTGATGAGTTTGATGACGAGGTCCCATCGGATTGCTTGCCGCAAGACTTTTTCAA 839
Query 600 GGTGTTTGGTCCAGCTTTTAAAAGAAATGCTAGGTGGTCAGTGAATCAGCGTATTCCAGA 659
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 840 GGTGTTTGGTCCAGCGTTTAAGAGAAATGCTAGGTGGTCAGTGAATCAGCGTATTCCAGA 899
Query 660 TTTGGGAGATGAAAACACAACACTTAAAGATGTTGATAAGTTCTACAACTTTTGGTACGC 719
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TTTGGGAGATGAAAACACACCACTTAAAGATGTTGATAAGTTCTACAACTTTTGGTACGC 959
Query 720 TTTCAAGAGTTGGAGGGAATTTCCTGATGAAGAGGAGCATGATCTTGAACAAGCAGATTC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TTTCAAGAGTTGGAGGGAATTTCCTGATGAAGAGGAGCATGATCTTGAACAAGCAGATTC 1019
Query 780 CCGTGAAGAACGGAGGTGGATGGAGAAGGAGAATGCaaaaaaaaCTGTGAAGGCTAGAAA 839
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1020 CCGTGAAGAACGTAGGTGGATGGAAAAGGAGAATGCAAAAAAAACTGTGAAGGCTAGAAA 1079
Query 840 GGAGGAGCATGCTCGAATCCGGACTCTTGTTGACAATGCGTATagaaaagacccgaggat 899
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1080 GGAGGAGCATGCTCGAATCAGGACTCTTGTTGACAATGCGTATAGAAAAGACCCGAGAAT 1139
Query 900 tgtgaaaagaaaagaggaagaaaaggctgagaagcaacagaaaaaagaagcaaagcttct 959
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1140 TGTGAAAAGAAAAGAGGAAGAAAAGGCTGAGAAGCAACAGAAAAAAGATGCAAAAATTCA 1199
Query 960 ggccaagaagaagcAGGCAGAGGACGCTGCTATTGCTGCTgaagaagagaaaaggcgaaa 1019
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GGCCAAGAAGAAGCAGGAAGAGGACGCTGCTATTGCTGCTGAAGAAGAGAAAAGGCGAAA 1259
Query 1020 agaagaagaagaaaagcgagcagcagaatctgcacaacaacaaaagaaaactaaggaaaa 1079
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AGAAGAAGAAGAAAAGCGAGCAGCAGAATCTGCACAACAACAAAAGAAAACTAAGGAAAG 1319
Query 1080 agAGAAGAAGCTCTTACGCAAAGAACGGAATCGTCTTAGAACTCTCTCAGCTCCTCTCGT 1139
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1320 AGAGAAGAAGCTCTTACGCAAAGAACGAAATCGTCTTAGAACTCTCTCAGCTCCTCTCGT 1379
Query 1140 GGCTCAGCGTCTGCTTGGCATCTCCGAGGAAGATATAGAGAATCTATGCATGTCACTAAA 1199
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1380 GGCTCAGCGTCTGCTTGACATCTCTGAGGAAGATATAGAGAATCTATGCATGTCACTTAA 1439
Query 1200 CACCGAGCAGTTACAGACTCTAT 1222
|||||||||||| |||| |||||
Sbjct 1440 CACCGAGCAGTTGCAGAATCTAT 1462
Score = 1373 bits (743), Expect = 0.0
Identities = 817/853 (96%), Gaps = 4/853 (0%)
Strand=Plus/Plus
Query 1223 ATGGATGCGACAGTAGTAGAAACGACGAAGCCGAATCTAAAGAAAAAGAAAGTAAGAAGA 1282
|||||||| ||||||||||||| || |||||||||||||||||||||| |||||||||||
Sbjct 1514 ATGGATGCAACAGTAGTAGAAATGATGAAGCCGAATCTAAAGAAAAAGTAAGTAAGAAGA 1573
Query 1283 CCAACGGTGGCACAGAGCCTACACCCCGAGTTTCTCAGTTAGATAGTAGCACTCAGAAGA 1342
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1574 CCAACGGTGGCACAGAGCCTACAACCCGAGTTTCACAGTTAGATAGTAGCACTCAGAAGA 1633
Query 1343 AACAACCATGGAGCAAGGAAGAGATTGATATGCTGAGAAAAGGAATGATAAAATATCCAA 1402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1634 AACAACCATGGAGCAAGGAAGAGATTGATATGCTGAGAAAAGGAATGATAAAATATCCAA 1693
Query 1403 AGGGGACATCTCGAAGATGGGAAGTTGTTTCAGAGTACATTGGTACAGGAAGATCGGTAG 1462
|||||||||| || |||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1694 AGGGGACATCGCGGAGATGGGAAGTTATTTCAGAGTACATTGGTACAGGAAGATCTGTAG 1753
Query 1463 AGGAGATTCTGAAAGCAACTAAAACAGTTCTTCTCCAAAAACCAGATTCAGCTAAAGCAT 1522
|||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1754 AGGAAATTCTGAAAGCAACTAAAACAGTTCTCCTGCAAAAACCAGATTCAGCTAAAGCAT 1813
Query 1523 TCGATTCTTTCCTCGAGAAGAGGAAACCCTCTGCTTCAATCTCATCCCCTCTCTCCACAA 1582
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1814 TCGATTCTTTCCTCGAGAAGAGGAAACCCTCTGCTTCAATCACATCCCCTCTCTCCACAA 1873
Query 1583 GAGAGGAGCTCGGAGAATCTCTACCTACGGTGACTACCACGGCAAATGCAAAACCCTCTA 1642
||||||||||||||||||||||||| || |||| ||||| |||||||||| |||||||
Sbjct 1874 GAGAGGAGCTCGGAGAATCTCTACCCACAATGACGACCACAACAAATGCAAAGCCCTCTA 1933
Query 1643 GAGAGACTGTTGTGGGGAAGAGCTCGAGCAGTCAAAGCTCCGACAACAATGGTGAAGTAA 1702
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1934 AAGAGACTGTTGTGGGGAAAAGCTCGAGCAGTCAAAGCTCAGACAACAATGGTGAAGTAG 1993
Query 1703 GTGGAAGTTCAGACGCAGATAGTTGGTCAACTGTGCAAGAAAGAGCTTTGGTTCAAGCTT 1762
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1994 GTGGAAGTTCAGACGCAGATAGTTGGTCGACTGTGCAAGAAAGAGCTTTGGTTCAAGCTT 2053
Query 1763 TAAAGACATTCCCGAAAGAGACAAGCCAAAGATGGGAGAGAGTAGCTGCAGCTGTTCCTG 1822
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2054 TAAAGACATTCCCGAAAGAGACAAGCCAAAGATGGGAGAGAGTAGCTGCAGCTGTCCCTG 2113
Query 1823 GTAAAACGATGAACCAATGCAAGAAGAAGTTTGCAGAGCTTAAGGAAATCATTAGAAACA 1882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2114 GTAAAACGATGAACCAATGCAAGAAGAAGTTTGCAGAGCTTAAGGAAATCATTAGAAACA 2173
Query 1883 AGAAAACCGGAGTGTGAGGTAAAATCAATTCGGAGTCCCATGAGAATTTTGGGTTTGAAT 1942
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 2174 AGAAAACCGGAGTATGAGGTAAAATCATTTCGGAGTCCCATGAGAATTTTGGGTTTTAAT 2233
Query 1943 CCTCTTGGGGCACCGTTACTTTGCGAGAAG-ATAGACCTAAAACTTTTTTATTATTTGTA 2001
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 2234 CCTCTTGGGGCACCGTTACTTTGCGAGAAGCA-AGACCTAAAACTTTTTTATTATTTGTA 2292
Query 2002 ATGATTCATTTCCCTTTGTTGTCTCTATATATTGAGAGTGCTGGAGCCACTGTTATGGAG 2061
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 2293 ATGATTCATTTCCCTTTGATGTCTCTATATATTGAGAGTGCTGGAGCCACTATTATGGAG 2352
Query 2062 TAt-tt-tttttt 2072
||| || ||||||
Sbjct 2353 TATGTTGTTTTTT 2365
> AT5G06110.1 | Symbols: | DnaJ domain ;Myb-like DNA-binding domain
| chr5:1840830-1843872 REVERSE LENGTH=2479
Length=2479
Score = 918 bits (497), Expect = 0.0
Identities = 999/1237 (81%), Gaps = 52/1237 (4%)
Strand=Plus/Plus
Query 1 TTCATCATGCCGAGCCGGAGAAGTGAGTCTACCGTTAAGCTTA-TTACATACTCTGAG-G 58
|||||||||| ||| || ||| | | ||| | |||||| || |||||||||| || |
Sbjct 303 TTCATCATGCAGAGTTGGGGAATTAACTCTGCTATTAAGC-TACTTACATACTC-CAGTG 360
Query 59 AGCTTGAGGATGGAAAACCGTTCTTTGCTTTTTCCAATTGTCTTCCTGTGAAGGCTTTAA 118
||||| |||||||| || || ||| ||||| ||||||||||| |||||||||||||||||
Sbjct 361 AGCTTAAGGATGGACAAGCGCTCTATGCTTCTTCCAATTGTCATCCTGTGAAGGCTTTAA 420
Query 119 ACCGTGAACCTGCTGGTCATGCCTTCCATTCTGCTGCTCTTAAATTGCATGGTTGTGCAG 178
||||||||||||| |||||||||||||||||||||||||| ||| ||| |||||||||
Sbjct 421 ACCGTGAACCTGCGGGTCATGCCTTCCATTCTGCTGCTCTCAAACTGCGTGGTTGTGCT- 479
Query 179 AAG-AACCCACA-G-ACGAT-GAAGGTGGTGATAAGAAAGTGGG-AGATGATAAAGA-GA 232
||| || ||||| | | || |||| | |||||||| || | | || || || |
Sbjct 480 AAGGAAGCCACAAGCAAGAACGAAGATACCGATAAGAAGGTCCCTA-AGGAGAAGGATGG 538
Query 233 AGGAATATGTTCCTTCAT-TCAACTCGTATGCCAACAAAGGAAAAAAGAAGTCTGGTACC 291
| ||||| ||||||| | | | ||| || || ||||||||| |||||||| || |
Sbjct 539 TG-AATATATTCCTTCCTATGA-CTCCCATAACATCAAAGGAAAGAAGAAGTCGGGGAAG 596
Query 292 C-AGCAACAAGACCACTATGCCTTGTTGGGTTTGAGCAATTTAAGATATCTTGCGACAGA 350
| | ||||| || |||||||| |||||||||||| ||||||||||||||||||| |||||
Sbjct 597 CTA-CAACATGATCACTATGCGTTGTTGGGTTTGGGCAATTTAAGATATCTTGCAACAGA 655
Query 351 AGATCAGATTAGGAAAAGCTATCGTGAAGCTGCGCTGAAGCATCATCCTGATAAACTCGC 410
|||||||| || ||||| ||||| || ||||| ||||||||||| ||||||||||| ||
Sbjct 656 TGATCAGATCAGAAAAAGTTATCGCGATGCTGCACTGAAGCATCACCCTGATAAACTGGC 715
Query 411 TACTCTCCTTCT-CGCAGAGGAAACAGAAGAAGCCAAGGAGGCaaaaaaaGATGAGATAG 469
|||||| ||||| | ||||| ||||||||||| || | || ||||| ||||||||||
Sbjct 716 TACTCTACTTCTTCTT-GAGGAGACAGAAGAAGCAAAACAAGCCAAAAAGGATGAGATAG 774
Query 470 AATCTCGCTTCAAAGC-GATTCAAGAAGCATATGAGATATTGATGGACCCAACAAGGAGA 528
|||||| |||||| | |||||||||||| |||||| | ||||||||| |||||| |||
Sbjct 775 AATCTCACTTCAA-GTTGATTCAAGAAGCTTATGAGGTTTTGATGGACTCAACAAAAAGA 833
Query 529 AGAATTTTTGACTCCACTGATGAGTTTGATGACGAGGTTCCATCAGATTGCTTGC-CGC- 586
||||| |||||||| || ||||||||||||||| | || ||| | ||||| | || | |
Sbjct 834 AGAATATTTGACTCTACAGATGAGTTTGATGACAAAGTCCCAACTGATTG-T-GCTCCCC 891
Query 587 AAGACTTTTTCAAGGTGTTTGGTCCAGCTTTTAAAAGAAATGCTAGGTGGTCAGTGAAT- 645
||||||| |||||||| ||||||||||| ||||| ||||| || ||||||||| |||
Sbjct 892 AAGACTTCTTCAAGGTTTTTGGTCCAGCATTTAAGAGAAACGCAAGGTGGTCA---AATT 948
Query 646 CAGCGTATT-CCAGATTTGGGAGATGAAAACACAACACTTAAAGATGTTGATAAGTTCTA 704
| || | || |||||||||||||||||||| ||| |||||||||| ||||||| ||||||
Sbjct 949 C-GCCT-TTACCAGATTTGGGAGATGAAAATACACCACTTAAAGAGGTTGATAGGTTCTA 1006
Query 705 CA--ACTTTTGGTACGCTTTCAAGAGTTGGAGGGAATTTCCTGATGAAGAGGAGCATGAT 762
|| |||| ||||| |||| || || ||||| || |||||||| |||||||||||||||
Sbjct 1007 CAGTACTT--GGTACACTTTTAAAAGCTGGAGAGAGTTTCCTGAAGAAGAGGAGCATGAT 1064
Query 763 CTTGAACAAGCAGATTCCCGTGAAGAACGGAGGTGGATGGAGA-AGGAGAATGCaaaaaa 821
| || ||||| || ||||| || ||| |||||||||||||| || ||||||||| |||
Sbjct 1065 ATCGAGCAAGCTGAATCCCGCGAGGAAAAGAGGTGGATGGAGAGAG-AGAATGCAAGAAA 1123
Query 822 aaCTGTGAAGGCTAGAAAGGAGGAGCATGCTCGAATCCGGACTCTTGTTGACAATGCGTA 881
|||| |||||||||||||||||| ||||||| || |||||||||| ||||| || ||
Sbjct 1124 AACTCAGAAGGCTAGAAAGGAGGAATATGCTCGGATTAGGACTCTTGTGGACAACGCATA 1183
Query 882 Tagaaaagacccgaggattgtgaaaagaaaagaggaagaaaaggctgagaagcaacagaa 941
|| ||||||| || || ||||||||| || || ||||||||| |||||| |||||
Sbjct 1184 TAAAAAAGACATAAGAATACAGAAAAGAAAGGATGACGAAAAGGCTAAGAAGCTGCAGAA 1243
Query 942 aaaagaagcaaa-gcttctggccaagaagaagcAGGCAGAGGAC-GCTGCTATTGCTGCT 999
||||||||||| | || ||||||||| | |||||| ||| | | |||||| ||| |
Sbjct 1244 GAAAGAAGCAAAAG-TTATGGCCAAGAGGCAGCAGGAAGAAG-CTGCTGCTGCAGCTATT 1301
Query 1000 gaagaagagaaaaggcgaaaagaagaagaag-aaaagcgagcagcagaatctgcacaaca 1058
||||||||||||||||||||||||||||||| |||| || || ||||| |||| || |
Sbjct 1302 GAAGAAGAGAAAAGGCGAAAAGAAGAAGAAGCAAAA-CGTGCGGCAGAGGCTGCTCAGCT 1360
Query 1059 acaaaagaaaactaaggaaaaagAGAAGAAGCT-CTTACGCAAAGAACGGAA-TCGTCTT 1116
|| |||| | | ||||||| |||||||||||| || ||||||||||| || ||| ||
Sbjct 1361 GCACAAGAGAGCCAAGGAAAGAGAGAAGAAGCTTCTG-CGCAAAGAACG-AAGTCGGCTC 1418
Query 1117 AGAACTCTCTCAGCTCCTCT-CGTGGCTCAGCGTCTGCTTGGCATCTCCGAGGAAGATAT 1175
||| |||||| || ||| | | || | ||||||||||||||||| || || ||| || |
Sbjct 1419 AGAGTTCTCTCCGCCCCTGTTC-TGTCCCAGCGTCTGCTTGGCATATCTGATGAACATGT 1477
Query 1176 AGA-GAATCTATGCATGTCACTAAACACCGAGCAGTT 1211
|| || ||||||||||||||| ||||||||||||||
Sbjct 1478 GGAAGA-TCTATGCATGTCACTTAACACCGAGCAGTT 1513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102710315070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5