BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478539
Length=973
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11930.3 | Symbols: | Adenine nucleotide alpha hydrolases-l... 848 0.0
> AT3G11930.3 | Symbols: | Adenine nucleotide alpha hydrolases-like
superfamily protein | chr3:3776237-3777694 FORWARD LENGTH=1116
Length=1116
Score = 848 bits (459), Expect = 0.0
Identities = 591/649 (91%), Gaps = 31/649 (5%)
Strand=Plus/Plus
Query 1 ATGTATATCTTATTGCACGTGTCCGGTGCACTTTGAGACGGATCATCCTCTACATGCAAT 60
||| ||||||||||||||||| ||||||| |||||||||| |||| ||||||||||||||
Sbjct 1 ATGCATATCTTATTGCACGTGGCCGGTGCCCTTTGAGACGTATCACCCTCTACATGCAAT 60
Query 61 ATAAAAAGCATTGGAAATGAAACAAAGTTTG---------ATCAC--ATAACT----A-A 104
||||||||||||| ||||||| ||||||||| ||||| |||||| | |
Sbjct 61 ATAAAAAGCATTGCAAATGAACCAAAGTTTGATCACATCCATCACTTATAACTAAAAACA 120
Query 105 -AAA-C-------AATGGCGGAAGATCAAGCAACGACGGCAATGGAAACATCGGCGGTGG 155
||| | |||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 121 CAAATCAAGATAAAATGGCGGAAGAGCAAGCAGCGACGGCAATGGAAACATCGGCGGTGG 180
Query 156 AGAAGCAGCCAGAGACGACGACAGAGGCTGAACCACCAAGTTTGACGACGAAGAGGATGG 215
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 AGAAGCAGCCAGAGACGACGACAGAGGCTGAAGCACCAAGTTTGACGACGAAGAGGATGG 240
Query 216 TGGTTGCGATCGATGAGAGCGACTCGAGCTTCTACGCTCTCCAATGGGTCATTGACCATT 275
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGGTTGCGATTGATGAGAGCGACTCGAGCTTCTACGCTCTCCAATGGGTCATTGACCATT 300
Query 276 TCTCTAACCTTTTATTGACCACT-CAGGCAGCCGAGGCGGAAAGTGGAATGCTCACGGTG 334
||||||| |||||||||||||| | |||||| |||||||||||||||||||||||||||
Sbjct 301 TCTCTAATCTTTTATTGACCACAGC-GGCAGCTGAGGCGGAAAGTGGAATGCTCACGGTG 359
Query 335 GTTCATGTGCAGTCCCCTTTCCATCACTTTGCTGCCTTTCCGGCTGGACCTGGCGGCGCC 394
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 360 ATTCATGTGCAGTCCCCTTTCAATCACTTTGCTGCCTTTCCGGCTGGACCGGGCGGCGCC 419
Query 395 ACAGCAGTGTACGCATCTTCGA-CAATGATAGAGTCAGTGAAGAAAG-CACAACAAGAGA 452
|||||||||||||||||||| | ||||||||||||||||||| |||| ||||||||||||
Sbjct 420 ACAGCAGTGTACGCATCTTC-ATCAATGATAGAGTCAGTGAA-AAAGGCACAACAAGAGA 477
Query 453 CCTCTGCTGCGCTTCTCTCTCGTGCTCTCCAAATGTGCAGAGCCAAACAGATACGTACTG 512
|||||||||| ||||||||||| ||||||||||||||| ||||||| |||||||||||||
Sbjct 478 CCTCTGCTGCCCTTCTCTCTCGCGCTCTCCAAATGTGCCGAGCCAAGCAGATACGTACTG 537
Query 513 AAACTCTAGTCCTTGAAGGCGACGCGAAGGAGATGATTTGCGAGGCGGTGGAGCAAATGC 572
|||||||||| || |||||||| ||||||||||||||||| |||||||||||| ||||||
Sbjct 538 AAACTCTAGTGCTAGAAGGCGAGGCGAAGGAGATGATTTGTGAGGCGGTGGAGAAAATGC 597
Query 573 ACGTTGATCTTCTCGTTGTCGGTAGTCGTGGCCTTGGCAAGATCAAAAG 621
||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 598 ACGTTGATCTTCTCGTTGTGGGTAGTCGTGGCCTTGGCAAGATCAAAAG 646
Score = 307 bits (166), Expect = 1e-82
Identities = 287/338 (85%), Gaps = 37/338 (11%)
Strand=Plus/Plus
Query 619 AAGAGCGTTTCTTGGGAGCGTCAGCGATTACTGCGCTCATCACGCCCACTGCCCCATCCT 678
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 722 AAGAGCGTTTCTTGGGAGCGTTAGCGATTACTGCGCTCATCACGCCAACTGCCCCATCCT 781
Query 679 TATTGTCAAGCCACCTAAGGAGATGACTAAGTAATATGGATCTGGTTACATGTTTGGGTT 738
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 782 TATTGTCAAGCCACCTAAGGAGATGACTAAGTAATATGGAGCTGTTTACATGTTTGGGTT 841
Query 739 ATTAAT--GA----------GA-T-T----T--TT-A--Taaaaaa-aaaaaaaa-aaaa 773
|||| | || || | | | || | ||||||| |||||||| ||||
Sbjct 842 ATTAGTACGAATTTTATAATGAGTGTGCCATAATTTACCTAAAAAAGAAAAAAAAGAAAA 901
Query 774 ---GAGTGTTGTACGTACGTATGTGTTTTGACTTGGATAATTAGTTACATATTAAGCAAA 830
|||||||||| |||||| |||||| |||||||||||||||| |||| |||||||||
Sbjct 902 AAAGAGTGTTGTATGTACGT--GTGTTT-GACTTGGATAATTAGTGACATTTTAAGCAAA 958
Query 831 AT-TGTATTTGGAAAAGTAATGTGTCAATCAAATATGAATATAGGTCGAATAATGAAGCG 889
| ||||||||||||||| |||| |||| |||||||||||| |||||||||| ||||||
Sbjct 959 -TGTGTATTTGGAAAAGTGATGT--CAATGAAATATGAATATGGGTCGAATAAAGAAGCG 1015
Query 890 AAGA-CTTGTAGTCTGTTGCTTCTCTGCACCTGTTGTT 926
|||| || |||| |||||||||||||||| ||||||||
Sbjct 1016 AAGATCT-GTAGACTGTTGCTTCTCTGCATCTGTTGTT 1052
Score = 62.1 bits (33), Expect = 1e-08
Identities = 44/49 (90%), Gaps = 2/49 (4%)
Strand=Plus/Plus
Query 926 TATTGTTGTATGTTTATAATTTATTAAAAGCATCTTTTCTTTCC-AATT 973
|||||||||||||||||||||||||||||||| || |||| || ||||
Sbjct 1066 TATTGTTGTATGTTTATAATTTATTAAAAGCAAATTGTCTT-CCTAATT 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47621971356
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5