BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478568
Length=1566
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12120.1 | Symbols: FAD2 | fatty acid desaturase 2 | chr3:38... 2590 0.0
> AT3G12120.1 | Symbols: FAD2 | fatty acid desaturase 2 | chr3:3860285-3863050
REVERSE LENGTH=1635
Length=1635
Score = 2590 bits (1402), Expect = 0.0
Identities = 1501/1549 (97%), Gaps = 6/1549 (0%)
Strand=Plus/Plus
Query 1 CATCTGACCACCAGAAGAAGAGCCACACACTCACAAATTAAATAAAAagagagagagaag 60
||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| ||
Sbjct 16 CATCTGACCACCAGAAGAAGAGCCACACACTCACAAATT-AA-AAAGAGAGAGAGAG-AG 72
Query 61 agaga-aaagagagagagagagaTTCTGCGGAGGAGCTTCTTCTTCGTAGGGTGTTCATC 119
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 AGAGAGACAGAGAGAGAGAGAGATTCTGCGGAGGAGCTTCTTCTTCGTAGGGTGTTCATC 132
Query 120 GTTATTAACGTTATC-TCCCTACGTCAGCTCAATCTCCAGAAACATGGGTGCAGGTGGAA 178
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 133 GTTATTAACGTTATCGCCCCTACGTCAGCTCCATCTCCAGAAACATGGGTGCAGGTGGAA 192
Query 179 GAATGCCGGTTCCTACTTCTTCCAAGAAATCGGAAACCGACACCATAAAGCGTGTGCCGT 238
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 193 GAATGCCGGTTCCTACTTCTTCCAAGAAATCGGAAACCGACACCACAAAGCGTGTGCCGT 252
Query 239 GCGAGAAACCGCCTTTCTCGGTGGGAGATCTGAAGAAAGCAATCCCCCCGCATTGTTTCA 298
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 253 GCGAGAAACCGCCTTTCTCGGTGGGAGATCTGAAGAAAGCAATCCCGCCGCATTGTTTCA 312
Query 299 AACGCTCAATCCCTCGCTCTTTCTCCTACCTTATCAGTGACATCATTATTGCCTCATGCT 358
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 313 AACGCTCAATCCCTCGCTCTTTCTCCTACCTTATCAGTGACATCATTATAGCCTCATGCT 372
Query 359 TCTACTACGTTGCCACCAATTACTTCTCTCTCCTACCTCAGCCTCTCTCTTACTTGGCTT 418
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 373 TCTACTACGTCGCCACCAATTACTTCTCTCTCCTCCCTCAGCCTCTCTCTTACTTGGCTT 432
Query 419 GGCCACTCTATTGGGCATGTCAAGGCTGTGTCCTAACTGGTGTCTGGGTCATAGCCCACG 478
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 433 GGCCACTCTATTGGGCCTGTCAAGGCTGTGTCCTAACTGGTATCTGGGTCATAGCCCACG 492
Query 479 AATGCGGTCACCACGCATTCAGTGACTACCAATGGCTGGATGACACAGTCGGTCTTATCT 538
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 493 AATGCGGTCACCACGCATTCAGCGACTACCAATGGCTGGATGACACAGTTGGTCTTATCT 552
Query 539 TCCACTCCTTCCTCCTCGTCCCTTACTTTTCCTGGAAGTATAGTCATCGCCGTCACCATT 598
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 553 TCCATTCCTTCCTCCTCGTCCCTTACTTCTCCTGGAAGTATAGTCATCGCCGTCACCATT 612
Query 599 CCAACACGGGATCCCTCGAAAGAGATGAAGTATTTGTCCCAAAGCAGAAATCCGCAATCA 658
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 613 CCAACACTGGATCCCTCGAAAGAGATGAAGTATTTGTCCCAAAGCAGAAATCAGCAATCA 672
Query 659 AGTGGTACGGCAAATACCTCAACAACCCTCTTGGACGCATCATGATGTTAACCGTCCAGT 718
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 AGTGGTACGGGAAATACCTCAACAACCCTCTTGGACGCATCATGATGTTAACCGTCCAGT 732
Query 719 TTGTCCTCGGGTGGCCCTTGTACTTAGCCTTTAACGTTTCGGGCAGACCGTATGACGGGT 778
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 733 TTGTCCTCGGGTGGCCCTTGTACTTAGCCTTTAACGTCTCTGGCAGACCGTATGACGGGT 792
Query 779 TCGCTTGCCATTTCTTCCCCAACGCTCCCATCTACAATGACCGCGAACGCCTCCAGATAT 838
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 793 TCGCTTGCCATTTCTTCCCCAACGCTCCCATCTACAATGACCGAGAACGCCTCCAGATAT 852
Query 839 ACCTCTCGGATGCGGGTATTCTAGCCGTCTGTTTTGGTCTTTACCGTTACGCCGCTGCAC 898
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 853 ACCTCTCTGATGCGGGTATTCTAGCCGTCTGTTTTGGTCTTTACCGTTACGCTGCTGCAC 912
Query 899 AAGGAATGGCCTCTATGATCTGCCTCTACGGAGTACCGCTTCTGATAGTGAATGCGTTCC 958
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 AAGGGATGGCCTCGATGATCTGCCTCTACGGAGTACCGCTTCTGATAGTGAATGCGTTCC 972
Query 959 TCGTCTTGATCACTTACTTGCAGCACACTCACCCCTCCTTGCCTCACTACGATTCATCAG 1018
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 973 TCGTCTTGATCACTTACTTGCAGCACACTCATCCCTCGTTGCCTCACTACGATTCATCAG 1032
Query 1019 AGTGGGACTGGCTCAGGGGAGCTTTGGCTACCGTAGACAGAGACTATGGAATCTTGAACA 1078
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1033 AGTGGGACTGGCTCAGGGGAGCTTTGGCTACCGTAGACAGAGACTACGGAATCTTGAACA 1092
Query 1079 AGGTGTTCCACAACATTACAGACACACACGTGGCACATCACCTGTTCTCGACAATGCCGC 1138
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1093 AGGTGTTCCACAACATTACAGACACACACGTGGCTCATCACCTGTTCTCGACAATGCCGC 1152
Query 1139 ATTATAACGCAATGGAAGCTACAAAGGCGATAAAGCCAATACTGGGAGACTATTACCAGT 1198
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1153 ATTATAACGCAATGGAAGCTACAAAGGCGATAAAGCCAATTCTGGGAGACTATTACCAGT 1212
Query 1199 TCGATGGAACACCGTGGTATGTGGCGATGTATAGGGAGGCAAAGGAGTGTATCTATGTAG 1258
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1213 TCGATGGAACACCGTGGTATGTAGCGATGTATAGGGAGGCAAAGGAGTGTATCTATGTAG 1272
Query 1259 AACCGGACAGGGAAGGTGACAAGAAAGGTGTTTACTGGTACAACAATAAGTTATGAGGAT 1318
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1273 AACCGGACAGGGAAGGTGACAAGAAAGGTGTGTACTGGTACAACAATAAGTTATGAGGAT 1332
Query 1319 GATGGTGAAGAAATTGTCGACCTTTCTCTTGTCTGGTTGTCTTTTGTTTAAGAAGCTATG 1378
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1333 GATGGTGAAGAAATTGTCGACCTTTCTCTTGTCTGTTTGTCTTTTGTTAAAGAAGCTATG 1392
Query 1379 TTTTGTTTCAATAATCTTATTGTCCATTCTGTTGTGTTATGACATTTTGGCTGCTCATTA 1438
|| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1393 CTTCGTTTTAATAATCTTATTGTCCATTTTGTTGTGTTATGACATTTTGGCTGCTCATTA 1452
Query 1439 TGTGACGTGGGAAGTTAAGTGTTCAAATGTTTTGTGTCTGTATTGTTCTTCTCATCGCTG 1498
||| | ||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1453 TGTTATGTGGGAAGTTA-GTGTTCAAATGTTTTGTGTCGGTATTGTTCTTCTCATCGCTG 1511
Query 1499 TTTTCTTGGGATCGTAGAAATGTGACCTTCGGACAGTAAAACTCTTGTA 1547
|||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1512 TTTTGTTGGGATCGTAGAAATGTGACCTTCGGACAGTAAAACTCTTGTA 1560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77308839300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5