BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478622
Length=917
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12630.1 | Symbols: | A20/AN1-like zinc finger family prote... 1157 0.0
> AT3G12630.1 | Symbols: | A20/AN1-like zinc finger family protein
| chr3:4012608-4013583 FORWARD LENGTH=976
Length=976
Score = 1157 bits (626), Expect = 0.0
Identities = 861/962 (90%), Gaps = 65/962 (7%)
Strand=Plus/Plus
Query 1 CTATCTCTCTCTCCTCGA-AATCGATCCGTAAACTCGCCGGAGGGGCAGGGAGATTCAAT 59
|||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||
Sbjct 35 CTATCTCTCTCTCCTC-ATAATCGATCCGTAAACTCGCCGGAGGAGCAGGGAGATTCAAT 93
Query 60 AAGACGATGGCTCAGAGAACGGAGAAGGAAGAGACGGAGTTCAAAGTTCTTGAAACCTTG 119
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 94 AAGACGATGGCTCAGAGAACGGAGAAGGAAGAGACCGAGTTCAAAGTTCTCGAAACCTTG 153
Query 120 ACGACAACAACAACAACGACGCTATGTACCAATAACTGCGGCGTTACAGCGAATCCTTCG 179
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 154 ACG---ACAACAACAACGACGTTATGTACCAATAACTGCGGCGTTACAGCGAATCCTGCG 210
Query 180 ACGAACAACATGTGTCAGAAATGTTTCAACGCATCTCTCGTCTCGGCGGCCGCCGGTGTT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 211 ACGAACAACATGTGTCAGAAATGTTTCAACGCATCTCTCGTCTCGGCGGCCGCAGGTGTT 270
Query 240 GTTGAATCAGGCTCGATCTTGAAGAGATCGGCGAGATCTGTCAATCTTCGGTCATCACCA 299
||||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 271 GTTGAATCAGGTTCGATCTTGAAGAGATCGGCTAGATCTGTCAATCTTCGTTCGTCACCA 330
Query 300 GCTAAAGTCGTGATTCGTGCGAGAGAGATCGATGCGGTGAAGA-GAGA--TCAACAGATC 356
|||||||||||||||||| | |||||||||||||||||||||| |||| ||||||||||
Sbjct 331 GCTAAAGTCGTGATTCGTCCAAGAGAGATCGATGCGGTGAAGAAGAGAGATCAACAGATC 390
Query 357 GTAAACCGATGTTCTGGTTGTCGGAAGAAGGTTGGGTTGACCGGATTCAGGTGCCGATGC 416
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 391 GTAAACCGATGTTCTGGTTGTCGGAAGAAAGTTGGGTTGACCGGATTCAGGTGCCGATGC 450
Query 417 GGTGAGCTTTTCTGCTCCGAGCACCGTTACTCCGATCGTCATGATTGTAGCTACGACTAC 476
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 GGTGAGCTTTTCTGCTCAGAGCACCGTTACTCCGATCGTCATGATTGTAGCTACGACTAC 510
Query 477 AAAACCGCCGGTCGTGAGGCGATCGCTAGGGAAAATCCGGTGGTCAAGGCGGCGAAGATG 536
|||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 511 AAAACCGCTGGTCGTGAGGCGATCGCTAGAGAAAATCCGGTGGTCAAGGCTGCGAAAATG 570
Query 537 GTCAAAGTTTAAA---TTAAAA-TTCGATCTCAACCGTTGAAAA-CTTGTGGTGGTTCGA 591
||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||| |
Sbjct 571 GTCAAAGTTTAAAAAATTAAAAATTCGATCTCAACCGTTGAAAAACTTGTGGTGGTTCAA 630
Query 592 A-GCTCCGATCTATACGATCGGAAGAGAT-GGTCGGAGA--CATCGATTTGAATTGGTGC 647
| ||||||||| | | | | ||||| ||||||||| ||| ||||||| ||||||
Sbjct 631 AAGCTCCGATCGG-A--A--G-A-GAGATTGGTCGGAGAGACATGGATTTGATTTGGTGA 683
Query 648 TGTGTTGTAAAAGAAGAT-A-A-ATCTGAA-CCTC-C---AAtt-----t-t-----t-a 687
|||||||||||||||||| | | | | | |||| | || | | | | |
Sbjct 684 TGTGTTGTAAAAGAAGATCAGAGAGATTATTCCTCTCCTCAAATCAAAATCTGAACCTCA 743
Query 688 -tttttttt---acgttttt----catcttttaatttatatattagtgaatgattattat 739
|||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 744 ATTTTTTTTTTTACGTTTTTTTTTCATCTTTTAATTTATATATTAGTGAATGATTATTAA 803
Query 740 tattattattGTGTGGCTTACGGATTCATGAATTTGCCTCTTGATCATCGAGAAATG-TG 798
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 804 TATTATTATTGTGTGGCTTACGGATTCATGAATTTGCTTCTTGATCATCGAGAAATGGTG 863
Query 799 TATGTAGGATATGGTAGAAACGAAGGGGTGGATTGGTAATTTAGGAACGTGTCTCTCTGG 858
|||||| | | ||| ||||||||| | |||||||||||||||| ||||| |||||
Sbjct 864 TATGTA--A---G--AGA--CGAAGGGGTTGTTTGGTAATTTAGGAACATGTCTTTCTGG 914
Query 859 TTTCGTT-CGTTTCGTGTGGTAGATGTACTTATCACGG-A-TACTAGTCCATTGTGCGTC 915
||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 915 TTTCGTTTCGTTTCGTGTGGTAGATGTACTTATCACGATACTACTAGTCCATTGTGCGTC 974
Query 916 AC 917
||
Sbjct 975 AC 976
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44808859124
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5