BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478654
Length=1446
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12920.1 | Symbols: | SBP (S-ribonuclease binding protein) ... 2128 0.0
> AT3G12920.1 | Symbols: | SBP (S-ribonuclease binding protein)
family protein | chr3:4121883-4123508 REVERSE LENGTH=1437
Length=1437
Score = 2128 bits (1152), Expect = 0.0
Identities = 1366/1462 (93%), Gaps = 43/1462 (3%)
Strand=Plus/Plus
Query 1 GCTTTGATATTTGTTTTTTAGTTTCTCCCTCTATCTCTCTGCGA-AAACCGTAATT-AAA 58
|||||||||||||||||||||||||| | || ||||||||| | ||||||||||| |||
Sbjct 1 GCTTTGATATTTGTTTTTTAGTTTCT--C-CT-TCTCTCTGC-AGAAACCGTAATTAAAA 55
Query 59 cccccccACAACACATCCTCTTCAACATAACTTCTTCTTCTTCCATCTTTCGTTGCTTTC 118
|||||||| | || | ||||||||||||| |||||||||||||||||||||||| |||
Sbjct 56 ACCCCCCAC-A-AC-T--TCTTCAACATAACGTCTTCTTCTTCCATCTTTCGTTGCATTC 110
Query 119 ACGTTTTTAGAGGTTCTCTGAATCACCCCCATT-AAAATAGCTTTGAACGAGTTTTCAT- 176
||||||||| ||||||||||||||| | ||||| ||||||||||||||| ||||||| |
Sbjct 111 ACGTTTTTAAAGGTTCTCTGAATCA-CTCCATTAAAAATAGCTTTGAACAAGTTTTC-TC 168
Query 177 AATAGTCAAC--AAACAATGGCCGTTGAAGCTCACCATCTTAATCCTCTGTTTTCTTCCA 234
|||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 169 AATAGTCAACAAAAACAATGGCCGTTGAAGCTCACCATCTAAATCCTCTGTTCTCTTCCA 228
Query 235 ACAGAGAAATGATTCATCCCGTTGAAGCAAACGGCT-TAGTCTATAACACCCAGATGAGA 293
|||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||
Sbjct 229 ACAGAGAAATGATTCATCCCGTTGAAGCAAGCGG-TGTAGTCTATAACACCCAGATGAGA 287
Query 294 TACGGCACCGTTCCGACGTTTAACCCTACTGTAGAATGTCAAACTTCTCTGTTTAATCCA 353
|||||||||||||||||||||||||| || || ||||||||||||||||||||||| |||
Sbjct 288 TACGGCACCGTTCCGACGTTTAACCCCACCGTGGAATGTCAAACTTCTCTGTTTAACCCA 347
Query 354 ATCTACAACATCTCACCAGTTGATGGTTTGGTTCATCAATCCATGAAACCAACGATACAA 413
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 348 ATCTACAACATCTCACCAGTCGATCGTTTGGTTCATCAATCCATGAAACCAACGATACAG 407
Query 414 TCCGTTGATAGTTCTGTCACATTCAACAGCG---AGAA---CGATTTTCTTCGTCCTGTG 467
||||||||||||||| ||||||||||||||| | || |||||||||||||||||||
Sbjct 408 TCCGTTGATAGTTCTCTCACATTCAACAGCGACAACAACGTCGATTTTCTTCGTCCTGTG 467
Query 468 TCGTCGAGAAAACGTTCTAGAGAAGAATCTGTTGTTTTAAATCCTTCCGCTTATATGCAA 527
||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||
Sbjct 468 TCGTCGAGAAAACGTTCTAGAGAAGAATCCGTTGTTCTAAACCCTTCCGCTTATATGCAA 527
Query 528 AGCCAGAAAAATCCCACGGATCCTCTCATGTTCCTTGGCCAAGACTTGTCTTCTAACGTC 587
| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 528 ATTCAGAAAAATCCCACCGATCCTCTTATGTTCCTTGGCCAAGACTTGTCTTCTAACGTT 587
Query 588 CAACAACATCATTTCGATATCGATCGTTTGATCTCTAATCACGTTGAGAGAATGAGAATG 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 CAACAACATCATTTCGATATCGATCGTTTGATCTCTAATCACGTTGAGAGAATGAGAATG 647
Query 648 GAAATTGAAGAGAAGAGAAAATCACAAGGGAGGAGGATAGTGGAAGCCGTGGAACAAGGT 707
|| |||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||
Sbjct 648 GAGATTGAAGAGAAGAGAAAAACACAAGGGAGAAGGATAGTGGAAGCCGTCGAACAAGGT 707
Query 708 TTGATGAAGACACTAAGAGCCAAAGACGAAGAGATAAATCACATCGGGAAACTAAACCTA 767
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 708 TTGATGAAGACACTAAGAGCCAAAGACGATGAGATAAATCACATCGGGAAACTAAACCTC 767
Query 768 TTTCTAGAAGAGAAGGTCAAGTCTTTGTGCGTAGAGAATCAGATATGGCGTGACGTGGCA 827
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 TTTCTCGAAGAGAAGGTTAAGTCTTTGTGCGTAGAGAATCAGATATGGCGTGACGTGGCA 827
Query 828 CAGTCTAATGAAGCCACCGTAAACGCCCTCCGTTCCAACTTACAACAAGTTCTCGCTGCC 887
||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| |||
Sbjct 828 CAGTCTAATGAAGCCACCGTAAACGCCCTACGTTCTAACTTGCAACAAGTTCTCGCAGCC 887
Query 888 GTTGAGCGTAACCGGTGGGAGGAGCCGCCCACGGTGGCAGACGACGCGCAGTCTTGTTGC 947
|| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 888 GTGGAGCGTAACCGGTGGGAGGAGCCGCCCACGGTGGCTGACGACGCACAGTCTTGTTGC 947
Query 948 GGTAGCAACGACGAAGGTGATAGCGAGGAAGAGCGGTGGAAGTTAGCGGGAGAGGCGCAG 1007
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 948 GGTAGCAACGACGAAGGTGATAGCGAGGAAGAACGGTGGAAGTTAGCGGGAGAGGCGCAG 1007
Query 1008 GATACGAAAAAGATGCGTAGGGTAGGGATGAGTATGTGTAGAAGCTGTGGGAAAGGAGAA 1067
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 GATACGAAAAAGATGTGTAGGGTAGGGATGAGTATGTGTAGAAGCTGTGGGAAAGGAGAA 1067
Query 1068 GCAAGTGTGTTACTGTTACCGTGCAGACACATGTGTCTATGTACTGTGTGTGGTTCTTCA 1127
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1068 GCAAGTGTGTTACTGTTACCGTGCAGACACATGTGTCTATGTTCTGTGTGTGGCTCTTCA 1127
Query 1128 CTCAACACTTGTCCCATTTGTAAATCTCCAAAGAACGCTAGTCTACATGTTAATCTTTCC 1187
|||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1128 CTCAACACTTGTCCTATATGTAAATCTCCAAAGACCGCTAGTCTACATGTTAATCTTTCC 1187
Query 1188 TCTTAGTA--TAACCCAATACCAGTAAAATTGTATATGTCCC-aaaaaaaGTAAATAGTA 1244
|||||| | ||||| |||||||||||||| ||| ||| ||| |||||||||||||||||
Sbjct 1188 TCTTAG-ACCTAACC-AATACCAGTAAAAT-GTAAATGCCCCCAAAAAAAGTAAATAGTA 1244
Query 1245 GAAAAAAGTTCCTTGGTTGAAAGAAAACTGTTCATTCtttttttCTCTCGTCTTTGGATT 1304
|| ||||||| ||||||| ||| || ||||||||||||||||| || || ||||
Sbjct 1245 GACAAAAGTTTCTTGGTT-AAA-AA--CTGTTCATTCTTTTTTT-----GT-TT-GGATG 1293
Query 1305 GTGATGATGATGATGGAACACGAATCTTTGACATATGTGTCAGATCTTTAAATTTCGTAA 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 GTGATGATGATGATGGAACACGAATCTTTGACATATGTGTCAGATCTTTAAATTTCGTAA 1353
Query 1365 GGGGTTCACGAGGGACCTCTGTTGCTAAAAATCGTGGGTTAGGTTTATACCCACTTTCAA 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1354 GGGGTTCACGAGGGACCTCTGTTGCTAAAAATCGTGGGTTAGGTTTATACCCACTTTCAA 1413
Query 1425 TGTCATTTCCCATCTTTGTATG 1446
||||||||||||||||||||||
Sbjct 1414 TGTCATTTCCCATCTTTGTATG 1435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71284773900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5