BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478672 Length=1885 Score E Sequences producing significant alignments: (Bits) Value AT3G13040.1 | Symbols: | myb-like HTH transcriptional regulato... 2586 0.0 AT1G55964.1 | Symbols: | pseudogene of myb family transcriptio... 195 2e-48 > AT3G13040.1 | Symbols: | myb-like HTH transcriptional regulator family protein | chr3:4172142-4175227 REVERSE LENGTH=1881 Length=1881 Score = 2586 bits (1400), Expect = 0.0 Identities = 1735/1895 (92%), Gaps = 30/1895 (2%) Strand=Plus/Plus Query 1 CGACGGCGATTTCGTAGCCAAAtcttcgtcttcttcctttaaccccatctcttcttcttc 60 |||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||| Sbjct 7 CGACGGCGATTTCGTAGCGAAATCTCCGTCTCCTTCCTTTAACCCCATCTCTTCTTCTTC 66 Query 61 ttcgtcttttgctttctCATTCGGATTAACTTCATCTCTTTGATGGGATTTTGCGTGTTT 120 | ||||||||||||||||||| |||||||||||||||||||||||||| || ||||| Sbjct 67 -T--TCTTTTGCTTTCTCATTCGAATTAACTTCATCTCTTTGATGGGATTCAGCTTGTTT 123 Query 121 TCTCAGATGCTAGTTATTTTCTTCATTTGTTATGCAGCAAGTA-TAAAAAGTTGAAGACT 179 ||||| ||| ||||| ||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 124 TCTCAAATGTTAGTT-TTTTCTTCATTTGTTATGCAGCAAGTATTAAAAAGGTGAAGACT 182 Query 180 TTATCATCCTCTCAGCGGCTTGAAGGCCAACTCCAAACTTATGGCGGATCTTATCAAGAG 239 |||||||||||||||||||||| | || |||| |||||| |||| ||||||| ||||||| Sbjct 183 TTATCATCCTCTCAGCGGCTTGGATGCTAACTGCAAACTAATGGGGGATCTTGTCAAGAG 242 Query 240 TCAGTTTTGTTTGTTGATGTTCATCAAAGCAATCATGAACAGACATAGCCTTGTGTCAAC 299 |||||||| |||||||||| |||||||||||||||||||||||| || ||| | ||| | Sbjct 243 ACAGTTTTGATTGTTGATGTACATCAAAGCAATCATGAACAGACACAGGCTTCTCTCAGC 302 Query 300 GGCAACAGATGAATGCAACAAAGGAGTTGGTCAAACTTGCTCGACTTCTCCATCTCCAGT 359 |||||||||||||||||| ||| | |||||||| ||||||| ||||| ||||||||| Sbjct 303 GGCAACAGATGAATGCAATAAAAAACTTGGTCAAGCTTGCTCTTCTTCTTTATCTCCAGT 362 Query 360 CCATAACTTTCTCAATGTCCAGCCAGAACACCGGAAATCTCCCTTCATAAGATCACAATC 419 |||||||||||| |||||||||||||||||||||||| |||| |||||||| |||||||| Sbjct 363 CCATAACTTTCTGAATGTCCAGCCAGAACACCGGAAAACTCCTTTCATAAGGTCACAATC 422 Query 420 TCCAGATTCAACTGGTCAGCTATGGCCAAAGAATATTTCTCAGAGCACTTTCTCTCGCTC 479 |||||||||| |||||||||||||||||||||||| |||||||||||| |||||||| || Sbjct 423 TCCAGATTCACCTGGTCAGCTATGGCCAAAGAATAGTTCTCAGAGCACCTTCTCTCGGTC 482 Query 480 TTCCACCTTCTGCACAAACCTCTACTTGTCATCATCTTCAACCTCTGAGACTCAAAAACA 539 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 483 TTCCACCTTTTGCACAAACCTCTACTTGTCATCATCTTCAACCTCTGAGACTCAGAAACA 542 Query 540 TCTAGGAAACAGTCTTCCTTTCCTCCCTGATCCCTCCTCTTACACCCACTCAGCTTCTGG 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 543 TCTAGGAAACAGTCTTCCTTTCCTCCCTGATCCCTCCTCTTACACCCACTCAGCTTCTGG 602 Query 600 TGTGGAGTCTGCAAGATCTCCATCTATTTTCAGTGAAGATTTGGGCAATCAATGTGATGG 659 |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| Sbjct 603 TGTGGAGTCTGCAAGATCTCCATCTATTTTCACTGAGGATTTGGGCAATCAATGTGATGG 662 Query 660 AGACAACTCCGGCTCGCTTCTCAAAGATTTCCTTAATCTTTCTGGAGATGCTTGTTCCGA 719 || ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 663 AGGCAACTCCGGGTCGCTTCTCAAAGACTTCCTTAATCTTTCTGGAGATGCTTGTTCCGA 722 Query 720 TGGCGGTTTTCATGATTTTGGCTGTTCGAATGACAGCTTTTGCTTATCAGATCAAATGGA 779 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 723 TGGCGATTTTCATGATTTTGGCTGTTCGAATGACAGCTATTGCTTATCAGATCAAATGGA 782 Query 780 GTTGCAGTTCCTCTCTGATGAACTTGAGCTGGCTATCACAGACCGCGCTGAAACCCCCAG 839 || |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 783 ATTACAGTTCCTGTCTGATGAACTTGAGCTGGCTATCACAGACCGCGCTGAAACTCCCAG 842 Query 840 GCTTGATGAGATCTATGAAACGCCATTGGCTTCGTCAAATCCAGTGACGAGATTGAGTCC 899 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 843 GCTTGATGAGATCTATGAAACGCCATTGG---CGTCAAATCCAGTGACGAGATTGAGTCC 899 Query 900 AAGCCAAACCTGTGTTGCTGGAGCAATGTCTATAGACGTAGTTTCATCGCACCCTTCTCC 959 |||||||| ||||||| |||||||||||||| |||||||||||||||| ||||||||||| Sbjct 900 AAGCCAAAGCTGTGTTCCTGGAGCAATGTCTGTAGACGTAGTTTCATCTCACCCTTCTCC 959 Query 960 GGGATCAGCAGCCAATCACAAGACGAGAATGAGATGGACTCCTGAGCTCCACGAGTCTTT 1019 |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 960 GGGATCAGCAGCCAATCAAAAGTCGAGAATGAGATGGACTCCTGAGCTCCACGAGTCTTT 1019 Query 1020 TGTTAAGTCGGTGATCAAACTTGAAGGGCCTGAAAAGGCCACTCCAAAGGCTGTTATGAA 1079 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1020 TGTAAAGGCGGTGATCAAACTTGAAGGGCCTGAAAAGGCCACTCCAAAGGCTGTTAAGAA 1079 Query 1080 GCTCATGAATGTTGAGGGCTTGACGATCTATCATGTAAAAAGCCACTTGCAGAAGTATAG 1139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 GCTCATGAATGTTGAGGGCTTGACGATCTATCATGTAAAAAGCCACTTGCAGAAGTATAG 1139 Query 1140 ACTAGCCAAGTATATGCCagagaaaaaagaagagaaaaagaatgaaaactcagaagaaaa 1199 |||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||| Sbjct 1140 ACTAGCCAAGTATATGCCAGAGAAAAAAGAAGAGAAAAGGACTGATAACTCAGAAGAAAA 1199 Query 1200 gaaaCTGGCTTTGAGTAACAGTGATGCTGACGAGAAGAAGAAAGGGGCCATACAATTAAC 1259 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1200 GAAACTGGCTTTGAGTAAGAGTGAAGCTGACGAGAAGAAGAAAGGGGCCATACAATTAAC 1259 Query 1260 TGAAGCTCTGCGTATGCAGATGGAAGTTCAGAAGCAACTGCATGAACAGCTCGAGGTGCA 1319 |||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 1260 TGAAGCACTGCGTATGCAGATGGAAGTTCAGAAGCAATTGCATGAACAGCTGGAGGTGCA 1319 Query 1320 ACGGGTACTTCAGCTACGAATTGAAGAGCACGCTAAATACTTGGAAAAGATGTTGGAAGA 1379 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1320 ACGGGTGCTTCAGCTACGAATTGAAGAGCATGCTAAATACTTGGAAAAGATGTTGGAAGA 1379 Query 1380 ACAACGCAAAACCGGAAAGTTGATTTGTTCTTCTTCTTCTCAGACAGTATTATCACCTAG 1439 |||||||||||| |||| || ||||| |||||||||| |||||||| ||||||||||| Sbjct 1380 ACAACGCAAAACAGGAAGGTGGATTT---CTTCTTCTTCGCAGACAGTGTTATCACCTAG 1436 Query 1440 TGATGACTCTATATCAGATTCTCAAAACATGTCCAAAACCGAAGCATCTTCGCCTCAGCG 1499 ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1437 TGATGACTCTATACCAGATTCTCAAAACATGTCCAAAACCAAAGCATCTTCGCCTCAGCC 1496 Query 1500 GTCAACATCTGCAAAGAACAAAGCTTCTGAAACTGAAGACGATAAATGTGAAAGCCCTCA 1559 | || | ||||| |||||||||| || ||||| |||||||||||||||||||||||||| Sbjct 1497 GCCATTACCTGCAGAGAACAAAGCGTCGGAAACCGAAGACGATAAATGTGAAAGCCCTCA 1556 Query 1560 AAAACGTCGCAGGCTTGAGAACAAAGCTGAATCTGAAGATCCTAAGAGGTAGGAAGATGC 1619 |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| | Sbjct 1557 GAAACGTCGCAGGCTTGAGAACATAGCTGAATCTGAAGATCCTAAGAGGTAGTAAGATTC 1616 Query 1620 TTCAAGTATGTAAATATGGTATGTTTTGTGTGATATGGTGAGAGAGATGGTGGTGATCAT 1679 |||||||||||||||||||| ||||||||| || | |||||||||| | | || ||| Sbjct 1617 TTCAAGTATGTAAATATGGTCCGTTTTGTGTAATTTAGTGAGAGAGA-GA-G-TG-TCAC 1672 Query 1680 TCAAAGTATATGTTTGTAATGTAGATCTTTGTCGGAAACGTGTAAACGTATTACGAATCT 1739 ||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||| || | Sbjct 1673 TCAAAATATATGTTTGTAATGTAGATCTTTGTCAGAAACGTGTAAACTTATTACGGATAT 1732 Query 1740 TGAGGATGTTC-CTTTCATAAACATATGATGCATAGAACCCGAAATCCC-TGATTT-TGT 1796 ||||||||| | || | | | | | ||| | | |||| | ||| | || ||| ||| Sbjct 1733 TGAGGATGT-CACTGCCTTCA-C-TGTGA-GAAAAGAATCTTTAATTCTGTG-TTTGTGT 1787 Query 1797 GAGTAGA--TCACTTGTTAGTGTGAAAAGTGAAG-GATTCACTTTCCAATCTTCATAGG- 1852 | ||| | ||||| ||||||| ||||| ||||| | ||||||||||||| || ||| Sbjct 1788 GTGTATAGGTCACTGGTTAGTGAGAAAACTGAAGAG-TTCACTTTCCAATGTTTATATAC 1846 Query 1853 --GTTTGCTAATATCAAAAGTGGATGTCACTTTCC 1885 |||||||||||||||| ||||| |||||||||| Sbjct 1847 AAGTTTGCTAATATCAAACGTGGAAGTCACTTTCC 1881 > AT1G55964.1 | Symbols: | pseudogene of myb family transcription factor | chr1:20931032-20931975 FORWARD LENGTH=535 Length=535 Score = 195 bits (105), Expect = 2e-48 Identities = 196/238 (82%), Gaps = 13/238 (5%) Strand=Plus/Plus Query 952 CCTTCTCCGGGATCAGCAG-CCAATCACAAGACGAGAATGAGATGGACTCCTGAGCTCCA 1010 ||||||| |||||||| | || |||||| | ||||| |||| || |||||||||||| Sbjct 157 CCTTCTCTAGGATCAGC-GATTAACCACAAGCCAAGAATAAGATAGAGTCCTGAGCTCCA 215 Query 1011 CGAGTC-TTTTGTTA-AGTCGGTGATCAAACTTGAAGGGCCT----GA--AAAGGCCACT 1062 ||| | |||| || || | |||| ||| ||| |||||||| || |||| | ||| Sbjct 216 TGAG-CATTTT-CTAGAGGCAGTGAACAAGCTTCAAGGGCCTAAAAGACTAAAGACAACT 273 Query 1063 CCAAAGGCTGTTATGAAGCTCATGAATGTTGAGGGCTTGACGATCTATCATGTAAAAAGC 1122 || ||||||| ||||||||| |||||||||||| | ||||| |||||||| || |||||| Sbjct 274 CCTAAGGCTGCTATGAAGCTAATGAATGTTGAGAGTTTGACCATCTATCAAGTGAAAAGC 333 Query 1123 CACTTGCAGAAGTATAGACTAGCCAAGTATATGCCagagaaaaaagaagagaa-aaag 1179 |||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||| Sbjct 334 CACTTGCAGAAGTATAGACTAGCCAAGTATATGCCAGAGAGAAAACAAGAGAAGAAAG 391 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 93322813155 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5