BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478688 Length=946 Score E Sequences producing significant alignments: (Bits) Value AT3G13120.1 | Symbols: | Ribosomal protein S10p/S20e family pr... 1387 0.0 > AT3G13120.1 | Symbols: | Ribosomal protein S10p/S20e family protein | chr3:4219775-4221630 REVERSE LENGTH=1027 Length=1027 Score = 1387 bits (751), Expect = 0.0 Identities = 887/950 (93%), Gaps = 19/950 (2%) Strand=Plus/Plus Query 1 ATGGATAACCCTCGAGACGAAACAGCTGAAGAAGAAACCTCATCCTTCGAACGTTaagag 60 ||||||||||||| ||| ||| | ||||||||||||||||||||||||||||||| | | Sbjct 1 ATGGATAACCCTCAAGAAGAAGCTGCTGAAGAAGAAACCTCATCCTTCGAACGTT-A-A- 57 Query 61 gaagaagaagaagaagaagagaaATCGATTC-TTG-TTCAGGAAAATTCCATGGCGGTGT 118 | || ||||||||| ||||||||||||||| | | || ||||||||| |||||||| | Sbjct 58 G-AG--GAAGAAGAATAAGAGAAATCGATTCGTGGTTTTGGGAAAATTCAATGGCGGTTT 114 Query 119 CTACTGTATCTTCGTTTCTATTACCCTCCTTCGTCATTCCAAGCTCTTCGCCTTCTTCTA 178 |||||||||| ||||||||||| || || |||| |||||||||||||||||||||||||| Sbjct 115 CTACTGTATCGTCGTTTCTATTGCCATCTTTCGGCATTCCAAGCTCTTCGCCTTCTTCTA 174 Query 179 CCAGACTCAAAGTCTCTCTGCTACCTTCATCGTCTACCCATGGCGGCCTTAGTTCCTGCG 238 |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 175 CCAGACTCAAAGTCTCTCTGCTGCCTTCATCTTCTACCCATGGCGGCCTTAGTTCCTGCG 234 Query 239 TCCTTACTAAACCCTCCGTTTCTCTTACGAAGGTCTTCGCGGTTCCCGAAACCCTAGATC 298 ||||||| ||||| ||||| || ||||||||||||||||| |||||||| |||||||||| Sbjct 235 TCCTTACGAAACCATCCGTCTCGCTTACGAAGGTCTTCGCTGTTCCCGATACCCTAGATC 294 Query 299 CAACTCCAGAAATTCTCGATGAACCCGCCTCTGAGGTTCCGAGCTCTTCCTCCATCAGTG 358 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 295 CAACTCCAGAAATTCTCGATGAACCCGCCTCTGAGGTTCCGAGCTCTTCATCCATCAGTG 354 Query 359 TAGATGCTGATAAGATGGCGCCAAAGCAAAAGATTAGGATCAAGCTTAGATCATACTGGG 418 |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 355 TAGACGCGGATAAGATGGCGCCAAAGCAAAAGATTAGGATCAAGCTTAGATCATACTGGG 414 Query 419 TGCCTCTTATTGAGGACTCATGCAAGCAGATTCTTGATGCTGCTAGAAATACTAATGCAA 478 ||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||||| Sbjct 415 TGCCTCTTATTGAGGACTCATGCAAGCAGATACTTGATGCTGCGAGAAACACCAATGCAA 474 Query 479 AGACGATGGGTCCTGTTCCATTGCCAACCAAGAAGCGTATCTACTGTGTTCTTAAGTCTC 538 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 475 AGACGATGGGTCCTGTTCCATTGCCAACCAAGAAGCGTATCTACTGTGTTCTCAAGTCTC 534 Query 539 CTCACGTACACAAGGATGCTAGGTTCCATTTTGAAATCCGGACACACCAGCGTATGATTG 598 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 535 CTCACGTTCACAAGGATGCTAGGTTCCATTTTGAAATCCGGACACACCAGCGCATGATTG 594 Query 599 ATATTCTCTACCCGACTGCTCAAACTATCGATTCTTTGATGCAACTTGATCTTCCTGCTG 658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 595 ATATTCTCTACCCGACTGCTCAAACTATCGATTCTTTGATGCAACTTGATCTTCCTGCTG 654 Query 659 GTGTAGATGTGGAAGTGAAGCTCTGAAGAACGA-GCGTAACTACAATGATGTGATGGGCA 717 |||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 655 GTGTCGATGTGGAAGTGAAGCTCTGAAGAA-GAAGCGTAACTACAATGATGTGATGGGCA 713 Query 718 CTTTTGCATTAAATGAACAGACTGTTTCAGATCAACTACATTTCTTAGAACCGGTAAGCC 777 |||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 714 CTTTTGCATTGAATGAACAGACTGTTTCAGATCAACTACATTGCTTAGAACTGGTAAGCC 773 Query 778 TTGTATCATCTTTTT-GAGAACCTCTGTAATGAAAATGTAAGTTGTATGATCTGGTCCTT 836 ||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||| Sbjct 774 TTGTATCATCTTTTTTGAGAACCTTTGTAACGAAAATGTAAGTTGTATTATCTGGTCCTT 833 Query 837 AGCAAAGTTGGAATCTTTAGCGATGTTTGGTTCTTAGTTGATGAACATATCCTTAATTAA 896 | || | | |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 834 GG-AATCT---A-TCTTTAGCGATGCTTGGTTCTTAGTTGATGAACATATCCTTAATTAA 888 Query 897 GCAAGTTCAAAGGAAttttttgtttttgttttACTAATTGTTATGCAGTT 946 |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 889 GCAAGTTCAAAGGAATTT---GTTTTTGTTTTACTAATTGTTATGCAGTT 935 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46265649387 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5