BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478706 Length=3285 Score E Sequences producing significant alignments: (Bits) Value AT3G13225.2 | Symbols: | WW domain-containing protein | chr3:4... 3969 0.0 > AT3G13225.2 | Symbols: | WW domain-containing protein | chr3:4258770-4262911 REVERSE LENGTH=2895 Length=2895 Score = 3969 bits (2149), Expect = 0.0 Identities = 2478/2637 (94%), Gaps = 21/2637 (1%) Strand=Plus/Plus Query 640 TTCTATTTTCAGGTCAGAAAACAGGAAACCCTTTGCTTTTACTTGGCCAGTATAGTGATG 699 |||| | ||||||||||||||||| ||| ||||||||||||||||| ||||||||||||| Sbjct 220 TTCT-TCTTCAGGTCAGAAAACAGAAAATCCTTTGCTTTTACTTGGGCAGTATAGTGATG 278 Query 700 ATGAGGTGGAAGAAGATTCGGATAAGAAAGCAGATGATGCCTCTGCAGATAGTTCCTTAA 759 |||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||| Sbjct 279 ATGAGGTGGAAGAAGATTCGGATAAGAAGGCAGATGATACCTCTGCAGATAGTTTCTTAG 338 Query 760 CCAATAAAAATGAGCAGGTCGATGGATTAATTCAAGAAGGACACAAAGATACAAATATCA 819 ||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||| Sbjct 339 CCAATAAAAATGAGCAGGTTGATGGATTAATTCAAGGAGGACACAAAGATACGAATATCA 398 Query 820 AATCAGGTGCAGTTACCA-CA--ATGCAGATGGCTGACCAACAGCAGGCAGGGGAGAATT 876 ||||||||||||| |||| || |||||||||||||| ||||||||| |||||||||||| Sbjct 399 AATCAGGTGCAGTCACCACCACTATGCAGATGGCTGATCAACAGCAGACAGGGGAGAATT 458 Query 877 CTTCTGCACTTGATTATAGAGCTGAAGGAGAAAGTGGTTTTGTCACAGTGAGTAACTCAA 936 ||||||| ||||||| ||||||||||| ||||| ||||| | ||||||||||||||||| Sbjct 459 CTTCTGCTCTTGATTCTAGAGCTGAAGTAGAAACTGGTTATACCACAGTGAGTAACTCAA 518 Query 937 CAATC-TTGGATGGACTAAATAAGCAGACAGATCCCTCAGTTCAAGCATCTGGCAGCGTG 995 ||| | |||||||||||||| |||||||||| |||||||||||||||||||||||| ||| Sbjct 519 CAA-CATTGGATGGACTAAACAAGCAGACAGTTCCCTCAGTTCAAGCATCTGGCAGTGTG 577 Query 996 TCTTTGGAGCACCAGGCTCCCACAGATGTTACTTCGCAGTGGAAGATGATTTTGCATGAG 1055 |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct 578 TCTTTGGAGCACCAGGCTCCCACAGATGTTACGTCGCAGTGGAAGATGATTCTGCATGAG 637 Query 1056 GAGAGCAATCAGTATTACTACTGGAATACAGAAACTGGGGAAACTTCGTGGGAAATT-CC 1114 ||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| || Sbjct 638 GAGAGCAATCAGTATTATTACTGGAATACAGAAACTGGAGAAACTTCGTGGG-AATTGCC 696 Query 1115 TACAGTTTTGACTCAAACTGCCTGTGCATATGGGACTGGGTACAATGAGTCTGGGCCCAT 1174 ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 697 TACAGTTTTGACTCAAACTACCTTTGCATATGGGACTGGGTACAATGAGTCTGGGCCCAT 756 Query 1175 GGTTACAGATGAGTCCACATTGATTTCTGGTGTTGAACCAAGCTATTTCCTACCCGTGCA 1234 ||||||||||| ||||| |||||||| |||||||||||||||||||| |||||||||| Sbjct 757 GGTTACAGATGCTTCCACCTTGATTTCAAGTGTTGAACCAAGCTATTTCGTACCCGTGCA 816 Query 1235 AAATAGTTTCACAGGAACTGACTATTCGACTTTTCCAACTGTTGAGCTGGATGAGAGAAA 1294 ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 817 AAATAGTTTCACAGGAACTGACTATTCTACTTTTCCAACTGTTGAGCTGGATGGGAGAAA 876 Query 1295 CAAAAATGAAGATCTATATGTCAAAAGTTTAGGAACAGATGGTCATCAAGTTGAATGTCG 1354 ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 877 CAAAAGTGAAGATCTATATGTCAAAAGTTTAGGAACTGATGGTCATCAAGTTGAATGTCG 936 Query 1355 GATAGACTCTGTTGTTAGTTGTCAGGAGGACCTTTCAAGGCCAGGAAATTCAGATCATGT 1414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 937 GATAGACTCTGTTGTTAGTTGTCAGGAGGACCTTTCAAGGCCAGGAAATTCAGATCATGT 996 Query 1415 GCATACTAATTTTGATGCAGGAGCGGCTACTGACCTCCCATCTCGCTTGTTGAGTCAAAT 1474 ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 997 GCATACTTATTTTGATGCAGGAGCTGCTACTGACCTCCCATCTCGCTTGTTGAGTCAAAT 1056 Query 1475 CGAAGGCTTACTGGAGAAGCTGAGGTCTCTGAAGAGGTCGCATGGGAACTTTCACAGCAA 1534 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1057 CGAAAGCTTACTGGAGAAGCTGAGGTCTCTGAAGAGGTCGCATGGGAACTTTCACAGCAA 1116 Query 1535 TGAGCAGATAACAAAGTACATTCTGGAGGTTGAAGTCAGACATTCTGATGTAAAGGCGCT 1594 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1117 TGAGCAGATAACAAAGTACATTCTGGAGGTTGAAGTCAGACATTCTGATGTAAAGGCGCT 1176 Query 1595 CATATTGGATACCTCACCTTTACTTTCTTTTTGGCTTCACACTGAGAAACAACTTAAGCG 1654 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1177 CATATTGGACACCTCACCTTTACTTTCTTTTTGGCTTCACACTGAGAAACAACTTAAGCG 1236 Query 1655 TCTGGAAGATAGTGTTAACGATGAGATTTACCAGCTTGCAAAATCTGCAGTAATGGATGA 1714 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1237 GCTGGAAGATAGTGTTAACGATGAGATTTACCAGCTTGCAAAATCTGCAGTAATGGATGA 1296 Query 1715 AATTGCAGAAACTAACAAAAGCCCTCCCGAAGAAAAGTTGGTAGCAGATGCTAATACAGA 1774 | ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 1297 AC---CAGAAACTAACAAAAGCCCTCCCAAAGAAAAGTTGGTGGCAGATGCTAATACAGA 1353 Query 1775 GAGTGAATCCGAGGGCAGTGAGAGAGATGGAGAGCTAGCTCTATCTGGAAAATCTCTTCA 1834 |||||| ||||||| ||||||||||||||||||| |||||| |||||||||||||||||| Sbjct 1354 GAGTGAGTCCGAGGACAGTGAGAGAGATGGAGAGTTAGCTCAATCTGGAAAATCTCTTCA 1413 Query 1835 TTCAGATGGATCAGCTGATGTGATCGGCGATGGATCTCCTAAACACTCCCCAAGTCATCC 1894 |||||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||| Sbjct 1414 TTCAGATGAATCAGCTGATGGGAGCGGCGATGGATCTCCTAAACACTCCCCAAATCATCC 1473 Query 1895 AGCTGGGCAGTCTGATATTACTCCTTCAACTGAGATGCTTCAGAAGGCTGGCTCCCCAGA 1954 |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 1474 AGCTGGGCAGTCTGATATTATTCCTTCAACTGAGATGCTTCAGAAGGCCGGCTCCCCAGA 1533 Query 1955 TGTGGAAGATATTGACATGGATGTGGATATGGAGGTTGAAGAATCAGTTCCAGTGTCTTC 2014 |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1534 TGTGGAAGATGTTGACATGGATGTGGATATGGAAGTTGAAGAATCAGTTCCAGTGTCTTC 1593 Query 2015 TGTTCAAGTGATAGATACTTCTGATGGTAAGATATTCAGCCAAACAGAGCCATCCAACCT 2074 ||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||| Sbjct 1594 TGTTCAAGTGATAGACGCTTCTGATGGTAAGATGTTCAGTCAAACAGAGCCATCCAACCT 1653 Query 2075 CCATGCAGATGTTCCACTACCTCCGGGTGAGGAATGGATTCCACCACCGCCGTCTGACAG 2134 ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| || Sbjct 1654 TCATACAGATGTTCCACCACCTCCGGGTGAGGAATGGATTCCACCACCGCCGTCTGAGAG 1713 Query 2135 TGAAGATGTTCCTCCGCCGCCACTAGACAGTTATAGCGAACCAATTCCCCCACCACCTGA 2194 ||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 1714 TGAAGATGTTCCTCCACCGCCACCAGACAGTTATAGCGAACCAATTCCTCCACCACCTGA 1773 Query 2195 AAATGGCCATTTCCCTTCATCTTTGTCCAGTGATTCTCTTGGAGTTCCCTATACTGTACC 2254 ||||||||| || ||||||||||||||||||| ||||| |||||||||||||| ||||| Sbjct 1774 CAATGGCCATGTCGCTTCATCTTTGTCCAGTGACTCTCTCGGAGTTCCCTATACCGTACC 1833 Query 2255 TCAATCTTATATGCAGCAATCTGCTGATTATGCGACACAATACAACTTATCCTATCCAGA 2314 |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1834 TCAATCATATATGCATCAATCTGCTGATTATGCGACACAATACAACTTATCCTATCCAGA 1893 Query 2315 GTCCAATTATCAATATACCAATTCTGTTGCTCTAGATCCTAATACTCAGTTCTATGGCCA 2374 |||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| Sbjct 1894 GTCCAATTATCAATATACCAATGCTGTTACTCTAGCTCCTAATACTCAGTTCTATGGCCA 1953 Query 2375 TGTCGATGAATCTCAAGTTTCTCTTCCCCAGTCGACATTTTATTATGAAACTGTTCCTGG 2434 ||| |||| ||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 1954 TGTGGATGGATCTCAAGTTTCTCTTCCCCAATCCACATTTTATTATGAAACTGTTCCTGG 2013 Query 2435 TACAAGTGAAGTTGCTCCCACAGCAGCCAGTGCTGGTGAAGCTTATTATGATTTCAATGG 2494 ||||| |||||||| ||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 2014 TACAACTGAAGTTGTTCCTGCAGCAGCCAGTGCTGGTGAAGCTTATTACGATTTCAATGG 2073 Query 2495 TGCAGCTCCACTTTTTCCTATCATTAGCTCCACG-GAGTCATCGCTACATCACAGTGGAG 2553 |||||||||||| |||||| |||||||||| | |||||||| |||||||||||||||| Sbjct 2074 TGCAGCTCCACTGTTTCCTGTCATTAGCTCGG-GTGAGTCATCTCTACATCACAGTGGAG 2132 Query 2554 TTGGTTCTGCTAATCACTACATCTCAAGCAATTCTTCTACAGTTGTAGTGCCTAGTTCGA 2613 ||||||||||||||||| ||||| ||| ||| |||||||||| || |||||||||||||| Sbjct 2133 TTGGTTCTGCTAATCACCACATCCCAAACAACTCTTCTACAGCTGCAGTGCCTAGTTCGA 2192 Query 2614 GAACCAATGACTTTGCTGAGATTGCATCTTCGGCAACTACTTCTCAATCCACAGATGTTA 2673 || ||||||||| | ||||| ||| |||||| |||||| ||||| ||||||||||||||| Sbjct 2193 GATCCAATGACTCTACTGAGGTTGGATCTTCAGCAACTGCTTCTAAATCCACAGATGTTA 2252 Query 2674 CAGGTGAATCGTCTCTATTAGCAAAGGGTCAAACGAAAGTGAAACGG-CTAAAAAAGCGG 2732 || ||| |||||||||||||||||| |||||||| |||||||||||| | ||||||| Sbjct 2253 CAAGTGGATCGTCTCTATTAGCAAAAGGTCAAACTAAAGTGAAACGGAC-AAAAAAGAAA 2311 Query 2733 ACAGTAGCTGCTACATCCACATTGAGGTCAAATAAAAAGGTTTCGAGTTTGGTTGACAAG 2792 ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 2312 ACAGTAGCTGCTACATCTACATTGAGGTCAAATAAAAAGGTTTCCAGTTTGGTTGACAAG 2371 Query 2793 TGGAAAGCTGCGAAAGAGGAGCTAAACGATAGTgaagaagaagaagatgattccggaatc 2852 |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct 2372 TGGAAAGCTGCGAAAGAGGAGCTAAACGATAGCGAAGAAGAAGAAGATGATTCCGAAATC 2431 Query 2853 ctagatagaaaaagaaaacgagaaattgaagaatggaaaTCTCGACAAATCGCAAGTGGA 2912 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2432 CTAGATAGAAAAAGAAAACGAGAAATCGAAGAATGGAAATCTCGACAAATCGCAAGTGGA 2491 Query 2913 GAGGCTAAAGACAACGCAAATTTCCAACCTCTCGGTGGTGACTGGCGTGAGAAAGTGAAG 2972 ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 2492 GAGGCTAAAGACAACGCAAATTTCCAACCCCTGGGTGGTGACTGGCGTGAGAAAGTGAAA 2551 Query 2973 CGGAAGAGAGAACGAGCCGAGAAGTCTCAGAAGAAAGACCCCGAAAAGCAGCAAAAGCCT 3032 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 2552 CGGAAGAGAGAACGAGCTGAGAAGTCTCAGAAGAAAGACCCCGAAAAGCAGCAAAAACCT 2611 Query 3033 GATCTAACCAAACTCTCAGCAAATCTCCCATCGGGATGGCAGGCATATTGGGACGAATCT 3092 |||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||| Sbjct 2612 GATCTAACAAAACTCTCAGCAAATCTCCCGTCGGAATGGCAGGCATATTGGGACGAATCT 2671 Query 3093 ACCAAAAAAGTTTACTATGGGAATACAAGTACATCTCAAACTAGTTGGACACGACCCACT 3152 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 2672 ACCAAAAAAGTTTACTATGGGAATACGAGTACATCTCAAACCAGTTGGACACGACCCACT 2731 Query 3153 ACCTGAACCTCAATTACTTTCTCGAC-C-CAtttttttACTATTTCTTCTGTGATACATT 3210 ||||||||||||||| |||||||| | | |||||||| || ||||||||||||||||||| Sbjct 2732 ACCTGAACCTCAATTGCTTTCTCGTCTCACATTTTTT-ACAATTTCTTCTGTGATACATT 2790 Query 3211 TGTTTTAGATTTCTTTCTTCTCTTATCTTTATGTAAATTTATTACAGAGCTAGTGTT 3267 ||||||||||| || || ||||| ||||||||||||||||||||||||||||||| Sbjct 2791 TGTTTTAGATT-CT--CTAATCTTACCTTTATGTAAATTTATTACAGAGCTAGTGTT 2844 Score = 350 bits (189), Expect = 6e-95 Identities = 203/209 (97%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 1 GGTTAGAGTCTGAAGAGAGATTGTAAGAAATCTGATGGGGAAGAGAAAAGAGCGTCGTTT 60 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 27 GGTTAGAGTCTGAAGAGAGA--GTAAGAAATCTGATGGGGAAGAGAAAAGAGCGTCGTTA 84 Query 61 CGCCGCCATGAATAGCACCGGCCGTCGTGTCAAGCTTGATCTCTTTGCGGAACCCTCCT- 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 85 CGCCGCCATGAATAGCACCGGCCGTCGTGTCAAGCTTGATCTCTTTGCGGAACCCT-CTG 143 Query 120 GAGATTTGGGTGGCTCAGATGTGCGTGATGGAGTTGAGCGGGAACAAACAGAGCTTAATG 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 144 GAGATTTGGGTGGCTCAGATGTGCGTGATGGAGTTGAGCGGGAACAAACAGAGCTTAATG 203 Query 180 AGTTACCCAATTCACCTTCTTCTTCAGGT 208 || |||||||||||||||||||||||||| Sbjct 204 AGCTACCCAATTCACCTTCTTCTTCAGGT 232 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 163443900294 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5