BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478735 Length=2059 Score E Sequences producing significant alignments: (Bits) Value AT3G13490.1 | Symbols: OVA5, ATKRS-2 | Lysyl-tRNA synthetase, c... 3205 0.0 > AT3G13490.1 | Symbols: OVA5, ATKRS-2 | Lysyl-tRNA synthetase, class II | chr3:4395725-4399325 REVERSE LENGTH=2091 Length=2091 Score = 3205 bits (1735), Expect = 0.0 Identities = 1957/2062 (95%), Gaps = 24/2062 (1%) Strand=Plus/Plus Query 1 AGAGATGGAGGCACTTAAGGTATGGAGTCTAACGGCGACGCCACTGAAGCAACTACTCCG 60 |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 20 AGAGATGGAGGCACTTAAGGTATGGAGTCTAACGGCGACGCCACTGAAACAATTACTCCG 79 Query 61 TCTAACTTCTTCTTCTACACGTCTCGCCACCACAATATATGGAAGAAGATCCTACCACTT 120 |||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 80 TCTATCCTCTTCTTCTACACGTCTCGCCACCACAATATATGGACGAAGATCCTACCACTT 139 Query 121 ATCACCGGCGCTTCGATGTGCCTCCGCAGcttcttcttcttcttcttcCAATGCCACGAC 180 |||||| ||||| |||||||||||||||| |||||||||||||||||| ||||||||| Sbjct 140 ATCACCTGCGCTACGATGTGCCTCCGCAG---CTTCTTCTTCTTCTTCCAGTGCCACGAC 196 Query 181 GGCTGAAACTTCCAAACCATCCGGCCGCAACCGCCGGTCCGCGTCATCTTCCAATTCCAC 240 |||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||| Sbjct 197 GGCTGAAACTTCTAAACCCTCCGGCCGCAATCGCCGGTCTGCGTCATCTTCCAATTCCAC 256 Query 241 CTCTGATCGTGAAGCTATCCGCTCCATTCGCCTTAAAAAGGTTGAAGAATTGAGAGGTCA 300 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 257 CTCTGATCGTGAAGCTATCCGCTCCATTCGCCTTAAAAAGGTTGAAGAATTGAGAGGCCA 316 Query 301 AGGTCTTGAACCTTATGCTTATAAGTGGGAAAAAACTCACAGTGCAAATCAGCTTCAAGA 360 |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 317 AGGTCTTGAACCTTATGCTTATAAGTGGGAAAAATCCCACAGTGCAAATCAGCTTCAAGA 376 Query 361 GATTTATAGGCATCTAGCTAATGGTGAAGAATCAGACAATGAGAGTGATCGTGTTTCTAT 420 ||| |||| |||| ||||||| |||||||||||||||||||||| |||| |||||||||| Sbjct 377 GATATATAAGCATTTAGCTAACGGTGAAGAATCAGACAATGAGATTGATTGTGTTTCTAT 436 Query 421 AGCTGGTAGAGTCGTTGCTCGTAGAGCCTTTGGGAAACTTGCATTCTTGACTCTCAGGGA 480 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 437 AGCTGGTAGAGTCGTTGCTCGTAGAGCCTTTGGAAAACTTGCATTCTTGACTCTCAGGGA 496 Query 481 TGACTCTGGAACTATTCAGCTTTACTGTGAGAAGGAGAGGCTTTCAGATGATCAGTTTGA 540 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 497 TGACTCTGGAACTATTCAGCTTTACTGTGAGAAGGAAAGACTTTCAGATGATCAGTTTGA 556 Query 541 ACAGTTGAAGCAATTCATCGACATTGGTGATATTTTGGGTGCTCGTGGCTCAATGAAGAG 600 ||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 557 ACAGTTGAAGCAATTTATCGACATTGGTGATATTTTGGGTGCTAGTGGCTCGATGAAGAG 616 Query 601 GACTGAGAAAGGGGAGCTTTCTATATGTGTGAATTCTTTTTCAATTCTCACAAAGTCTCT 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 617 GACTGAGAAAGGGGAGCTTTCTATATGTGTGAATTCTTTTTCAATTCTCACAAAGTCTCT 676 Query 661 CCTTCCACTGCCAGACAAATATCATGGTCTAACTGATATTGATAAACGTTACCGCCAACG 720 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 677 CCTTCCACTTCCAGACAAATATCATGGTCTAACTGATATTGATAAACGTTACCGCCAACG 736 Query 721 GTATGTTGATATGATTGCTAATCCTGAAGTGGCTGATGTGTTCCGGAGAAGAGCAAAGAT 780 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 737 GTATGTTGATATGATTGCTAATCCTGAAGTGGCTGATGTGTTCCGGAGAAGGGCAAAAAT 796 Query 781 CGTTTCAGAGATACGCAAGACAGTTGAGTCTTTTGGATATTTGGAGGTTGAAACTCCAGT 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 797 CGTTTCAGAGATACGCAAGACAGTTGAGTCTTTTGGATATTTGGAGGTTGAAACTCCAGT 856 Query 841 TCTTCAGGGAGCAGCTGGTGGAGCCGAAGCAAGACCTTTTGTAACGTTTCATAATTCACT 900 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 857 TCTTCAGGGAGCAGCTGGTGGAGCTGAAGCAAGACCTTTTGTAACGTTTCATAACTCACT 916 Query 901 TGGGAGGGATCTCTACCTGAGGATTGCAACTGAGCTTCACTTGAAGAGAATGCTGGTTGG 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 917 TGGGAGGGATCTCTACCTGAGGATTGCAACTGAGCTTCACTTGAAGAGAATGCTAGTTGG 976 Query 961 TGGGTTTGAGAAAGTGTATGAAATTGGTCGTATATTTAGAAATGAAGGCCTTTCAACACG 1020 |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct 977 TGGGTTTGAGAAAGTGTATGAAATTGGTCGTATATTTAGAAACGAAGGCATTTCAACACG 1036 Query 1021 TCACAATCCTGAATTCACGACCATCGAGATGTATGAAGCTTATTCGGACTACCAGAGCAT 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1037 TCACAATCCTGAATTCACGACCATCGAGATGTATGAAGCTTATTCGGACTACCATAGCAT 1096 Query 1081 GATGGACATGGCAGAATTAATCGTCACTCAATGTGCAATGGCAGTTAATGGGAAGCTAAC 1140 ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| Sbjct 1097 GATGGACATGGCAGAATTAATTGTCACTCAATGTTCAATGGCAGTTAATGGGAAGCTAAC 1156 Query 1141 ACTTGATTACCAGGGAACAGAAATCTGCCTCGAGCGGCCTTGGAGAAGAGAAACCATGCA 1200 | ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 1157 AATTGATTACCAGGGAACAGAGATCTGCCTTGAGCGGCCTTGGAGAAGAGAAACCATGCA 1216 Query 1201 TAATCTCGTTAAAGAGATAACAGGAATCAATTTTAGTGAGTTGGGGGAAGATCTCGGAAA 1260 ||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||| Sbjct 1217 TAATCTCGTTAAAGAGATAACAGGAATCAATTTCAGTGAGCTAGGGGAAGATCTCGGAAA 1276 Query 1261 TGCCAAAGACACAGTTCTGCTGGCACTCCGAG-ACGTGCTTGAGCCCAAGGACAAATCTG 1319 ||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||| Sbjct 1277 TGCCAAAGACACAGTTCTGCTCGCACTCC-AGGACGTGCTTGAGCCCAAGGACAAATCTG 1335 Query 1320 GAATTGGAGCTTGCTCTTCCCTAGGCCATCTGCTTAATGAGGTTTTTGAAGTTTTTGTAG 1379 ||||| ||||||||||||||||||||||||| ||||||||| ||||||||||| |||||| Sbjct 1336 GAATTAGAGCTTGCTCTTCCCTAGGCCATCTTCTTAATGAGATTTTTGAAGTTGTTGTAG 1395 Query 1380 AGCCAAAGCTTGTGCAGCCTACATTTGTCTTGGACTACCCAGTCGAAATATCTCCTTTGG 1439 ||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| Sbjct 1396 AGCCAAAGCTTGTGCAGCCCACATTTGTCTTGGACTACCCAATCGAGATATCTCCTTTGG 1455 Query 1440 CCAAGCCACATCGCAGCAATGCAGCTTTGACTGAAAGATTTGAGCTGTTTATCTGTGGCC 1499 |||||||||||||| ||||||| | |||||||||||||||||||||||| |||||||| | Sbjct 1456 CCAAGCCACATCGCGGCAATGCCGGTTTGACTGAAAGATTTGAGCTGTTCATCTGTGGTC 1515 Query 1500 GTGAAATGGCAAACGCATTCTCTGAATTGACTGATCCCGTGGACCAGAGGACGCGGTTGG 1559 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1516 GTGAAATGGCAAACGCATTCTCTGAATTGACTGATCCCGTGGACCAGAGGACACGGTTGG 1575 Query 1560 AAGAGCAAGTAAGGCAACATAACGCAAAGAGAGCAGAGGCTGCACCGGAATCTCCTGAAC 1619 |||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||| Sbjct 1576 AAGAGCAAGTAAGGCAGCATAACGCAAAGAGAGCAGAGGCTGTTCGGGAATCTCCTGAAC 1635 Query 1620 CAAACGCAAAGAAAgatgatgatgatgatgaGTCATACGAGGTGGCCCTTGACGAAGACT 1679 |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct 1636 CAAACGCAAAGAAAGATGATGATGATGATGAGTCATACGAAGTGACCCTTGACGAAGACT 1695 Query 1680 TTCTCACTGCCCTGGAATATGGAATGCCTCCGGCTTCGGGAATGGGGCTTGGAATTGACA 1739 ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1696 TTCTCACTGCCTTGGAATACGGAATGCCTCCGGCTTCGGGAATGGGGCTTGGAATTGACA 1755 Query 1740 GGCTGGTGATGCTGTTGACAAACTCCGCGAGTATAAGAGACGTGATTGCTTTTCCTGTTC 1799 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 1756 GGCTGGTGATGCTGTTGACGAACTCCGCGAGTATAAGAGACGTCATTGCTTTTCCTGTTC 1815 Query 1800 TGAAAGTTCAGCAGTAACTCTTAATCATGCCGAAAGTGGTAATGCATGTTGTAGCTTCTA 1859 ||||| |||||||||||| || || ||||| || |||||||||||||||||||||| || Sbjct 1816 TGAAACTTCAGCAGTAACACTGAAACATGC--AA-GTGGTAATGCATGTTGTAGCTTTTA 1872 Query 1860 TAGCATTCTTGTGTATCTTTCTTTATTGGTGATTTCTCCAGCAGGAAGTTGGAGTAGGA- 1918 |||||||||||||||||||| |||||||||||||||||||||||||||||| | || Sbjct 1873 TAGCATTCTTGTGTATCTTT----ATTGGTGATTTCTCCAGCAGGAAGTTGGAGGAAGAA 1928 Query 1919 TGTGTAACAGACGT-AGTTAGACAGCAAAACAAGAAAAAATTATTTTATTCTTGATGAGT 1977 |||||||||||||| | ||||| ||||||||||||| |||||||||||||||||||| Sbjct 1929 TGTGTAACAGACGTCA-TTAGATAGCAAAACAAGAAG---TTATTTTATTCTTGATGAGT 1984 Query 1978 GCCTAACACAGACAGAACCCACAAATAAAGTTGGATCATTCCATTTTATCCCATTCGGCA 2037 |||||| | | |||||| |||||| || ||||||||||||||||||||||||| |||| Sbjct 1985 GCCTAA-A-A--CAGAACACACAAA-AAC-TTGGATCATTCCATTTTATCCCATTTGGCA 2038 Query 2038 TGTGGTAAACAGAAAGAAACAA 2059 |||||||||||| ||||||||| Sbjct 2039 TGTGGTAAACAGTAAGAAACAA 2060 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 102057707985 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5