BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478742 Length=799 Score E Sequences producing significant alignments: (Bits) Value AT3G13550.1 | Symbols: FUS9, EMB144, COP10, CIN4 | Ubiquitin-co... 1251 0.0 > AT3G13550.1 | Symbols: FUS9, EMB144, COP10, CIN4 | Ubiquitin-conjugating enzyme family protein | chr3:4423349-4424883 REVERSE LENGTH=855 Length=855 Score = 1251 bits (677), Expect = 0.0 Identities = 760/800 (95%), Gaps = 6/800 (1%) Strand=Plus/Plus Query 1 AGAGAATCGGAAGAGGACAACGACGGGAGATGATGACACCTGGCGGAAGCGGAAGATTAA 60 |||| ||||||||| ||| ||||||||||||||||||||||||||||||||| || || | Sbjct 58 AGAGTATCGGAAGACGACGACGACGGGAGATGATGACACCTGGCGGAAGCGGGAGGTTGA 117 Query 61 GGCCGTTACCGACGGCGATGTACGCCGGATATTCAGGAACGGCGTCGTCTTGGGTAGCGA 120 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 GACCGTTACCGACGGCGATGTACGCCGGATATTCAGGAACGGCGTCGTCTTGGGTAGCGA 177 Query 121 AGACTTCAGTTTCTGCTTCTGGGAAGAGGATACAAAGAGAGATGGCGGAGCTTAACGTTG 180 |||||||||||||||| || |||||||||||||| || |||||||| ||||||||| ||| Sbjct 178 AGACTTCAGTTTCTGCGTCAGGGAAGAGGATACAGAGGGAGATGGCTGAGCTTAACATTG 237 Query 181 ATCCGCCTCCTGATTGCTCCGCTGGTCCAAAAGGAGATAATCTCTACCATTGGATCGCCA 240 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 238 ATCCACCTCCTGATTGCTCAGCTGGTCCAAAAGGAGATAATCTCTACCATTGGATCGCCA 297 Query 241 CCATCATTGGTCCTTCGGGAACTCCTTATGAAGGAGGAATCTTTTTTCTCGATATAATTT 300 ||||||||||||||||||||||||| ||||||||||| |||||||| || |||||||||| Sbjct 298 CCATCATTGGTCCTTCGGGAACTCCCTATGAAGGAGGGATCTTTTTCCTGGATATAATTT 357 Query 301 TCCCGTCTGATTATCCATTCAAGCCACCTAAGTTGGTGTTCAAGACTCGGATTTACCATT 360 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 TCCCATCTGATTATCCATTCAAGCCACCTAAGTTGGTGTTCAAGACTCGGATTTACCATT 417 Query 361 GCAATGTCGATACTGCGGGGGATTTAAGTGTGGACATTCTAAGAGATAGTTGGAGTCCAG 420 ||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||| Sbjct 418 GCAATGTTGATACTGCGGGAGATTTAAGTGTGAACATTCTAAGAGATAGTTGGAGTCCAG 477 Query 421 CCCTTACAATCACAAAAGTCTTACAAGCCATCAGATCTATCTTCTTAAAACCTGAACCCT 480 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 CCCTTACAATCACTAAAGTCTTACAAGCCATCAGATCTATCTTCTTAAAACCTGAACCCT 537 Query 481 ATAGTCCAGCTTTACCAGTGATTGCACGGCTCTACTTGACAGATAGAGACAAGCATGACG 540 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 538 ATAGTCCAGCTTTACCGGTGATTGCACGGCTCTACTTGACAGATAGAGAAAAGCATGACG 597 Query 541 AGGTAGCCAAAGAATGGACTTTGCGATTTGCCAAGTGAGATTTTCGATACGAGGAAA-GA 599 ||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| || Sbjct 598 AGGTAGCCAAAGAATGGACATTGCGATTTGCCAAGTGAGATCTTCAATACGAGGAAAAGA 657 Query 600 CAACTGATGTATTATAAATACACCTAGTTCTTTGGTTAGTTAATGGTCATCAATGTACAT 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 CAACTGATGTATTATAAATACACCTAGTTCTTTGGTTAGTTAATGGTCATCAATGTACAT 717 Query 660 CCATCAAAGTGGAACCACAATGTTAGATGGCCAAGAAAGAAAGTTGTTTGCTCAGATAAT 719 ||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 718 TCATAAAAGTGGAACCACAATGTTAGATGGCCAAGAAA-A---TTGTTTGCTCAGATAAT 773 Query 720 AGGAAACAGTGTGAGGTAGGACCAATCCTCAACAACTCCCAATTTATTGAAGGTTACACA 779 ||| |||| |||||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 774 AGGCAACAATGTGAGGTAGGACCAATCCTCAACAACTCC-AATTTATTGAAGGTTATACA 832 Query 780 ATTTAGTGTCAAATCTTTTC 799 |||||||||||||||||||| Sbjct 833 ATTTAGTGTCAAATCTTTTC 852 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38881229778 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5