BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478815 Length=493 Score E Sequences producing significant alignments: (Bits) Value AT3G14060.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 758 0.0 > AT3G14060.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54120.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:4657046-4657601 REVERSE LENGTH=556 Length=556 Score = 758 bits (410), Expect = 0.0 Identities = 467/495 (94%), Gaps = 2/495 (0%) Strand=Plus/Plus Query 1 AAACCATCTTTCACTTTCTTCCTTATATAAAATTCTCTCGCGAGATTTCTATGGATCCCC 60 |||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| Sbjct 1 AAACCATCTTTCACTTTCTTCCTTCTAAAAAATTCTCTCGCGGGATTTCTATGGATCCCC 60 Query 61 ATTTGGTCATCACTGCCACCTCCAGCGCATTCCGGTGGCCGTCAAGTCACCGGAAGATCT 120 |||| |||||||||||| ||||||||||||||||||||||||| |||| ||| ||||||| Sbjct 61 ATTTAGTCATCACTGCCGCCTCCAGCGCATTCCGGTGGCCGTCGAGTCGCCGAAAGATCT 120 Query 121 ATCTCCGTCGGCGTAAGCCACAAGTTGTGCGTCTCGGCGGGAAAAGCAGTACGCCACGTG 180 |||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct 121 ATCTCCGTCGTCGTAAACCACAAGTTGTGCGTCTCGGCGGGAAAAACAGTACGCCACGTG 180 Query 181 GAAGGTTCTCGCTTAAGAAGGTGGTAACGAGGATGAGACTCAAGTGGCTGAGACTGTACT 240 | || |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 181 GTAGTTTCTCGCTCAAGAAGGTGGTGACGAGGATGAGACTCAAGTGGCTGAGACTGTACT 240 Query 241 ACGTGAGGCTCGTGAAGAAAATCAAAGCGTATTATCGTACTATAGTGAAGGAGTTCGAGG 300 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 241 ACGTGAGGCTCGTGAAGAAGATCAAAGCGTATTATCGTACTATAGTGAAAGAGTTCGAGG 300 Query 301 ACGCCGGAGCCGCCACCATCCAGCAGCGCATGACGGTGGAAACAGCTGCTTTTGCCGCTC 360 | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 301 AAGCCGGAGCCGCCACCATCCAGCAGCGCATGACGGTGGAAACGGCTGCTTTTGCCGCTC 360 Query 361 CTGGCTTAGGCTTATCTTTCTGTCCCATGTCCGGCTACGTCGACCAGCCTCGtttttttC 420 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 361 CTGGCTTAGGCTTATCTTTCTGTCCCATGTCCGGCTACGTCGACCAACCTCGTTTTTTTC 420 Query 421 TTGTATAGCTAAATTATTTAACTC--GAGTATCAAATTAATTACCTTCATAATTTTGGAG 478 ||||||| ||||||||| | ||| |||||||||||||||||||||||||||||||| | Sbjct 421 TTGTATAACTAAATTATCTCACTTTTGAGTATCAAATTAATTACCTTCATAATTTTGGGG 480 Query 479 GTGTTTTAAATTTCC 493 ||||||||||| ||| Sbjct 481 GTGTTTTAAATATCC 495 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23509580796 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5