BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg478815

Length=493
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G14060.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   758    0.0  


> AT3G14060.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G54120.1); 
Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:4657046-4657601 
REVERSE LENGTH=556
Length=556

 Score =  758 bits (410),  Expect = 0.0
 Identities = 467/495 (94%), Gaps = 2/495 (0%)
 Strand=Plus/Plus

Query  1    AAACCATCTTTCACTTTCTTCCTTATATAAAATTCTCTCGCGAGATTTCTATGGATCCCC  60
            |||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct  1    AAACCATCTTTCACTTTCTTCCTTCTAAAAAATTCTCTCGCGGGATTTCTATGGATCCCC  60

Query  61   ATTTGGTCATCACTGCCACCTCCAGCGCATTCCGGTGGCCGTCAAGTCACCGGAAGATCT  120
            |||| |||||||||||| ||||||||||||||||||||||||| |||| ||| |||||||
Sbjct  61   ATTTAGTCATCACTGCCGCCTCCAGCGCATTCCGGTGGCCGTCGAGTCGCCGAAAGATCT  120

Query  121  ATCTCCGTCGGCGTAAGCCACAAGTTGTGCGTCTCGGCGGGAAAAGCAGTACGCCACGTG  180
            |||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct  121  ATCTCCGTCGTCGTAAACCACAAGTTGTGCGTCTCGGCGGGAAAAACAGTACGCCACGTG  180

Query  181  GAAGGTTCTCGCTTAAGAAGGTGGTAACGAGGATGAGACTCAAGTGGCTGAGACTGTACT  240
            | || |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  181  GTAGTTTCTCGCTCAAGAAGGTGGTGACGAGGATGAGACTCAAGTGGCTGAGACTGTACT  240

Query  241  ACGTGAGGCTCGTGAAGAAAATCAAAGCGTATTATCGTACTATAGTGAAGGAGTTCGAGG  300
            ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct  241  ACGTGAGGCTCGTGAAGAAGATCAAAGCGTATTATCGTACTATAGTGAAAGAGTTCGAGG  300

Query  301  ACGCCGGAGCCGCCACCATCCAGCAGCGCATGACGGTGGAAACAGCTGCTTTTGCCGCTC  360
            | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  301  AAGCCGGAGCCGCCACCATCCAGCAGCGCATGACGGTGGAAACGGCTGCTTTTGCCGCTC  360

Query  361  CTGGCTTAGGCTTATCTTTCTGTCCCATGTCCGGCTACGTCGACCAGCCTCGtttttttC  420
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  361  CTGGCTTAGGCTTATCTTTCTGTCCCATGTCCGGCTACGTCGACCAACCTCGTTTTTTTC  420

Query  421  TTGTATAGCTAAATTATTTAACTC--GAGTATCAAATTAATTACCTTCATAATTTTGGAG  478
            ||||||| ||||||||| | |||   |||||||||||||||||||||||||||||||| |
Sbjct  421  TTGTATAACTAAATTATCTCACTTTTGAGTATCAAATTAATTACCTTCATAATTTTGGGG  480

Query  479  GTGTTTTAAATTTCC  493
            ||||||||||| |||
Sbjct  481  GTGTTTTAAATATCC  495



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23509580796


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5