BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478822
Length=2161
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14090.1 | Symbols: ATEXO70D3, EXO70D3 | exocyst subunit exo... 2217 0.0
> AT3G14090.1 | Symbols: ATEXO70D3, EXO70D3 | exocyst subunit exo70
family protein D3 | chr3:4669253-4671575 REVERSE LENGTH=2238
Length=2238
Score = 2217 bits (1200), Expect = 0.0
Identities = 1341/1409 (95%), Gaps = 10/1409 (1%)
Strand=Plus/Plus
Query 761 ATCAGGAAATGGATTCGTGCAGCTAAAGTTTGCATTAGAGTTGTTTTCTCTAGTGAGAAG 820
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 832 ATCAGGAAATGGATTCGTGCTGCTAAAGTTTGCATTAGAGTTGTTTTCTCTAGTGAGAAG 891
Query 821 AGACTATGTGAGCAGCTATTTGATGGTATTTGCACGGCTATGGATGAGACTTGTTTCATG 880
||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 892 AGACTATGTGAGCAGCTCTTTGATGGTATTTGCACTGCCATGGATGAGACTTGTTTCATG 951
Query 881 GAGACAGTGAAGGCCTCTGCTCTGCGACTTTTCACTTTCCCTGAAGCTATAAGTATCAGT 940
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 952 GAGACAGTGAAGGCTTCTGCTCTGAGACTTTTCACTTTCCCTGAAGCTATAAGTATCAGT 1011
Query 941 AGAAGATCACCTGAGAAGCTTTTCAAGATTCTTGATTTACACGATGCTTTGACCGATATG 1000
|||||||||||||||||||| |||||||||||||||||||| |||||||| || ||||||
Sbjct 1012 AGAAGATCACCTGAGAAGCTGTTCAAGATTCTTGATTTACATGATGCTTTAACGGATATG 1071
Query 1001 TTACCGGATATTGAAGCAATCTTTGACTCGGATTCTTCAGATGCTATTAGGGCTCAGGCC 1060
|| |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 1072 TTGCCGGATATTGAAGCAATCTTTGACTCAGATTCATCAGATGCTATTAGAGCTCAGGCT 1131
Query 1061 GTTGAGATTCAATCGAGACTAGCGGAAGCAGCGAGAGGTATACTTTCGGAATTTGAGAAT 1120
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1132 GTTGAGATTCAATCGAGGTTAGCGGAAGCAGCGAGAGGTATACTTTCGGAGTTTGAGAAT 1191
Query 1121 GCTGTTCTTCATGAACCTTCGATAGTTCCTGTCCCTGGAGGAACGATTCATCCATTGACA 1180
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 GCGGTTCTTCGCGAACCTTCGATAGTTCCTGTCCCTGGAGGAACGATTCATCCATTGACA 1251
Query 1181 AGGTATGTGATGAACTACATTGTTATGATCTCTGATTATAAGCAAACACTGGATGATCTC 1240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1252 AGGTATGTGATGAACTACATTGTTATGATCTCTGATTATAAGCAAACGTTGGATGATCTC 1311
Query 1241 ATCATGTCGAATCCTTCAAGTGGGTCTGATCCAAACACACCAGATATGGATTTCACGGAG 1300
|||||||||||||| || | ||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1312 ATCATGTCGAATCCCTCTACTGGTTCTGATCCAAACACACCGGATATGGATTTCACGGAG 1371
Query 1301 CTAGAGAGTAAATCTCCATTGGATTTGCATTTGATATGGTTGATTGTGGTCTTGCATTTC 1360
| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 TTGGATAGTAAATCTCCGTTGGATTTGCATTTGATATGGTTGATTGTGGTCTTGCATTTC 1431
Query 1361 AACTTAGAAGAGAAATCCAAGCACTATAGAGACACATCTCTATCTCACATATTCATAATG 1420
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1432 AACTTAGAAGAGAAATCCAAGCACTATAGAGACACATCTCTAGCTCACATATTCATCATG 1491
Query 1421 AACAACATCCATTACATTGTTCAGAAAGTGAAAAGGTCACCGGAGCTAAGAGAAATGATT 1480
||||||||||||||||||||||||||||||||||||||||| || ||| |||| ||||||
Sbjct 1492 AACAACATCCATTACATTGTTCAGAAAGTGAAAAGGTCACCAGAACTACGAGAGATGATT 1551
Query 1481 GGAGACCATTATTTAAGGAAACTCACTGGGATATTTAGACATGCTGCCACAAACTACCAG 1540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 GGAGACCATTATTTAAGGAAACTCACTGGGATATTTAGACATGCTGCCACAAACTACCAG 1611
Query 1541 AGAGCGACATGGGTCAGAGTACTGAATAGCCTGAGAGATGAAGGATTACATGTGACTGGG 1600
||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1612 AGAGCTACATGGGTCAGAGTACTGAATAGTTTGAGAGATGAAGGATTACATGTGAGTGGG 1671
Query 1601 AGTTTCTCCTCAGGTGTATCAAGAAGTGCACTAAGAGAAAGGTTTAAGGCATTCAATACA 1660
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1672 AGTTTCTCCTCAGGTGTATCAAGAAGTGCATTAAGAGAGAGGTTTAAGGCATTCAATACA 1731
Query 1661 ATGTTCGAAGAGGTTCACAGGATTCAGTCCACATGGTCGGTTCCAGATGCTCAGCTTAGA 1720
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1732 ATGTTCGAAGAGGTTCACAGGACTCAGTCCACATGGTCGGTTCCAGATGCTCAGCTTAGA 1791
Query 1721 GAAGAACTCCGAATATCGCTATCCGAGCATCTAATCCCTGCTTATAGATCGTTTCTTGGA 1780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 GAAGAACTCCGAATATCGCTATCCGAGCATCTAATCCCTGCTTATAGATCGTTTCTTGGA 1851
Query 1781 AGGTTCAGGGGTCATATAGAGAGCGGAAGACACCCTGAGAACTATTTGAAATATTCTGTT 1840
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1852 AGGTTCAGGGGTCATATAGAGAGTGGAAGACACCCTGAGAACTATTTGAAATATTCGGTT 1911
Query 1841 GAAGATATCGAGACCATCGTTCTAGATTTCTTCGAAGGATATACCACACCACCACACTTG 1900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1912 GAAGATATCGAGACCATCGTTCTAGATTTCTTCGAAGGATATACCACACCACCACACTTG 1971
Query 1901 AGGAGGCGATAAAAGAAGATGGAAAAACGGAGAGTTCG-TCTTCTTTCTTTCTTTTTTCA 1959
|||||||||||||||||||| ||||| | |||||||| ||||||||||||| |||||||
Sbjct 1972 AGGAGGCGATAAAAGAAGATCGAAAACCCGAGAGTTCTATCTTCTTTCTTTCGTTTTTCA 2031
Query 1960 GCCACATTAGGATGTCATAGAAATAGAGCCATTCTTTGAATTTTTATTCACGGGTT-CCT 2018
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 2032 GTCACATTAGGATGTCATAGAAATAGAACCATTCTTTGAATTTTTATTCACGGGTTTCCT 2091
Query 2019 GCCCGGTGGAATAATCTCCAGGTAAACATATATTTGTGTGTTGTTGTTTGTGCCATATGT 2078
||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||
Sbjct 2092 GCCCGGTGGAATAATCTCCAGGTGAACATAT-TT-GTGTGTTGTTGTTTGTGCCATATGT 2149
Query 2079 CTTCT-TTTA-----GTCCTGATTGATCACAGAACCAATAAGTACCATGTAAATTTTGCA 2132
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2150 CTTCTATTTATAAAAGTCCTGATTGATCACAGAACCAATAAGTACCATGTAAATTTTGCA 2209
Query 2133 ATGTGCCACGTCTTCTACTCTTTTGCTCC 2161
|||||| ||||| ||||||| ||||||||
Sbjct 2210 ATGTGCGACGTCCTCTACTCATTTGCTCC 2238
Score = 1131 bits (612), Expect = 0.0
Identities = 726/777 (93%), Gaps = 23/777 (3%)
Strand=Plus/Plus
Query 1 AAAATAAAAATCGAAGTGGTTTCTTACC-AAAAAT----CGATCTCCTTCACGGATTTTC 55
|||| ||||| ||||||||||||||||| |||||| | |||||||||||| |||| |
Sbjct 25 AAAAAAAAAACCGAAGTGGTTTCTTACCAAAAAATCAACCAATCTCCTTCACGAATTTCC 84
Query 56 ATCTGAGAAGAATTTGAATCGGTGGAGATGGAACCGCCGGAGAATAGTTTAGATTCCGAT 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 85 ATCTGAGAAGAATTTGAATCGGTGGAGATGGAACCGCCGGAGAATAGTTTAGATTCCGAT 144
Query 116 GGTTCGAAGTTAGAGACGGCGGAGAGGATAATACTCCGGTGGGACTCAGCGGCGACTGAT 175
|||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 145 GGTTCGAACTTAGAGACAGCGGAGAGGATAATACTCCGGTGGGACTCAGCAGCGACTGAT 204
Query 176 GGAGCTAGAGGGAAGATGATTTTCCAAAGCGATCGTGATGAGGTGGATCGGTTTCTCCGA 235
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 205 GGAGCAAGAGGGAAGATGATTTTCCAAAGCGATCGTGATGAGGTGGATCGGTTTCTTCGA 264
Query 236 GCCGTTGATGAAATCCAACGGTCCTTATCTTCTGTCTCCTTCTCTTCTTCTTCCTCCTCC 295
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 265 GCCGTTGATGAAATCCAACGGTCCTTATCTTCTGTCTCTTTCTCTTCTTCTTCCTCCTCC 324
Query 296 GCCGCCA---------CCA-C--AGTCGATGAACACGAGGTCAAAGCCAACTCAGCTATC 343
||||||| ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 325 GCCGCCACCTCCGCCGCCACCGTAGTCGATGAACACGAGGTCAAAGCCAACTCAGCTATT 384
Query 344 CAAATCGCCATGGCTAGACTCGAAGATGAGTTCCGTAACATTCTTCTCTCCCACACAACT 403
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 385 CAAATCGCTATGGCTAGACTCGAAGACGAGTTCCGTAACATTCTTCTCTCCCACACAACT 444
Query 404 ACTTTCGAGCCTGATTCACTTTTTCTTGAGGAATCATCATCAGTCTCTCCGTCTTTATGC 463
||||||||||||||||||||||| || |||||| | |||||||||||||||||||| |
Sbjct 445 ACTTTCGAGCCTGATTCACTTTTCCTCGAGGAA-C--CATCAGTCTCTCCGTCTTTAACC 501
Query 464 GTCGAGGTTGGAGAAGATACCACCACCGTAACTACCGAAGAAGAAGAATTAAATTCGCCA 523
||||| |||||||||||| |||||||||||| |||||||||||||||||||||| |||
Sbjct 502 GTCGAAGTTGGAGAAGAT---ACCACCGTAACTCCCGAAGAAGAAGAATTAAATTCTCCA 558
Query 524 GGTGGTTCCGGTTCAAGCCGGTTAACTCGTAGAAGAAGCAGTTACAGATCCACTAGCAGT 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 GGTGGTTCCGGTTCAAGCCGGTTAACTCGTAGAAGAAGCAGTTACAGATCCACTAGCAGT 618
Query 584 ATACGAGAAATGGATCTGATCTCGCCGGAAGCAGTTTCTGATCTGAGATCGATTGTTCAA 643
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 619 ATACGAGAAATGGATCTGATTTCGCCGGAAGCAGTTTCTGATCTAAGATCGATTGTTCAA 678
Query 644 CGAATGGTCGCCGCCGGTTACTCTCGTGAGTGTATCCAAGTATACGGAACTGTTCGCAAA 703
||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 679 CGAATGGTCGCCGCCGGTTACTCTCGTGAATGTATCCAAGTCTATGGAACTGTTCGCAAA 738
Query 704 TCAGCCATGGAAACAATATTTAAGCAGCTTGGGATTGTGAAGATAAGCATTGGAGAT 760
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 739 TCAGCCATGGAAGCAATATTTAAGCAGCTTGGGATTGTGAAGATAAGCATTGGTGAT 795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107178163575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5