BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478836
Length=1230
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14210.1 | Symbols: ESM1 | epithiospecifier modifier 1 | chr... 1784 0.0
AT1G54020.2 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 377 1e-103
> AT3G14210.1 | Symbols: ESM1 | epithiospecifier modifier 1 | chr3:4729823-4731803
FORWARD LENGTH=1483
Length=1483
Score = 1784 bits (966), Expect = 0.0
Identities = 1126/1204 (94%), Gaps = 8/1204 (1%)
Strand=Plus/Plus
Query 1 TGAAGTTCACCACCCGACCAGTCTTACTCTCTCTTAACAAATATTATTGAGATGGCAGAC 60
|||||||||| ||| |||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 13 TGAAGTTCACGACCAAACCAGTCTTACTCTCTCTTAACTAATAATATTGAGATGGCAGAC 72
Query 61 AATTTTAATTTGGTGAGTGTTCTGGGAGTCTTATTGGTATTAACCATCTTCCATAATCCG 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 AATTTGAATTTGGTGAGTGTTCTGGGAGTCTTATTGGTATTAACCATCTTCCATAATCCG 132
Query 121 ATCATGGTCTACGCCGGCGAGGGTGTTCCCAACGTAGCGTTGTTCACTTTCGGAGACTCT 180
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 133 ATCATCGTCTACGCCGGCGAGGGTGTTCCCAACGTAGCTTTGTTCACTTTCGGAGACTCT 192
Query 181 TACTACGACGCCGGAAACAAAGTGTTTCTCAGCCAAAGAAAAGATCTTCCACAAATCTAT 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 193 TACTACGACGCCGGAAACAAAGTGTTTCTCAGCCAAAGGAAAGATCTTCCACAAACCTAT 252
Query 241 TGGCCTTACGGAAAATCCCGCGACTACCCTAATGGCAAGTTTTCCGACGGCCACATCGTT 300
||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 253 TGGCCCTACGGAAAATCCCGCGACTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTC 312
Query 301 CCCGATTTTATCGCTGATTTCATCTCTATTCCGAATGGAGTACTCCCACCGGCACTTAAA 360
||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 313 CCCGACTTCATCGCTGATTTCATCTCTATTCCGAATGGAGTACTCCCACCGGTGCTTAAA 372
Query 361 CCGGGTGTTGATATTTCACGTGGAGTCAGCTTAGCCGTCGCCGATGCTTCTATTCTCGGA 420
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 373 CCGGGCGTTGATATTTCACGTGGAGTCAGCTTTGCCGTCGCCGATGCTTCTATTCTCGGA 432
Query 421 GCTCCAGCTGAATCTATGACACTAAATCAACAAGTGGTTAAATTCAAAACTATGAAATCT 480
|| || | |||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 433 GCGCCGGTTGAATCTATGACACTAAATCAACAGGTGGTTAAATTCAAAAATATGAAATCG 492
Query 481 AATTGGAACGACAGCTACATCGGGAAATCACTGTTTATGATATACATTGGTACGGAAGAT 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 493 AATTGGAACGACAGCTACATCGAGAAATCACTGTTTATGATATACATTGGTACGGAAGAT 552
Query 541 TATTTGAATTTCACCAAGGCCAACCCCACGGCAGACGCTTCTGCTCAACAAGCTTTTGTC 600
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 553 TATTTGAATTTCACCAAGGCCAACCCCAATGCAGACGCTTCTGCTCAGCAAGCTTTTGTC 612
Query 601 ACTTCCGTTACTAACCAATTAAAGAACGACATCGGTTTGTTGCACTCTTGGGGAGCGAGG 660
||| ||||| ||||| |||||||||||||||| |||||| |||||| |||||||||
Sbjct 613 ACTAACGTTATTAACCGATTAAAGAACGACATCAAATTGTTGTACTCTTTGGGAGCGAGT 672
Query 661 AAATTCGTGGTTCAATTGCTAGCACCATTGGGATGCTTACCGATCGTGAGACAAGAATAC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 AAATTCGTGGTTCAATTGCTAGCACCATTGGGATGCTTACCGATCGTGAGACAAGAATAC 732
Query 721 AAAACCGGCAACGACTGTTATGAGCCGCTCAATGATTTGGCCAAACAACACAACGAAAAA 780
|||||||||||||| ||||| |||| |||||||||||||||||||||||| |||| ||||
Sbjct 733 AAAACCGGCAACGAGTGTTACGAGCTGCTCAATGATTTGGCCAAACAACATAACGGAAAA 792
Query 781 ATCGGCCCAATGTTAAACGCATTTGCTAAA-TCTAGTACTAGCCCCAATGGTTTTCAGTT 839
||||| ||||||||||||| |||||||||| | ||||||||||||| |||||||||||||
Sbjct 793 ATCGGTCCAATGTTAAACGAATTTGCTAAAAT-TAGTACTAGCCCCTATGGTTTTCAGTT 851
Query 840 CACCGTCTTCGATTTCTACAACGCCGTTCTTCGTAGGATTACGACAGGAAGAAGTCTTAA 899
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 852 CACCGTCTTCGATTTCTACAACGCCGTTCTTCGTAGGATTGCGACAGGAAGAAGTCTTAA 911
Query 900 CTACAGATTGTACATAACGAATTCGTCCTGTTGCGGTGTTGGGACGCACAATGCATATGG 959
||||||||| | | |||||||| | || ||||||||||||||||| ||||||||||||||
Sbjct 912 CTACAGATTCTTCGTAACGAATACTTCGTGTTGCGGTGTTGGGACACACAATGCATATGG 971
Query 960 TTGCGGAATGGGAAACGTGCACTCGAAGCTATGTGAGTACCAAAGATCTTACTTCTTCTT 1019
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 TTGCGGAAAGGGAAACGTGCACTCGAAGCTATGTGAGTACCAAAGATCTTACTTCTTCTT 1031
Query 1020 CGATGGACGTCACAACTCAGAGAAGGTTCAGGAGCAATTTGCTCATCTTCTATATGGAGC 1079
|||||||||||||||| ||||||||| ||||||| || | ||||||||||||||||||||
Sbjct 1032 CGATGGACGTCACAACACAGAGAAGGCTCAGGAGGAAATGGCTCATCTTCTATATGGAGC 1091
Query 1080 CGACCCT-AGCGTTGTCCAGCCAATGACGGTCCGTGAGCTAATCGTCTACCCAACCGGAG 1138
||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1092 CGACCCTGA-CGTGGTCCAGCCAATGACGGTCCGTGAGCTAATCGTCTACCCAACTGGAG 1150
Query 1139 AGACTATGCGTGAGTATTGGGAACCTAACAAGTCTT--CTATTCGTCGTCGTCCATCTGG 1196
| ||||||||||||||||||||||| ||||| ||| |||| |||||||| || ||| |
Sbjct 1151 AAACTATGCGTGAGTATTGGGAACCCAACAA--CTTGGCTATCCGTCGTCGGCCGTCTCG 1208
Query 1197 TGAC 1200
||||
Sbjct 1209 TGAC 1212
> AT1G54020.2 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr1:20161670-20163743 REVERSE LENGTH=1291
Length=1291
Score = 377 bits (204), Expect = 1e-103
Identities = 758/1020 (74%), Gaps = 59/1020 (6%)
Strand=Plus/Plus
Query 160 TTGTTCACTTTCGGAGACTCTTACTACGACGCCGGAAACAAAGTGTTTCTCAGCCAAAG- 218
||||||||||||||||| || ||| |||||| ||||| ||| ||| |||| | |||
Sbjct 137 TTGTTCACTTTCGGAGATTCCAACTTCGACGCTGGAAATAAAAAGTTCCTCA--C-AAGT 193
Query 219 AAAAGATCTTCCACAAATCTATTGGCCTTACGGAAAATCCCGCGACT-ACCCTAATGGCA 277
| ||||| |||| || |||||||||||| ||||| || || | ||||||| ||||
Sbjct 194 GCTCCA-CTTCCTCAAAACTTTTGGCCTTACGGTAAATCTCGAGA-TGACCCTAAGGGCA 251
Query 278 AGTTTTCCGACGGCCACATCGTTCCC-GATTTTATCGCTGATTTCATCTCTATTCCGA-A 335
||||||| || ||| | || | |||| || ||||| || | ||||| || || | |
Sbjct 252 AGTTTTCTGATGGCAAAATTG-TCCCGGACTTTATTGCAAAATTCATGGGGATACC-ACA 309
Query 336 TGGAGTACTCCCACCGGCACTTAAACCGGGTGTTGATATTTCACGTGGAGTCAGCTTAGC 395
|| | | || ||||| || ||||| || ||| | ||||| |||| |||||| ||
Sbjct 310 -CGA-T-TTACCGCCGGCGCTAAAACCCGGCACCGATGTGTCACGAGGAGCCAGCTTCGC 366
Query 396 CGTCGCCGAT--GCTTCTATTCTCGGAGCTCCAGCTGAATCTATGACACTAAATCAACAA 453
||||| | | ||||| ||||| ||| ||||| || ||| || | || |||||||||
Sbjct 367 CGTCG--GGTCCGCTTCCATTCTTGGATCTCCAAAAGATTCTTTGGCTCTGAATCAACAA 424
Query 454 GTG-GTTAAATTCAAAAC-TATGAAATCTAATTGGAACGACAG-CTACA-TCGGGAAATC 509
||| | |||||| || | |||| ||| |||||||| | | |||| || ||||||
Sbjct 425 GTGAG-GAAATTC-AATCAGATGATATCAAATTGGAAAG-TGGATTACATTC-AGAAATC 480
Query 510 ACTGTTTATGATATA-CATTGGTACGGAAGATTATTTGAA-TTTCACCAAGGCCAACCCC 567
| |||||||||| || |||||||| ||||||||| | || ||| ||||| ||| ||
Sbjct 481 AGTGTTTATGAT-TAGCATTGGTATGGAAGATTACTACAACTTT-ACCAAAAACAATCCT 538
Query 568 ACGGCAGACGCTTCTGCTCAACAAGCTTTTGTCACTTCCGTTACTAACCAATTAAAGAAC 627
| || || | |||||||||||||||||| || ||||| || ||||||| || ||||
Sbjct 539 AATGCTGAAGTTTCTGCTCAACAAGCTTTCGTTACTTCTGTCACTAACCGGTTTAAGAGT 598
Query 628 GACATCGGTTTGTTGCACTCTTGGGGAGCGAGGAAATTCGTGGTTCAATTGCTAGCACCA 687
|| ||| |||||| | || | ||||| || |||||||| || || |||||||| |||
Sbjct 599 GATATCAACTTGTTGTATTCATCTGGAGCTAGTAAATTCGTCGTACACTTGCTAGCGCCA 658
Query 688 TTGGGATGCTTACCGATCGTGAGACAAGAATACAAAACCGGCAACGACTGTTATGAGCCG 747
|| || || |||||||||| |||||||||| |||||||| ||| | ||||| |||
Sbjct 659 TTAGGTTGTTTACCGATCGCAAGACAAGAATTTAAAACCGGTAACAATTGTTACGAGAAA 718
Query 748 CTCAATGATTTGGCCAAACAACACAACGAAAAAATCGGCCCAATGTTAAACGCATTTGCT 807
|||||||||||||||||||||||||||| ||||| || || || || |||| | | ||
Sbjct 719 CTCAATGATTTGGCCAAACAACACAACGCTAAAATTGGACCGATTTTGAACGAAATGGCG 778
Query 808 -AAATCTAGTACTAGCCCCAATGGTTTTC-AGTTCACCGTCTTCGATTTCTACAACGCCG 865
||| ||| | | || || |||| | |||||||| ||||||||||||||||
Sbjct 779 GAAA-CTA--A--A-CC-----GGATTTCCAATTCACCGTTTTCGATTTCTACAACGTTA 827
Query 866 TTCTTCGTAGGATTACGACAGGAAGAAGTCTT-AACTACAGATTGTACATAACGAAT-TC 923
||||||| |||| | ||| ||||| | | |||||| | || | | | |||||| |
Sbjct 828 TTCTTCGCAGGA---C-ACA--AAGAAA-CATGAACTACCGGTTTTCCGTGACGAATATA 880
Query 924 GTCCTGTTGCGGTGTTGGGACGCACAATGCATATGGTTGCGGAATGGGAAACGTGCACTC 983
|| |||||||||||||||||||| ||||||||||||| || | |||||||||||
Sbjct 881 -TCGTGTTGCGGTGTTGGGACGCATTATGCATATGGTTGTGGTTTACCTAACGTGCACTC 939
Query 984 GAAGCTATGTGAGTACCAAAGATCTTACTTCTT-CTTCGATGGACGTCACAACTCAGAGA 1042
|||| |||| || || |||||||| ||| | || |||||| | |||||| ||| ||||||
Sbjct 940 GAAGTTATGCGAATATCAAAGATCCTACCT-TTACTTCGACGCACGTCATAACACAGAGA 998
Query 1043 AGGTTCAGGA-GCAATTTGCTCATCTTCTATATGGAGCCGACCCTAGCGTTGTCCAGCCA 1101
| | || || || |||||||||||| | | |||||| ||||| | ||| |||| ||
Sbjct 999 AAGCACAAGAAGCG-TTTGCTCATCTTATCTTTGGAGCTGACCCAAATGTTATCCAACCT 1057
Query 1102 ATGACGGTCCGTGAGCTAATCGTCTACCCAACCGGA-GAGACTATGCGTGAGTATTGGGA 1160
|||| || |||||||| || || || || | ||| |||||||||||| ||||||
Sbjct 1058 ATGAATGTTCGTGAGCTCATGGTGTATCCTGTTA-ATGAGCCTATGCGTGAGTTTTGGGA 1116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60441456180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5