BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478846 Length=913 Score E Sequences producing significant alignments: (Bits) Value AT3G14290.1 | Symbols: PAE2 | 20S proteasome alpha subunit E2 |... 1459 0.0 AT1G53850.1 | Symbols: PAE1, ATPAE1 | 20S proteasome alpha subu... 859 0.0 > AT3G14290.1 | Symbols: PAE2 | 20S proteasome alpha subunit E2 | chr3:4764149-4766586 FORWARD LENGTH=1031 Length=1031 Score = 1459 bits (790), Expect = 0.0 Identities = 876/917 (96%), Gaps = 7/917 (1%) Strand=Plus/Plus Query 1 ACATTGAGGTTTATTTCAGATCGAAATCGAGAAGAAGATGTTTCTCACTAGGACTGAGTA 60 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76 ACATTGAGGTTTATCTCAGATCGAAATCGAGAAGAAGATGTTTCTCACTAGGACTGAGTA 135 Query 61 TGACAGAGGAGTCAATACCTTTTCTCCTGAAGGTCGTCTCTTTCAGGTTGAGTATGCCAT 120 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 136 TGACAGAGGAGTCAATACATTTTCTCCTGAAGGTCGTCTCTTTCAGGTTGAGTATGCCAT 195 Query 121 TGAGGCTATCAAGCTTGGTTCTACTGCTATTGGCGTAAAGACGAAAGAGGGGGTTGTTCT 180 ||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 196 TGAAGCTATCAAGCTTGGTTCTACTGCTATTGGTGTAAAGACGAAAGAGGGAGTTGTTCT 255 Query 181 TGCAGTCGAGAAGCGTATTACTTCGCCTTTGCTGGAACCGAGCAGTGTTGAGAAGATTAT 240 |||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| Sbjct 256 TGCAGTCGAGAAGCGTATTACTTCGCCTTTACTGGAGCCGAGTAGTGTTGAGAAGATTAT 315 Query 241 GGAAATTGATGACCATATAGGTTGTGCCATGAGTGGTCTGATTGCTGACGCGCGAACACT 300 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 316 GGAAATTGATGACCATATAGGTTGTGCTATGAGTGGTCTGATTGCTGACGCGCGAACACT 375 Query 301 TGTTGAGCATGCACGAGTAGAGACCCAAAACCACAGGTTCTCGTATGGTGAGCCAATGAC 360 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 376 TGTTGAGCATGCACGAGTAGAGACCCAGAACCACAGGTTCTCGTATGGTGAGCCAATGAC 435 Query 361 TGTAGAATCTACAACACAAGCGTTGTGTGATCTTGCTTTACGGTTTGGTGAAGGAGATGA 420 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 436 TGTAGAATCTACAACACAAGCTTTGTGTGATCTTGCTTTACGGTTTGGTGAAGGAGAGGA 495 Query 421 AGAGTCAATGTCTCGTCCATTTGGAGTATCCCTTCTCATTGCCGGGCATGATGAAAATGG 480 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 496 AGAGTCAATGTCTCGTCCATTTGGAGTATCCCTTCTCATTGCTGGGCATGATGAAAATGG 555 Query 481 ACCGAGCCTGTACTACACAGATCCATCGGGAACATTCTGGCAATGCAACGCAAAGGCAAT 540 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 556 ACCGAGCCTGTACTACACAGATCCATCGGGAACATTCTGGCAATGCAATGCAAAGGCAAT 615 Query 541 TGGGTCAGGCTCAGAAGGAGCTGATAGTTCTCTCCAAGAGCAATTCAACAAGGATATAAC 600 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 616 TGGGTCTGGCTCAGAAGGAGCTGATAGTTCTCTCCAAGAGCAATTCAACAAGGATATAAC 675 Query 601 TCTTCAAGAAGCTGAAACAATCGCTGTATCTATCCTTAAGCAAGTAATGGAAGAAAAGGT 660 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 676 TCTTCAAGAAGCTGAAACAATAGCTGTATCTATCCTAAAGCAAGTAATGGAAGAAAAGGT 735 Query 661 GACTCCAAACAATGTCGACATTGCCAAAGTCGCACCAGCTTATCACCTCTACACTCCTCA 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 736 GACTCCAAACAATGTCGACATTGCCAAAGTCGCACCAGCTTATCACCTCTACACTCCTCA 795 Query 721 GGAGGTTGAAGCCGTCATCAGTCGTCTATGAAGAAATAAACCGACATTCTCTTCCTGTTA 780 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 796 GGAGGTTGAAGCCGTCATCAGTCGTCTATGAAGAAATAAACCGCCATTCTCTTCCTGTTA 855 Query 781 TCTTACCTGGTCTGTTGGGTAATTTATCAGGCTTG-GTATGCTTCCGGTTATCTAAACCA 839 |||||||| ||||||| ||||||||||||||||| || ||||||||||| ||||||||| Sbjct 856 TCTTACCTTGTCTGTTCGGTAATTTATCAGGCTTCTGTCTGCTTCCGGTTCTCTAAACCA 915 Query 840 AAGACCTTC-TTTCACA-AATG-GCACAATTAATCCTATCGAGTTGAGTTTTATTGAGCT 896 || | || |||| ||| | | ||| || |||||||||||||||||||||||| Sbjct 916 AAAA--TTAGTTTCGTTTAATCAG-ATAATGGATTTTATCGAGTTGAGTTTTATTGAGCT 972 Query 897 TTCTATCTACATTTTTT 913 ||||||||||||||||| Sbjct 973 TTCTATCTACATTTTTT 989 > AT1G53850.1 | Symbols: PAE1, ATPAE1 | 20S proteasome alpha subunit E1 | chr1:20103953-20106015 REVERSE LENGTH=1027 Length=1027 Score = 859 bits (465), Expect = 0.0 Identities = 646/735 (88%), Gaps = 6/735 (1%) Strand=Plus/Plus Query 30 AGAAGAAGATGTTTCTCACTAGGACTGAGTATGACAGAGGAGTCAATACCTTTTCTCCTG 89 |||||||||||||||||||||| |||||||||||||||||||| || || |||||||| | Sbjct 128 AGAAGAAGATGTTTCTCACTAGAACTGAGTATGACAGAGGAGTGAACACTTTTTCTCCAG 187 Query 90 AAGGTCGTCTCTTTCAGGTTGAGTATGCCATTGAGGCTATCAAGCTTGGTTCTACTGCTA 149 |||| | || ||||| || || ||||||||||| ||||||||||||||||||||||| | Sbjct 188 AAGGAAGGCTATTTCAAGTGGAATATGCCATTGAAGCTATCAAGCTTGGTTCTACTGCAA 247 Query 150 TTGGCGTAAAGACGAAAGAGGGGGTTGTTCTTGCAGTCGAGAAGCGTATTACTTCGCCTT 209 |||| |||||||| ||||| || ||||| ||||| |||||||||||||| || ||||| | Sbjct 248 TTGGAGTAAAGACAAAAGAAGGAGTTGTGCTTGCTGTCGAGAAGCGTATCACGTCGCCAT 307 Query 210 TGCTGGAACCGAGCAGTGTTGAGAAGATTATGGAAATTGATGACCATATAGGTTGTGCCA 269 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | Sbjct 308 TGCTGGAACCGAGCAGTGTGGAGAAGATTATGGAAATTGATGACCATATTGGTTGTGCTA 367 Query 270 TGAGTGGTCTGATTGCTGACGCGCGAACACTTGTTGAGCATGC-ACGAGTAGAGACCCAA 328 |||| ||| | |||||||||||||| ||||||||||||||||| | |||| || || ||| Sbjct 368 TGAGCGGTTTAATTGCTGACGCGCGCACACTTGTTGAGCATGCTA-GAGTTGAAACTCAA 426 Query 329 AACCACAGGTTCTCGTATGGTGAGCCAATGACTGTAGAATCTACAACACAAGCGTTGTGT 388 ||||| || ||||||||||||||||| ||||||||||| || ||||||||||| ||||| Sbjct 427 AACCATAGATTCTCGTATGGTGAGCCGATGACTGTAGAGTCCACAACACAAGCACTGTGT 486 Query 389 GATCTTGCTTTACGGTTTGGTGAAGGAGATGAAGAGTCAATGTCTCGTCCATTTGGAGTA 448 ||||| ||||||||||||||||||||||| ||||| ||||||||||| || ||||||||| Sbjct 487 GATCTGGCTTTACGGTTTGGTGAAGGAGAGGAAGAATCAATGTCTCGGCCGTTTGGAGTA 546 Query 449 TCCCTTCTCATTGCCGGGCATGATGAAAATGGACCGAGCCTGTACTACACAGATCCATCG 508 || ||||||||||| || ||||||||||||||||| ||| |||||||||| ||||| || Sbjct 547 TCTCTTCTCATTGCTGGCCATGATGAAAATGGACCAAGCTTGTACTACACTGATCCTTCA 606 Query 509 GGAACATTCTGGCAATGCAACGCAAAGGCAATTGGGTCAGGCTCAGAAGGAGCTGATAGT 568 |||||||||||||| ||||| |||||||||||||| ||||| || |||||||||||||| Sbjct 607 GGAACATTCTGGCAGTGCAATGCAAAGGCAATTGGTTCAGGTTCTGAAGGAGCTGATAGC 666 Query 569 TCTCTCCAAGAGCAATTCAACAAGGATATAACTCTTCAAGAAGCTGAAACAATCGCTGTA 628 ||||| ||||||||||||||||| ||| | |||| ||||||||||| || ||||||||| Sbjct 667 TCTCTTCAAGAGCAATTCAACAAAGATTTGTCTCTACAAGAAGCTGAGACTATCGCTGTA 726 Query 629 TCTATCCTTAAGCAAGTAATGGAAGAAAAGGTGACTCCAAACAATGTCGACATTGCCAAA 688 |||||||| |||||||| ||||||||||||||||||||||| || || || |||||||| Sbjct 727 TCTATCCTAAAGCAAGTTATGGAAGAAAAGGTGACTCCAAATAACGTGGATATTGCCAAG 786 Query 689 GTCGCACCAGCTTATCACCTCTACACTCCTCAGGAGGTTGAAGCCGTCATCAG-TCGTCT 747 || |||||||||||||| ||||||||||| || || || ||||| |||||| | |||||| Sbjct 787 GTAGCACCAGCTTATCATCTCTACACTCCACAAGAAGTCGAAGCAGTCATC-GCTCGTCT 845 Query 748 ATGAA-GAAATAAAC 761 ||| |||| |||| Sbjct 846 TTGATTGAAA-AAAC 859 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44607922536 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5