BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478859
Length=2596
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14400.1 | Symbols: UBP25 | ubiquitin-specific protease 25 |... 3552 0.0
> AT3G14400.1 | Symbols: UBP25 | ubiquitin-specific protease 25
| chr3:4811532-4815515 REVERSE LENGTH=2712
Length=2712
Score = 3552 bits (1923), Expect = 0.0
Identities = 2223/2361 (94%), Gaps = 47/2361 (2%)
Strand=Plus/Plus
Query 1 ATCGCGAAGGGATTGTGGGGTTTGTTGCTGGGCGGGTCTCTTCCCTCGGCAGTTACC-T- 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATCGCGAAGGGATTGTGGGGTTTGTTGCTGGGCGGGTCTCTTCCCTCGGCAGTTACCTTC 60
Query 59 -TC--A-TCGA-----A---------TT---CGA-TC-TTC---TTCTTCAAAATCTTCC 92
|| | |||| | || | | || ||| ||| | ||||||||||
Sbjct 61 ATCGAATTCGATCTTCATCTTCTTCCTTCCCCAACTCTTTCAAATTCGTGAAAATCTTCC 120
Query 93 ATTAATTTCGACTAGAAATTGA-TGCGAAGAAG-CCCCAAAACCGTGAATTAGAAGAGAA 150
||||||||||||| ||||||| || || |||| |||||||| |||||||||||||||||
Sbjct 121 TTTAATTTCGACTACAAATTGATTG-GAGGAAGCCCCCAAAA-CGTGAATTAGAAGAGAA 178
Query 151 AGAGAAAAAGCTCGGAAAACGCGTGGTGGCAAAAGATGCGATCGCAGCTGTTGGCTTGGC 210
|||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 179 AGAG-AAAAGCGAGGAAAACGCGTGGTGACAAAAGATGCGATCGCAGCTGTTGGCTTGGC 237
Query 211 CGCGGCGGCGAGTCAGCGATGAGCGGTTGCTTCGTTGGTTTTCTCCGGCGGAGAATAACC 270
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 238 CGCGGCGGCGAGTCAGCGATGAGCGGTTGCTTGGTTGGTTTTCTCCGGCGGAGAATAACC 297
Query 271 GATTCTGAATGGGATTTAAACTGCAGATGAGCTGGATGCCGAGTCTACTGAGTCAGAAGC 330
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 298 GATTTTGAATGGGATTTAAACTGCAGATGAGCTGGATGCCGAGTCTACTGAGTCAAAAGC 357
Query 331 GTAGGAATGGTCCTCCCTTAGGGTTACGGAATCTCGGCAACACCTGTTACCTCAATAGTG 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GTAGGAATGGTCCTCCCTTAGGGTTACGGAATCTCGGCAACACCTGTTACCTCAATAGTG 417
Query 391 TCCTTCAGTGTCTCACTTTCACTCCTCCTCTCGCTAATTTCTGCCTCACTCACAAACACT 450
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 418 TCCTTCAGTGTCTCACTTTCACTCCTCCTCTCGCTAATTTCTGCCTTACTCACAAACACT 477
Query 451 CCTCTCACTGCGACTCATATGTGGATGGGGAGCGGAAACGGGATTGTCCATTTTGCATAG 510
|||||||||||||| ||||||||||||| ||| ||||| |||||||||||||||||||||
Sbjct 478 CCTCTCACTGCGACACATATGTGGATGGAGAGAGGAAAAGGGATTGTCCATTTTGCATAG 537
Query 511 TTGAGAAAAGAATAGCAAGGTCTCTTAGTGTGGATCTAACAACCGATGCGCCTAACAAGA 570
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 538 TTGAGAAAAGAATAGCAAGGTCTCTTAGTGTGGATCTAACTACCGATGCGCCTAACAAGA 597
Query 571 TTTCAAGCTGTCTCAAAATTTTTGCTGAGCATTTTAAGCTTGGGCGTCAAGAGGATGCTC 630
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 598 TTTCAAGCTGTCTCAAAATTTTTGCTGAGCATTTTAAGCTTGGTCGTCAAGAGGATGCTC 657
Query 631 ATGAGTTCTTGCGGTATGTCATTGATGCATGCCACAATACGTCTCTCCGCCTCAAGAAGT 690
||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 658 ATGAGTTCTTGCGCTATGTCATTGATGCATGCCACAATACGTCTCTCAGACTCAAGAAGT 717
Query 691 TGAGGAT-CAAGGGTAATGAGCCCTTTAATGGCAATACTGTCGTCAAGGAGATTTTTGGT 749
|| ||| ||| ||||| ||||||||||||||||||| |||||| |||||||||||||||
Sbjct 718 TG-CGATACAACGGTAACGAGCCCTTTAATGGCAATAGTGTCGTGAAGGAGATTTTTGGT 776
Query 750 GGTGCTTTGCAGAGCCAGGTCAAGTGTTTGTCATGTGGTGCCGAGTCTAATAAAGCCGAT 809
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 777 GGTGCTTTGCAGAGCCAGGTCAAGTGTTTGTCTTGTGGTGCGGAGTCTAATAAAGCCGAT 836
Query 810 GAGATTATGGATATCAGTCTTGAAATTTTGCATAGTAGCTCTATCAAGGAGTCTA-TGCA 868
||||||||||||||||||||||| |||||||| ||||||||| | |||||||| | ||||
Sbjct 837 GAGATTATGGATATCAGTCTTGAGATTTTGCAGAGTAGCTCTGTGAAGGAGTC-ATTGCA 895
Query 869 AAAGTTTTTTCAATCAGAGATTTTAGATGGCAACAATAAGTATAAATGCGAGACCTGTGA 928
|||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 896 AAAGTTCTTTCAATCAGAGATTTTAGATGGCAACAATAAGTATAGATGCGAGTCCTGTGA 955
Query 929 AAAACTGGTGACGGCGAGGAAGCAGATGTCTATACTCCAAGCGCCTAATATCCTTGTTAT 988
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 956 AAAACTGGTGACGGCGAGGAAGCAGATGTCTATACTGCAAGCGCCTAATATCCTTGTTAT 1015
Query 989 CCAATTGAAAAGGTTTGGGGGTATTTTTGGTGGGAAGATTGATAAAACCATTTCATTTGG 1048
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1016 CCAATTGAAAAGGTTTGGGGGCATTTTTGGTGGGAAGATTGATAAAGCCATTTCATTTGG 1075
Query 1049 TGAGATTCTGGTTCTCTCGAACTTCATGAGTAAGGCAAGCAAGGACCCTCAACCGGAATA 1108
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1076 TGAGATTCTGGTTCTCTCGAACTTCATGAGTAAAGCAAGCAAGGACCCTCAACCGGAATA 1135
Query 1109 CAAGCTTTTTGGGATAATTGTGCACTCAGGATTTTCTCCTGAATCTGGGCACTATTATGC 1168
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 CAAGCTCTTTGGGATAATTGTGCACTCAGGATTTTCTCCTGAATCTGGGCACTATTATGC 1195
Query 1169 ATACGTTAAGGATTCCTTGGGTCGATGGTATTGCTGCAATGATTCGTTTGTCTCGCTCTC 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 ATACGTTAAGGATTCCTTGGGTCGATGGTATTGCTGCAATGATTCGTTTGTCTCGCTCTC 1255
Query 1229 CACCTTGCAGGAGGTTTTATCAGAGAAAGCTTATATCCTGTTTTTCAGCCGTTCAAACCA 1288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 CACCTTGCAGGAGGTTTTATCAGAGAAAGCTTATATCCTGTTTTTCAGCCGTTCAAACCA 1315
Query 1289 GAGGCCAGCGTCTGCTAAAACTCTGGTAACATCCAATGGGACTACATCTCATGAAGTTAA 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 GAGGCCAGCGTCTGCTAAAACTCTGGTAACATCCAATGGGACTACATCTCATGAAGTTAA 1375
Query 1349 TGGCTGTGAGACATCAAATCCCCAGAAGTTTATTGGGCCCCTTAATGGTGTCAACATGAA 1408
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1376 TGGCTGTGAGACATCAAATCCCCAGAAGTTTATTGGGCCCCTTAATGGTTTCAACATGAA 1435
Query 1409 ACCTCAAGCCGAGCAGTCCTTCCAGAAGG-TAAAACTGACTTCTTCAAAGCCCCATAAAT 1467
||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct 1436 ACCTCAAGCCGAGCAGTCCTTCCAGAAGGGTAAC-CTGGCTTCTTCAAAGCCCCATAAAT 1494
Query 1468 TTATTGGGCCCAAACTACGAGCCGAGCAGGCCCTC-CAAGAGGATAACCTGCTTTCTTCC 1526
||||| ||||||||| ||||||||||||||||| | | ||||||||||||||||||||||
Sbjct 1495 TTATTAGGCCCAAACCACGAGCCGAGCAGGCCC-CACTAGAGGATAACCTGCTTTCTTCC 1553
Query 1527 AAAGTTGAAAAGGCGCCTTTAAAGCCACATGCGAAAGTCATTATATCTGTCAACCTTGGT 1586
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1554 AAAGTTGAAAAGGCGCCTTTAAGGCCACATGCGAAAGTCAGTATATCTGTCAACCTTGGT 1613
Query 1587 GCCAAAAGGGTCTCTCCTTCTGTCAATGGTAGACTTTCTTTCCACCAAGATGAGAACATA 1646
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1614 GCCAAAAGGGTCTCTCCT---GTCAATGGTAGACTTTCTTTCCACCAAGATGAGAACATA 1670
Query 1647 GCTCCAAAGGCGAACAAAGAGAATAGTGTATCAGTTTTGCCGACTAGAGTTAAGTCTGGC 1706
||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1671 GCTCCAAAGGCAAACAAAGAGAATAGTGTATCAGTTTTGCCGACTAAAGTTAACTCTGGT 1730
Query 1707 ACGGAGAGAAAGTTTGGTACTGAAAATGGTGGCAATGGAGTTAAAGAAAACGGCAGTGCA 1766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1731 ACGGAGAGAAAGTTTGGTACTGAAAATGGTGGCAATGGAGTTAAAGAAAACGGCAGTGCA 1790
Query 1767 CCAGGTAGTAGTAAACATAAAGTGACATTGCATCCCCATGAGCGTAGTAATGGCTCCAGC 1826
|||||||||||||| ||||||||| |||||||||| |||||||| |||||||||||||||
Sbjct 1791 CCAGGTAGTAGTAATCATAAAGTGGCATTGCATCCTCATGAGCGGAGTAATGGCTCCAGC 1850
Query 1827 AATGGGGGTGATCACCACAAGGATAACTTACATCCATGTGGAAGTAATGGCTCACAAAAT 1886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 AATGGGGGTGATCACCACAAGGATAACTTACATCCATGTGGAAGTAATGGCTCACAAAAT 1910
Query 1887 GGAACTGTTCACCAGGAAATTGAGAGAAACGGTGTTAGTACCACCCAATCCAAAGGCTTG 1946
||||||| ||||| |||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1911 GGAACTGCTCACCCCGAAACTGAGAGGAACGGTGTTAGTACCACCCAATCCAAAGGCTTG 1970
Query 1947 TGTTCTTCAACAAATGAAGACCCCTGCATTTTGCTTAGAAAAGACGAATCATCTCGGAAT 2006
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1971 TGTTCTTCAACAAAGGAAGACCCCTGCATTTTGCTGAGAAAAGACGAATCATCTCGGAAT 2030
Query 2007 GAACTTGAAGCAATCAAAGAGAGCCTGAAGAAAGATGCGTTGTCACATCTACGGTCATGC 2066
|||||||||||||| |||||||||||||| ||||| ||| ||||||||||||| ||||||
Sbjct 2031 GAACTTGAAGCAATAAAAGAGAGCCTGAAAAAAGACGCGCTGTCACATCTACGTTCATGC 2090
Query 2067 GGATGGTATGACAAGGTACACATCTCTATGCGGGCCAAGAAGAGATTGCGTACAGAGCAA 2126
||||||||||||||||| | |||||| |||| |||||||||||||||||||||||||||
Sbjct 2091 GGATGGTATGACAAGGTTCTCATCTCCATGCATGCCAAGAAGAGATTGCGTACAGAGCAA 2150
Query 2127 TCAGGAGGAGAAGATGGT-GACGACTTGAAGAGGTTGTTGATTGAAGATGTGAAATCAAG 2185
||||| |||||||||||| | ||||||||| ||| ||||||||||||||||||||||||
Sbjct 2151 TCAGGTGGAGAAGATGGTAG-CGACTTGAAAAGGAGGTTGATTGAAGATGTGAAATCAAG 2209
Query 2186 TTTAAAATCGCAGATTCCAGAGGAATTGAAAGCAGATCTGGTAAACCGTATATGGGAAAT 2245
||| ||||| |||||||||||||| |||||||||||||||||||| ||||| ||||| ||
Sbjct 2210 TTTGAAATCACAGATTCCAGAGGAGTTGAAAGCAGATCTGGTAAATCGTATCTGGGAGAT 2269
Query 2246 TAGCAAGAAGAAGTACTCGTGAACCGTTGTTTTT-GCTTAAACCAAAATGACTCAAATCT 2304
||||||||||||||||||||||||| |||||||| |||| ||| |||||||||| |||||
Sbjct 2270 TAGCAAGAAGAAGTACTCGTGAACCATTGTTTTTTGCTTCAACAAAAATGACTCGAATCT 2329
Query 2305 CTGGGTGCTTGAAGCCTCTAC 2325
|||| || ||||||||||||
Sbjct 2330 CTGGAAGCATGAAGCCTCTAC 2350
Score = 348 bits (188), Expect = 2e-94
Identities = 237/259 (92%), Gaps = 9/259 (3%)
Strand=Plus/Plus
Query 2344 TTATACAGAGAGAGCGGATCAACATTTTTTCCTGCCACTGTGA-G--GGTGAAGTGAGtt 2400
|||||||||| ||||||||| | |||||||||||| ||||||| | |||||||||||||
Sbjct 2419 TTATACAGAGTGAGCGGATCGAGATTTTTTCCTGCGACTGTGATGATGGTGAAGTGAGTT 2478
Query 2401 tttttCTTTTCTATTATTATTACATTTTTGG--GAGAGTAAAAGTAATTACCGGaaaaag 2458
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2479 TTTTTCTTTTCTATTATTATTACATTTTTGGAAGAGAGTAAAAGTAATTACCGGAAAAAA 2538
Query 2459 aaa-aaaagaaaaaCAGATCTCATTCTGTATAATACAAAGCCTTCTTATTATTTTGCCTC 2517
||| |||| |||||||||||||||||||||||||| || |||||||| || |||||||||
Sbjct 2539 AAAGAAAAAAAAAACAGATCTCATTCTGTATAATATAACGCCTTCTTGTT-TTTTGCCTC 2597
Query 2518 TTATCGATGAAGCTTTACACAAATATACAAAGTCCTTTTGGAAATTAATAGTGTAAGAAC 2577
|||||||||||||||||||||||||||||| ||||| | ||||||| |||| |||||||
Sbjct 2598 TTATCGATGAAGCTTTACACAAATATACAA-GTCCTGT-GGAAATTTTTAGTATAAGAAC 2655
Query 2578 GTTCTTGAATTTGTGTATT 2596
|||||||||||||||||||
Sbjct 2656 GTTCTTGAATTTGTGTATT 2674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128878876567
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5