BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478894 Length=2764 Score E Sequences producing significant alignments: (Bits) Value AT3G14810.1 | Symbols: MSL5 | mechanosensitive channel of small... 4305 0.0 > AT3G14810.1 | Symbols: MSL5 | mechanosensitive channel of small conductance-like 5 | chr3:4971223-4974354 REVERSE LENGTH=2784 Length=2784 Score = 4305 bits (2331), Expect = 0.0 Identities = 2614/2750 (95%), Gaps = 22/2750 (1%) Strand=Plus/Plus Query 25 AAAGAAACCTCTCTCCATTTTTTCCGGAAATAATTGCTCCTTTTAGGTAAGAAAATCTAG 84 ||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 47 AAAAAAACCTCTCTCCATTTTTTCCGGAAATAATTACTTCTTTTAGGTAAGAAAATCTAG 106 Query 85 TCTTTTGCCTTTGTGAGATCTCTAAC-GAATCATGGCGGCCGTTGATTCAACTGATCGGC 143 ||| |||||||||||||||||||||| ||||||||||||| || |||||||||||||||| Sbjct 107 TCTCTTGCCTTTGTGAGATCTCTAACGGAATCATGGCGGCTGTCGATTCAACTGATCGGC 166 Query 144 GGGACTTCATAGTGAACATCAACGGCCAAGAGAGTGGAGCCGTCGGTGCTACAGGGTCAA 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 167 GGGACTTCATAGTGAACATCAACGGCCAAGAGAGTGGAGCCGTCGGTGCTACAGGGTCAA 226 Query 204 GCAGCAATGCTGAGGGAGGTAATATTTGGAAAGAATCAAGCTATGATTTTTGGGATGGTG 263 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 227 GCAGCAATGCTGAGGGAGGTAATATTTGGAAAGAGTCAAGCTATGACTTTTGGGATGGTG 286 Query 264 AAAAGGGTAAGAATGATAAGAAAGGAGCCGGCGACGACGATGAAGACGGCGGCAGTTTCC 323 |||||||||||||||||||||||||| | |||||| || ||||||||||||||||||| Sbjct 287 AAAAGGGTAAGAATGATAAGAAAGGA---GACGACGAAGACGAAGACGGCGGCAGTTTCC 343 Query 324 ATTTCACGCAGCCGAGG-GAGCGGAGGCA-TAGTTCAGCTGAGTTAT-TAGATCCGCCGA 380 |||||| |||| || || ||||||||||| | | ||||||||||||| | ||||||||| Sbjct 344 ATTTCAGGCAG-CGGGGAGAGCGGAGGCATTCG-TCAGCTGAGTTATCT-GATCCGCCGT 400 Query 381 CGAAGCTAATTCGTCAGTTTCTTCACAAGCAGAGAGCTTCAGGAGACGAGATCTCTCTAG 440 ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 401 CGAAGCTAATTGGTCAGTTTCTTCACAAGCAGAGAGCTTCAGGAGATGAGATCTCTTTAG 460 Query 441 ATGTTGAGCTTAACATGGCAGAGCTACAGAGCAACACGCCGCCACGTGCTACAACTGCAA 500 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| | Sbjct 461 ATGTTGAGCTTAACATGGCAGAGCTACAGAGCAACACGCCGCCACGTCCTGCAACTGCTA 520 Query 501 GCAACACGCCGCGACGTGGCTTAACGACGATTTCAGAGTCTTCTTCTCC-GTTCACGACT 559 |||||||||||||||||||||||||||||||||| || ||||||||||| ||| | |||| Sbjct 521 GCAACACGCCGCGACGTGGCTTAACGACGATTTCTGAATCTTCTTCTCCGGTT-AAGACT 579 Query 560 AAAGTTCAAGCTGACGCAGTAAGACGGAGGCAGAGCAGAATATCTCTCGGTGGAAGTAGC 619 |||||| |||| |||||||||||||||||||||| ||||| ||| || |||||||||||| Sbjct 580 AAAGTTAAAGCAGACGCAGTAAGACGGAGGCAGAACAGAACATCGCTAGGTGGAAGTAGC 639 Query 620 GACGAAGAAGGTCGAAACAGAGACGAAGCAGAGGTTGTGAAGGT-TAGTTCGAATAAACC 678 ||||| |||||||||||||||||||||||||||||| |||| || | ||||||| ||||| Sbjct 640 GACGAGGAAGGTCGAAACAGAGACGAAGCAGAGGTTTTGAA-GTGTGGTTCGAAGAAACC 698 Query 679 GATGTTGAGCAGGAACAAGACCAAATCGAGATTGCAGGATCCTCCTACACCGACACATCC 738 ||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 699 GATGTTGAGTAGGAACAAGACCAAATCAAGATTGCAGGATCCTCCAACACCGACACATCC 758 Query 739 AGCGATTGACAAAACAGAGATGAAGTCTGGTCGGAGATCCGGGATTTTTAAATCTGGGTT 798 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 759 AGCGATTGACAAGACAGAGATGAAGTCTGGTCGGAGATCCGGGATTTTTAAATCTGGGTT 818 Query 799 TCTTGGGAAAAGCCCTAAAGCGGGTACTCCAGGTCGGAATGGGATTGAGGAAGAAGAAGA 858 |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 819 TCTTGGGAAAAGCCCTAAAGCGGGTACTCCGGGTCGGAATGGGTTTGAGGAAGAAGAAGA 878 Query 859 GGAAGATCCGTTTCTAAACGAGGATTTACCGGAGGAATTCAAAAGGGATAAACTTAGCAT 918 ||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||| | Sbjct 879 GGAGGATCCGTTTCTAGACGAGGATTTACCGGAGGAATTCAAAAGGGACAAACTTAGCTT 938 Query 919 CTGGGTTTTTCTTGAATGGATAAGTCTAGTTCTGATAGTCACCAGTTTGGTCTGTAGCTT 978 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 939 CTGGGTTTTCCTTGAATGGATAAGTCTAGTTCTGATAGTCACAAGTTTGGTCTGTAGCTT 998 Query 979 AACCATACATAACTTGCAACGCAAGACATGGTGGAAGCTGGATTTGTGGAAATGGGAAGT 1038 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 999 AACCATACATAACTTGCAACGCAAGACATGGTGGAAGCTGGATTTGTGGAAATGGGAAGT 1058 Query 1039 GACGGTTTTGGTGTTGATATGTGGGAGATTAGTCTCGAGTTGGATAGTGAGAATCATTGT 1098 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1059 GACTGTTTTGGTGTTGATATGTGGGAGATTAGTCTCGAGTTGGATAGTGAGAATCATTGT 1118 Query 1099 CTTCTTGGTCGAGAAAAACTTC-CTTTGGAGGAAAAGGGTTTTGTATTTCGTCTACGGAG 1157 |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 1119 CTTCTTGGTCGAGAAAAACTTCAC-TTGGAGGAAAAGGGTTTTGTATTTCGTCTACGGAG 1177 Query 1158 TTCGAAAATCTGTTCAAAACTGCTTGTGGTTAGGGCTAGTGTTGCTTGCGTGGCATTTCT 1217 | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1178 TGAGAAAATCTGTTCAAAACTGCTTGTGGTTAGGGCTAGTGTTGCTCGCGTGGCATTTCT 1237 Query 1218 TGTTCGATAAGAAAGTCAAAAGAGAGACTCGGAGCACTGCGCTTCGGTATGTGACGAGAG 1277 ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct 1238 TGTTCGATAAGAAAGTCGAAAGAGAGACTCGGAGCACTGCTCTTCGGTATGTGACGAGAG 1297 Query 1278 TTTTGGTATGTTTGCTTGTGGCTCTTATCATTTGGCTGGTTAAAACAATTCTGGTTAAAG 1337 | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1298 TGTTGGTATGTTTGCTTGTGGCTCTTATCATTTGGTTGGTTAAAACAATTCTGGTTAAAG 1357 Query 1338 TTTTGGCTTCATCGTTCCACATGAGCACTTACTTTGATCGGATTCAGGAGTCGTTGTTCA 1397 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1358 TTTTGGCTTCATCGTTCCACATGAGCACTTACTTTGATCGGATTCAGGAGTCGTTGTTCA 1417 Query 1398 CTCAATATGTGATTGAAGTTCTCTCTGGTCCTCCTTTGATGGAGATTCAGAGAATGGAGG 1457 ||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 1418 CTCAATACGTGATTGAAACTCTCTCCGGTCCTCCTTTGATGGAGATTCAGAGAATGGAGG 1477 Query 1458 AAGAAGAGCAACAAGTAGCAGAAGATGTTAAGAGCTTAGAGAAATTAGCTGGAGCTAAGC 1517 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1478 AAGAAGAGCAACAAGTAGCAGAAGATGTTAAGAGCTTAGAGAAATTAGCCGGAGCTAAGC 1537 Query 1518 TGCCTCCAGCTCTAAAGGCGACCGTTAAAAGTTTTATGAAAGTCGGGAAACGTCGGGGAA 1577 |||||||||||||||| |||||||| || ||||||||||||||||||||| ||| |||| Sbjct 1538 TGCCTCCAGCTCTAAAAGCGACCGTCAAGAGTTTTATGAAAGTCGGGAAAAGTCCGGGAC 1597 Query 1578 TGACTCGGATTGGTTCTAAAAAAGGAGAAGATGGCGAAGGGATTAGGATTGATCATTTGC 1637 ||| ||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| Sbjct 1598 TGAATCGGATTGGTTCTAAGAGAGGAGAAGATGGCGAAGGGATTAGGATTGATCAGTTGA 1657 Query 1638 AGAGAATGAACACAGAGAATGTATCTGCTTGGAACATGAAGAGATTGATGAATATAGTAC 1697 |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct 1658 AGAGAATGAACACAAAGAATGTGTCTGCTTGGAACATGAAGAGATTGATGAATATAATAC 1717 Query 1698 TAAAAGGCGCTATTTCTACTTTGGATCAAAATATACAGGACACAT-CTCAGGAGGATGAG 1756 |||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||| Sbjct 1718 TAAAAGGCGCTATTTCTACTTTGGATCAAAATATGCAGGACAC-TACTCAGGAGGATGAG 1776 Query 1757 AACGCTACGCAGATAAGAAGCGAGTGCGAAGCTAAATGTGCAGCTAGGAAGATTTTCCAC 1816 |||||||||| ||||||||||||| |||||||||||| ||||||||||||||||| ||| Sbjct 1777 GACGCTACGCATATAAGAAGCGAGTACGAAGCTAAATGCGCAGCTAGGAAGATTTTTCAC 1836 Query 1817 AATGTCACCGAGCCAGGTTCCAGGTACATATATTTGGAAGACTTCTTGCGTTTTCTATGT 1876 || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1837 AACGTCACCGAGCCAGGTTCTAGGTACATATATTTGGAAGACTTCTTGCGTTTTCTATGT 1896 Query 1877 GAAGAGGAGTCTGAAAGAGCCATGGCTCTCTTTGAAGGAGCTTCAGAGAGCAATAAGATC 1936 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1897 GAAGAGGAGGCTGAAAGAGCCATGGCTCTCTTTGAAGGAGCTTCAGAGAGCGATAAGATC 1956 Query 1937 AGCAAATCTTGCCTCAAGAATTGGGTGGTTAAGGCGTTTAGAGAAAGGAGGGCTCTGGCT 1996 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1957 AGCAAGTCTTGCCTCAAGAATTGGGTGGTTAAGGCGTTTAGAGAAAGGAGAGCTCTGGCT 2016 Query 1997 TTGACCTTAAACGATACAAAAACAGCAGT-GACCAGGCTTCACCGTATAATCAACGTGGT 2055 ||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||| Sbjct 2017 TTGACCTTAAACGATACAAAAACAGCAGTGGA-CAGACTTCACCGTATAATCAACGTGGT 2075 Query 2056 GATTGGCATTATAGTCATAGTCATCTGGCTCCTTATACTGGGAATCGCCACAACCAGATT 2115 |||||||||||| ||||| |||||||||| |||||||| |||||||||||||||||||| Sbjct 2076 AATTGGCATTATAATCATAATCATCTGGCTTCTTATACTAGGAATCGCCACAACCAGATT 2135 Query 2116 CTTGCTAGTCTTAAGCTCTCAGCTCATTTTAGTAGCCTTTGTATTTGGAAACTCCTGCAA 2175 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 2136 CTTGCTAGTCTTAAGCTCTCAGCTCCTTCTAGTAGCCTTTGTATTTGGAAACTCCTGCAA 2195 Query 2176 AACCATCTTCGAAGCCATCATTTTCCTTTTTGTTATGCACCCATTTGATGTCGGTGACCG 2235 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2196 AACCATCTTCGAAGCCATCATTTTCCTTTTTGTTATGCACCCATTTGATGTCGGTGACCG 2255 Query 2236 ATGTGAAATCGACGGTGTTCAGTTGGTTGTGGAGGAGATGAACATATTAACGACTGTTTT 2295 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 2256 ATGTGAAATCGACGGTGTTCAGTTGGTAGTGGAGGAGATGAACATATTGACGACTGTTTT 2315 Query 2296 CTTGCGAGATGATAATCAAAAGATCACATACCCGAACAGTGTCCTCGGCACAAAACCTAT 2355 ||||||| |||||||||||||||||| ||| ||||| ||||||||||||||||||||||| Sbjct 2316 CTTGCGATATGATAATCAAAAGATCATATATCCGAATAGTGTCCTCGGCACAAAACCTAT 2375 Query 2356 AGCTAACTATTACCGAAGTCCCGACATGGGAGACGCGGTTGAATTCTGTGTTCATATAGC 2415 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2376 AGCTAACTATTACCGAAGTCCCGATATGGGAGACGCGGTTGAATTCTGTGTTCATATAGC 2435 Query 2416 AACTCCTCCTGAAAAGATCACTGCCATTAAACAAAGAATACTAAGTTATGTAGACAACAA 2475 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 2436 AACTCCTCCTGAAAAGATCACTGCCATTAAACAGAGAATACTAAGTTACGTAGACAACAA 2495 Query 2476 GAAGGATTACTGGTATCCTGCACCTATGATTGTGTTCCTAAGCATGGATGACTTGAATAG 2535 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2496 GAAGGATTATTGGTATCCTGCACCTATGATTGTGTTCCTAAGCATGGATGACTTGAATAG 2555 Query 2536 TGTGAAGATAGCCGTGTGGTTGACACATAGAATGAATCATCAAGACATGGGAGAGAGGTA 2595 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2556 TGTGAAGATAGCGGTGTGGTTGACACATAGAATGAATCATCAAGACATGGGAGAGAGGTA 2615 Query 2596 TATAAGAAGAGGTCTATTACTAGAGGAAGTGGCAAAAACTTGTAGAGAGCTCGATATCGA 2655 |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct 2616 TATAAGAAGAGGTCTATTACTAGAGGAAGTGGGAAAAACTTGTAGAGAGCTAGATATCGA 2675 Query 2656 GTATCGCTTATATCCTCTTAGCATTAATGTTCGAAGTCTCCCTCCTACGGCTAATC-AAC 2714 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 2676 GTATCGCTTATATCCTCTTAACATTAATGTTCGAAGTCTCCCTCCTACGGCTAATCCAAC 2735 Query 2715 CGTCTCCAGGCCGTGTTCCTCCTTCATGGATGCAACAACACGGTTCTTGA 2764 ||| ||| ||| |||||||||||||||||||||||| |||| ||||| Sbjct 2736 T-TCTTCAGACCGCATTCCTCCTTCATGGATGCAACAACGCGGTCCTTGA 2784 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 137306922991 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5