BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478897 Length=1743 Score E Sequences producing significant alignments: (Bits) Value AT3G14830.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2460 0.0 AT1G53450.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 837 0.0 > AT3G14830.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53450.2); Has 73 Blast hits to 73 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:4982943-4985857 FORWARD LENGTH=1941 Length=1941 Score = 2460 bits (1332), Expect = 0.0 Identities = 1513/1598 (95%), Gaps = 21/1598 (1%) Strand=Plus/Plus Query 59 CGTCAAACCCTAATTTTGACTTCAAGGTGTG-TAATCCCAAATCCGTTTCATAGCTCGAT 117 ||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||| Sbjct 189 CGTCAAACCCTAATTTTGACTTCCGGGTG-GATAATCCCAAATCCGTTTCATAGCTCGAT 247 Query 118 TTCACTCATAAATTTCCGAG----C----TTTTGATTCGCATGAGGATTTGAATAGGCAA 169 |||||| ||||||||||||| | ||||||||||||||||||||||||| | | | Sbjct 248 TTCACTGATAAATTTCCGAGCTTTCGGTGTTTTGATTCGCATGAGGATTTGAATTGACTA 307 Query 170 GGAAAGATAAAGATGTC-AGTGGAGAGATCTTTAGAAGCTTGGGAAGAGGTTCAACGACA 228 ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 308 GGAAAGATAAAGATGTCTA-TGGAGAGATCTTTAGAAGCTTGGGAAGAGGTTCAACGACA 366 Query 229 TGGGCAAGATTTAGCTGATCGACTTGCTCAGGGATTTACTGGTTTGATTCATATAAACCC 288 ||| ||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 367 TGGACAAGACTTAGCTGATCGACTTGCTCAAGGATTTACGGGTTTGATTCATATAAACCC 426 Query 289 ACCTTCGTTTCCATGGCCGCCTAATCATAATCA--TT-ACAAGGCGAAACTATTCGATCT 345 ||||||||||||||||||||| ||||| |||| || ||||||||||||| |||||||| Sbjct 427 ACCTTCGTTTCCATGGCCGCCGAATCACCATCATCTTCACAAGGCGAAACTGTTCGATCT 486 Query 346 CGAGTTCCCTAGTCAACATTTCAGTGTTATTAGGGATTCTAGGTTTAGTATCAACCAACC 405 ||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 487 CGAGTTCCCAACTCAACATTTCAGTGTTATTAAGGATTCTAGGTTTAGTATCAACCAACC 546 Query 406 CATCAACGGTGTCTCAGCGATTCTTGATATTGGGAATAAGATAGGTCAAGCTGGTGTTGA 465 |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 547 AATCAACGGTGTCACAGCGATTCTCGATATTGGGAATAAGATAGGTCAAGCTGGTGTTGA 606 Query 466 TTTTGGTGC-GGGTTTGAATGTGATGGTCCAACAATTCTTTAGGAGGTTGCCTATTCCGT 524 |||||||| ||| |||||||||||||||||||| ||||| |||||||||||||| |||| Sbjct 607 CTTTGGTGCTGGG-TTGAATGTGATGGTCCAACAGTTCTTCAGGAGGTTGCCTATACCGT 665 Query 525 TCTTGCACGAGGATAATAACAAGCTTGTTGTCTCTGTTGATGGTGATAAGAGTACAAGGA 584 |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 666 TCTTACACGAGGATAATAACAAGCTTGTTGTCTCTGTGGATGGTGATAAGAGTACAAGGA 725 Query 585 GCCATAGGGCTTATGCGATCACAAAAGGTGATTTGGGATTGGCTGCAGAACGGTTGAGGG 644 ||||||| ||||||| |||||||||||| ||||||||| ||||| ||||||||||||||| Sbjct 726 GCCATAGAGCTTATGTGATCACAAAAGGGGATTTGGGAATGGCTACAGAACGGTTGAGGG 785 Query 645 ACTCAGGGTTTTCTAAGACAGATGATACTGCTTCTGTTACTATGTCTGAGGAGGAAGTTG 704 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 786 ACTCAGGGTTTTCTAAGACAGATGATACTGCTTCTGTTACTATGTCTGAGGAGGAAGTTG 845 Query 705 CAGATTCCTATCTAAGAACTGCTGGATTGCTTGGAAGATCAAAGGGAACAATTGATATGT 764 ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| || Sbjct 846 CAGATTCCTATCTTAGAGCTGCTGGATTGCTTGGAAGATCAAAGGGAACAATTGATACGT 905 Query 765 CATCAAGTTATGACAGTAGGACAAATGGTATGGAACATTCATTGGCAGCCAGAGGAGACC 824 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 906 CATCAAGTTATGACAGTAGGACAAATGGTATGGAACATTCATTGGCAGCCAGAGGAGATC 965 Query 825 TCTGGAGGGTAGAAGCTTCACATTCGAGTTCTACTGCAAGCGATGGAAATTCGTCTCTCT 884 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 966 TCTGGAGGGTAGAAGCTTCACATTCGAGTTCTACTGCAAGCGATGGAAATTCGTCTCTCT 1025 Query 885 TTCTTCTCCAGCTTGGACCACTTCTCTTTCTACGCGATTCAACGCTTCTTTTACCGTTAC 944 |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1026 TTCTTCTCCAACTTGGACCACTTCTCTTTCTACGCGATTCAACTCTTCTTTTACCGTTAC 1085 Query 945 ACTTATCAAAACAACACTTGCTCTGGTATGGATATGATAGGAAGAAAGGTATGCATTCAC 1004 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1086 ACTTATCAAAACAGCACTTGCTCTGGTATGGATATGATAGGAAGAAAGGTATGCATTCAC 1145 Query 1005 TCTGCCCAGCTTTATGGTCAAAGCATCGAAGGTGGCTTATGATGTCAATGCTCTCTCTCA 1064 |||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1146 TCTGTCCAGCTATATGGTCAAAGCATCGGAGGTGGCTTATGATGTCAATGCTCTCTCTCA 1205 Query 1065 ATCCTTTAGCTTGCTCATTTATGGATTTGCAATTTCCAAACGGGCAATTGACATATGTAT 1124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1206 ATCCTTTAGCTTGCTCATTTATGGATTTGCAATTTCCAAACGGGCAATTGACATATGTAT 1265 Query 1125 CTGGCGAAGGACTGACGACAAGTGCTTTTGTGCCTTTTTGTGGCGGTCTTCTTCAAGCAC 1184 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1266 CTGGCGAAGGACTGACGACAAGTGCTTTTGTGCCTTTTTGTGGTGGTCTTCTTCAAGCAC 1325 Query 1185 AGGGTCAATATCCAGGCGACATGAGATTTAGTTACTCTTGTAAGAATAAATGTGGAACCC 1244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1326 AGGGTCAATATCCAGGCGACATGAGATTTAGTTACTCTTGTAAGAATAAATGTGGAACCC 1385 Query 1245 TAATCACACCAATGGTACATTGGCCTGACAAATCATTTGCGTTGGATCTTTCTCAACCCT 1304 ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| Sbjct 1386 GAATCACACCAATGGTACATTGGCCTGATAAATCATTTGGGTTGGATCTTTCTCAACCCT 1445 Query 1305 TGGCTTGGCGTAGAGTC-GGACTACTGATGAAACCAACAATTCAAGTCAGTGTATGTCCC 1363 |||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||| Sbjct 1446 TGGCTTGGCGTAGA-TCCGGACTACTGATGAAACCGACAATTCAAGTCAGTGTATGTCCC 1504 Query 1364 ACATTTGGTGGAAGCAATCCGGGG-TTGAAAGCAGAAGTTATTCACTCGTTGAGCGATGA 1422 ||||| |||||||||||||| ||| || || ||||||||||||||||||||||||||||| Sbjct 1505 ACATTCGGTGGAAGCAATCCCGGGATT-AAGGCAGAAGTTATTCACTCGTTGAGCGATGA 1563 Query 1423 CTTGAATCTCATATGTGGCTATGCACTCAATGCACATCCTTCAGCATTTGCCTCTGTATC 1482 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 1564 CTTGAATCTGATATGTGGCTACGCACTCAATGCACATCCTTCAGCATTTGCCTCTGTAGC 1623 Query 1483 TTTTGGACGGTCGAAATGGAATGGGAACATTGGACGCACGGGAATAGTTGTTAGAGCTGA 1542 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1624 TTTTGGTCGGTCGAAATGGAATGGAAACATTGGACGCACGGGAATAGTTGTTAGAGCTGA 1683 Query 1543 TACTCCTCTTGCAAGTATCGGCCAGCCTTCCTTCTCTGTCCAGTTTAATAACGCTATCGA 1602 |||||| ||||||||||| ||||||||||| |||||| ||||| ||||||||||| |||| Sbjct 1684 TACTCCACTTGCAAGTATTGGCCAGCCTTCTTTCTCTATCCAGCTTAATAACGCTTTCGA 1743 Query 1603 GTTCTGAACCTTTCCAATATAAGATAGaaaaaaaaaaa 1640 |||||||| ||||||||||||| |||| | |||||||| Sbjct 1744 GTTCTGAATCTTTCCAATATAACATAGGAGAAAAAAAA 1781 Score = 60.2 bits (32), Expect = 6e-08 Identities = 34/35 (97%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 1 CAAAGTGGCGGTAACTGGTAAGGTTAATCTGTGTG 35 |||||||||||||||||||||||||||||| |||| Sbjct 25 CAAAGTGGCGGTAACTGGTAAGGTTAATCTCTGTG 59 > AT1G53450.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14830.2); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19951235-19954115 REVERSE LENGTH=2150 Length=2150 Score = 837 bits (453), Expect = 0.0 Identities = 815/986 (83%), Gaps = 40/986 (4%) Strand=Plus/Plus Query 645 ACTCAGGGTTTTCTAAGACAGATGA-TACTGCTTCTGTTACTATGTCTGAGGAGGAAGTT 703 |||||| |||||||||||||||| | | || | |||| |||| ||| ||||||| ||||| Sbjct 674 ACTCAGCGTTTTCTAAGACAGAT-ACTGCTTCCTCTGGTACTGTGTATGAGGAGAAAGTT 732 Query 704 GCAG-ATTCCTATCTAAGAACTGCTGGATTGC-TTGGAAGATCAAAGGGAACAATTGATA 761 ||| ||| | || |||| ||| |||||| | | || ||| |||||||||| |||| Sbjct 733 ACAGAATT-CGATTTAAGGACTATTGGATTACATAGG-AGAGCAAAGGGAACGGTTGAGC 790 Query 762 TGTCATCAAGTTATGACAGTAGGACAAATGGTATGGAACATTCATTGGCAGCCAGAGGAG 821 | |||||||||||||| | |||||||| | ||||||||||||| || |||||||| |||| Sbjct 791 TATCATCAAGTTATGAAACTAGGACAAGTAGTATGGAACATTCGTTAGCAGCCAGGGGAG 850 Query 822 ACCTCTGGAGGGTAGAAGCTTC-ACATTCGAGTTCTACTGCAAGCGATGGA-AATTCGTC 879 | || ||||| ||||||||||| || ||| | ||| ||| || ||| || | ||||| Sbjct 851 ATCTTTGGAGAGTAGAAGCTTCTAC-TTCAAATTCCCCTGTGAGAGAT-GATAGCTCGTC 908 Query 880 TCTCTTTCTTCTCCAGCTTGGACCACT-TCTCTTTCTACGCGATTCAACGCTTCTTTTAC 938 ||||||||| |||||||||||||| || | | ||||| ||||||||||| |||||||| | Sbjct 909 TCTCTTTCTACTCCAGCTTGGACCTCTGT-TATTTCTGCGCGATTCAACTCTTCTTTTGC 967 Query 939 C-GTTACACTTATCAAAACAACACTTGCTCTGGTATGGATATGATAGGAAGAAAGGTATG 997 | ||| || |||||||| ||||||||||||||||| ||||||||||| |||||||||||| Sbjct 968 CTGTT-CATTTATCAAAGCAACACTTGCTCTGGTACGGATATGATAGAAAGAAAGGTATG 1026 Query 998 CATTCACTCTGCCCAGCTTTATGGTCAAAGCATCGAAGGTGGCTTATGATGTCAATGCTC 1057 |||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1027 CATTCACTGTGTCCAGCTTTGTGGTCAAAGCATCGAAGGTGGCTTATGATGTCAATGCTC 1086 Query 1058 T-CTCTCAATCCTTTAGCTTGCTCATTTATGGATTTGCAATTTCCAAACGGGCAATTGAC 1116 | | ||||||||||||| |||||||||| | || |||||||| ||||| || ||||| || Sbjct 1087 TGC-CTCAATCCTTTAGATTGCTCATTTGTAGACTTGCAATTCCCAAATGGACAATTAAC 1145 Query 1117 ATATGTATCTGGCGAAGGACTGACGACAAGTG-CTTTTGTGCCTTTTTGTGGCGGTCTTC 1175 |||||| ||||| || ||| |||||||||||| |||| || ||||| || |||||||| | Sbjct 1146 ATATGTTTCTGGTGAGGGATTGACGACAAGTGTCTTT-GTTCCTTTATGCGGCGGTCTCC 1204 Query 1176 TTCAAGCACAGGGTCAATATCCAGGCGACATGAGATTTAGTTACTCTTGTAAGAATAAAT 1235 ||||||| || |||||||||||||| || |||||||| |||| |||||| |||| |||| Sbjct 1205 TTCAAGCGCAAGGTCAATATCCAGGAGATATGAGATTCAGTTTCTCTTGCAAGAGTAAAC 1264 Query 1236 -GTGGAACCCTAATCACACCAATGGTACATTGGCCTGACAAATCATTTGCGTTGGATCTT 1294 | ||||| | ||||||||| ||| || | ||||||||||||||||| || |||| | || Sbjct 1265 AG-GGAACACGAATCACACCGATGATAAACTGGCCTGACAAATCATTGGCATTGGGTGTT 1323 Query 1295 TCTCAACCCTTGGCTTGGCGTAGAGTC-GGACT-ACTGATGAAACCAACAATTCAAGTCA 1352 |||||| |||||||||||||||| ||| || | | || ||||||| |||||||| | | Sbjct 1324 TCTCAAGCCTTGGCTTGGCGTAG-GTCCGGTGTCA-TGTTGAAACCTGCAATTCAACTTA 1381 Query 1353 GTGTATG-TCCCACATTTGGTGGAAGCAATCCGGGG-TTGAAAGCAGAAGTTATTCACTC 1410 |||| || || |||||||||||||||||||| ||| || ||| | ||||||||||| || Sbjct 1382 GTGTGTGCTCT-ACATTTGGTGGAAGCAATCCCGGGATTAAAACC-GAAGTTATTCAGTC 1439 Query 1411 GTTGAGCGATGACT-TGAATCTCATATGTGGCTATGCACTCA-ATGCACATCCTTCAGCA 1468 ||||| ||| | | | ||| | |||||||||| |||| ||| | || ||||||||| || Sbjct 1440 GTTGAATGATAA-TATCAATATGATATGTGGCTGTGCATTCACA-GCTCATCCTTCAACA 1497 Query 1469 TTTGCCTCTGTATCTTTTGGACGGTCGAAATGGAATGGGAACATTGGACGCACGGGAATA 1528 ||||| ||||| || ||||| ||||| || |||||||||||||||||||| || |||||| Sbjct 1498 TTTGCATCTGTTTCCTTTGGTCGGTCTAAGTGGAATGGGAACATTGGACGAACAGGAATA 1557 Query 1529 GTTGTTAGAGCTGATACTCCTCTTGCAA--GTATCGGC-C-AGCCTTCCTTCTCTGTCCA 1584 |||||||||||||||||||||||| ||| || | | | | | ||||| ||||| | || Sbjct 1558 GTTGTTAGAGCTGATACTCCTCTTCCAAACGT-T-G-CTCGA-CCTTCTTTCTCCATTCA 1613 Query 1585 GTTTAATAACGCTATCGAGTTCTGAA 1610 | | || || ||| |||||||||||| Sbjct 1614 GATCAACAATGCTTTCGAGTTCTGAA 1639 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86194335765 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5