BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478940
Length=2300
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15095.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 3221 0.0
> AT3G15095.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 9762 Blast hits
to 6439 proteins in 764 species: Archae - 77; Bacteria - 1339;
Metazoa - 3211; Fungi - 718; Plants - 437; Viruses - 131;
Other Eukaryotes - 3849 (source: NCBI BLink). | chr3:5081780-5084081
FORWARD LENGTH=2302
Length=2302
Score = 3221 bits (1744), Expect = 0.0
Identities = 2159/2344 (92%), Gaps = 90/2344 (4%)
Strand=Plus/Plus
Query 1 GTGATTAGTCAAAGATGATTACATAGATTTAGGAAGAAGGAATCTCTCTTACCCTAATC- 59
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1 GTGATCAGTCAAAGATGATTACATAGATTTAGGAAGAAGGAA--TCTCTTACCCTAA-CT 57
Query 60 AGATCCAGGGGTATTTTAGTAAATTATCATAGGGACCCCCCTAAGTCTCTCTCGATTCCG 119
||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||
Sbjct 58 AGATCCAGGGGTATTTTAGTAAATTATCATAGGTA--CCCCTAAAAGTCTCTCGATTCCG 115
Query 120 TTACACTCTCAATATCTCTCTCCAATGGCGATGGTTACTACTACA-----C-tcttcttc 173
|||||||||||||| ||||||||||||| ||||||||||||||| | ||||||||
Sbjct 116 TTACACTCTCAATA--TCTCTCCAATGGCTATGGTTACTACTACACTCTTCTTCTTCTTC 173
Query 174 ttcttcttc-tC-AC-TGTaaaaaaag--aagaagcaaaaaaaaTGGCGGAAACTGAGAG 228
||||||||| || | | | | | || ||| ||||||||||||||||||||||||
Sbjct 174 TTCTTCTTCTTCTCCTTCTTCTCACTGTAAAAAAGAAAAAAAAATGGCGGAAACTGAGAG 233
Query 229 ACCCCACCGTTCTTCAAGTATTAAC---AGTAGCAGCAAC-A-A-TGGTTCTTCTACCGA 282
||||||||| ||||||||||||||| ||||||| |||| | | |||||| || |||||
Sbjct 234 ACCCCACCGGTCTTCAAGTATTAACAGTAGTAGCAACAACAACAGTGGTTCATCAACCGA 293
Query 283 TCTATTCATTTGTTTCACATCTCGTTTCTCTTCTTCTTCCTCTATGCGTCTCTCTTCCAA 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 294 TCTATTCATTTGTTTCACATCTCGTTTCTCTTCTTCTTCCTCTATGCGTCTCTCTTCTAA 353
Query 343 ATCCATCCATAGTCCAGCTCGTTCCGCTTGTCTCACTACTTCTCTTAGCCGTCGTCTCCG 402
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 354 ATCCATCCATAGCCCAGCTCGTTCCGCTTGTCTCACCACTTCTCTTAGCCGTCGTCTCCG 413
Query 403 TACTAGCGGTAGCTTGAAGAACGCTTCAGCCGGACTTTTGAACTCTCCGATGTTTGGTGC 462
|||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||
Sbjct 414 TACTAGCGGTAGCTTGAAGAACGCTTCAGCTGGAGTTTTGAACTCTCCCATGTTTGGTGC 473
Query 463 TAATGGAGGACGGAAGAGATCTGGATCTGGTTACGAGAATAGTAGCAACAACAAC---AA 519
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||
Sbjct 474 TAATGGAGGACGGAAGAGATCTGGATCTGGCTACGAGAATAGTAACAACAACAACAATAA 533
Query 520 TAACATAGAGCCGTCGTCTCCGAAGGTGACGTGTATTGGTCAAGTTAGAGTGAAGACTAG 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TAACATAGAGCCGTCGTCTCCGAAGGTGACGTGTATTGGTCAAGTTAGAGTGAAGACTAG 593
Query 580 GAAGCATGTGAAGAAGAAGATGAGAGCTAGATCTAGGAGGAAAGGAGGTGAGTCGAGTTT 639
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 594 GAAGCATGTGAAGAAGAAGATGAGAGCTAGATCTAGAAGGAAAGGAGGTGAGAATAGTTT 653
Query 640 TAGGAGATCCGTTGATCAAAACGACGGTGGTGGTGGTGGAGGTGGATGTCGTTTTGATGC 699
|||||||||||||||||||||||| |||||| ||||||||||||||| | ||
Sbjct 654 CAGGAGATCCGTTGATCAAAACGAC------GGTGGT---GGTGGATGTCGTTTTAAAGC 704
Query 700 GAGTGAGAATCGTTGGGTGCATCTTCCGGTGACTATCTGCGAGTCGTTGAGATCGTTTGG 759
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 GAGTGAGAATCGTTTGGTGCATCTTCCGGTGACTATCTGCGAGTCGTTGAGATCGTTTGG 764
Query 760 GTCTGAGCTCAACTGCTTCTTCCCTTGTAGATCTTCGTGTACGGAGAATAGTCATGGAGA 819
|||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||
Sbjct 765 GTCTGAGCTCAACTGCTTCTTCCCGTGTCGATCTTCCTGTACGGAGAATAGTCATGGAGA 824
Query 820 TGGGAGGCGAGTTGAGAGTAACAACGACGGTTGCGGCGGCGGAGGAGGAGGAAG---TTC 876
||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 825 TGGGAGGAGAGCTGAGAGTAACAACGACGGTTGCGGCGGCGGCGGAGGAGGAAGTAATTC 884
Query 877 GTGTGGTGCGATGTTTACGAGGTGGTTTGTGGCGGTGGAGGAGACGTCGGGTGGGAAGAG 936
|||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 885 GTGTGGTGCGGTGTTTACGAGGTGGTTTGTGGCGGTGGAGGAGACTTCGGGAGGGAAGAG 944
Query 937 AAGAGAGATTGAGCTTGTAGTTGGTGGAGAAGACGAAGTGGAGGAGGATAGGCGGAGGAG 996
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 945 AAGAGAGATTGAGCTTGTTGTTGGTGGAGAAGACGAAGTTGAGGAGGATAGGCGGAGGAG 1004
Query 997 TCGTCGGAGACATGTTTTCGAGGGGCTTGATCtgagtgagattgagatgaagacggagaa 1056
||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||
Sbjct 1005 TCGTCGGAGACATGTTTTCGAGGGGCTTGATTTAAGTGAGATAGAGATGAAGACGGAGAA 1064
Query 1057 gaaagagagaggaggagaagaagTTGGACGGATGAGTATTTGTTCTCCGCCGAAGAATGC 1116
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 G-AA-AGAGA-GAGGAGAAGAAGTTGGACGGATGAGTATTTGTTCTCCGCCGAAGAATGC 1121
Query 1117 TTTGTTGTTGATGCGGTGTAGATCAGATCCGGTTAAGGTGGCGGCGTTAGCTAACCGGGT 1176
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1122 TTTGTTGTTGATGCGGTGTAGATCTGATCCGGTTAAGGTTGCGGCGTTAGCTAACCGGGT 1181
Query 1177 TCGTGAAAGACAATTGTCGTTAAACGACGGCGTATACGGAGGAGGAACAGAGGAGGAAGA 1236
|||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1182 TCGTGAAAGACAGTTGTCGTTAAACGACGGCGTATAC---------ACAGAGGAGGAAGA 1232
Query 1237 TGATGAGAGAAGAAGAAGGTTTGAGCTGGAAATTGAAGATAAGAAACGGATCGACTTGTG 1296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 AGATGAGAGAAGAAGAAGGTTTGAGCTGGAAATTGAAGATAAGAAACGGATCGACTTGTG 1292
Query 1297 TGAGAAATGGATCTCCGGTGAAACTAATGTGGAGACAGAAGAAGTTTCAGTTA-CAGTT- 1354
||||||||||||||| ||||| |||| |||||| |||||||||||||||| || |||||
Sbjct 1293 TGAGAAATGGATCTCTGGTGAGACTACTGTGGAAACAGAAGAAGTTTCAG-TAGCAGTTG 1351
Query 1355 -----GCAGAAGCAGAAGTAG-A--AG-TG--CCTTTGCCTTCAAATCCAGCTACAGAGg 1403
||||||||||||| || | || | ||||||||||||||||||||||||||||
Sbjct 1352 CAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCTCCTTTGCCTTCAAATCCAGCTACAGAGG 1411
Query 1404 aagaagaaagagtcaaagctgttgaagattcgattgttgaagaagaacaagaagacgaag 1463
|||||||||||||||||| ||| ||||||||||||||||||||||||| | | ||||
Sbjct 1412 AAGAAGAAAGAGTCAAAGTTGTGGAAGATTCGATTGTTGAAGAAGAAC----A-A-GAAG 1465
Query 1464 CTTCGAAAATTCTGGATTCGGTTGAGGAAGAAATTGAAGCTACGATCATGAAAAACATTG 1523
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||
Sbjct 1466 CTTCGAAAATTCTGGATTCGTTTGAGGAAGAAATAGAAGCTACGATCATGAAAAAAATTG 1525
Query 1524 AAGACGAAATCAGAAACGCTATAGAAGAAGATGAGAAACTGGCTGAGATGGAAGAATTAG 1583
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1526 AAGACGAAATCAGAAACGCTATAGAAGAAGAGGAGAAACTTGCTGAGATGGAAGAATTAG 1585
Query 1584 CGGCGGTGGCGGTGGCTGAGACGGAGGAGGAAGAAGAAAACAAAGAGGTTGCTGTTGCTG 1643
||| ||||||||||||||||||||||||| |||||||| |||||||| | |||| |||
Sbjct 1586 CGGTTGTGGCGGTGGCTGAGACGGAGGAGGTAGAAGAAAGCAAAGAGG-T--TGTTCCTG 1642
Query 1644 CCTGTATAACTCAAAATGAGGAAAGATCCGAACAAGGAAACCGAGAACCCGACCCGAGTC 1703
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1643 ATTGTATACCTCAAAATGAGGAAAGATCCGAACAAGGAAACCGGGAACCCGACCCGAGTC 1702
Query 1704 CGGAAGTGGTGATGAGAAGAAGTCTACAAGAGGAAAAAACGGAG-AA-AG-AGA--A-GG 1757
|||||||||||||||||||||||||||||||||||| ||||||| || || ||| | ||
Sbjct 1703 CGGAAGTGGTGATGAGAAGAAGTCTACAAGAGGAAACAACGGAGAAAGAGAAGACGACGG 1762
Query 1758 CGACGCCGTATAAGGTGTTACCGGATTGTTTGCTGCTAATGATGTGTGAACCAAAGCTAT 1817
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1763 CGACGCCGTATAAGGTGTTACCGGATTGTTTGCTGCTTATGATGTGTGAACCAAAGCTCT 1822
Query 1818 CAATGGAAGTCTCTAAGGAGACTTGGGTTTGCAGTACAGATTTCGTCAGATGTTTACCAG 1877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1823 CAATGGAAGTCTCTAAGGAGACTTGGGTTTGCAGTACAGATTTCGTCAGATGTTTACCAG 1882
Query 1878 GAAGACCTCCGGCGAAGAAGATACCTCCAGAAGCTACCGGAGATAatcatcatcatcatc 1937
||||||||||||||||||||||||| |||||||| |||||| | ||||||||||||
Sbjct 1883 GAAGACCTCCGGCGAAGAAGATACCACCAGAAGCCGTCGGAGA-CA--ATCATCATCATC 1939
Query 1938 atcaACCCAAGAAGCGGATCGTCACGGCCGTTGATTCCAACGCATCTTCTCGCCGGCGGT 1997
|||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1940 ATCAACCCAAGAAGCGAATCGTCACAGCCGTTGATTCCAACGCATCCTCTCGCCGGCGGT 1999
Query 1998 CAATCGATAAACCACC-CTTACACCTTCAGCCGCCACGGTCATCGTGTTCATACCCAGCA 2056
||||||||| |||||| ||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 2000 CAATCGATAGACCACCACTT-CACCTACAGCCGCCACGGTCATCGTGTTCATACCCAGCA 2058
Query 2057 GCTCCACCGATAATAACGGCAGCTGCGGCGGTTGGGGAACAGAGGGTAGCCGGAGCTAAT 2116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2059 GCTCCACCGATAATAACGGCAGCTGCGGCGGTTGGGGAACAGAGGGTAGCCGGAGCTAAT 2118
Query 2117 AAGGCGTACGAGCCACCAGTGCTGCCACGTTGCAAATCGGAGCCGAGAAAGTCAGCGTCG 2176
|||| ||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 2119 AAGG--TAC-AGCCACCAGTGCTGCCACGTTGCAAATCGGAACCGAGGAAGTCAGCGTCG 2175
Query 2177 AAGCTAGCGCCGGAAGCTTGTTTCTGGAAAAATAGGAAGCTCGAGCCACACCCTCCGGCA 2236
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2176 AAGCTAGCGCCGGAAGCTTGTTTCTGGAAAAATAGGAAGCTTGAGCCACACCCTCCGGCA 2235
Query 2237 ACCGTCGGAGTCGGCGGTGCCGGAGTAGGGTTCTAGAAGAAAGGGGACGTGAGTGGGAAT 2296
|||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct 2236 ACCGTCGGTGTCGGCGGCGCCGGAGTAGGGTTCTAGAAGAA-GGAGACGTGAGTGGGAAT 2294
Query 2297 AAAG 2300
||||
Sbjct 2295 AAAG 2298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114156039330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5