BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478942
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1408 0.0
> AT3G15110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN:
20 plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3082
(InterPro:IPR021434); Has 77 Blast hits to 77 proteins in
38 species: Archae - 0; Bacteria - 37; Metazoa - 0; Fungi
- 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink). | chr3:5084278-5085843 REVERSE LENGTH=937
Length=937
Score = 1408 bits (762), Expect = 0.0
Identities = 889/948 (94%), Gaps = 17/948 (2%)
Strand=Plus/Plus
Query 1 ATCTTTCGACGGCTAAGAAAATGTTAGTGTTGCAGAGCCACCAATGTCTCTTCACTCTCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATCTTTCGACGGCTAAGAAAATGTTAGTGTTGCAGAGCCACCAATGTCTCTTCTCTCTCC 60
Query 61 CTCACCGTCTCCGTCCGACGCGTCTTATCTCTCCAATCCATTTGCTCTCTACCTTTACCC 120
|| ||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 61 CTTACCGTCTCCGTCCAACGCGTCTTATCTCTCCAATCCATTCGCTCTCTTCCTTTACCA 120
Query 121 GGATCCGACCCGATAGAATCCGGGTATTCGCCGTAAAAGAAATCGCCGATGTGGCGGAGG 180
||||||| |||| || |||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 121 GGATCCGTCCCGGTATAATCCGATTATCCGCCGTAAAAGAAATCGCCGATGTGGCGGAGG 180
Query 181 TGGAAGAAGATGGTCCAATTGAGCTACCTCCGTCGTCCACGTCTCCGTTTTCGTCTACGA 240
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
Sbjct 181 TGGAAGAAGATGGTCCAATTGAGCTTCCTACGTCGTCCACGTCTCCGTTTTCGTCTACTA 240
Query 241 ACTCCATTTTCGCCACTTCCGATGACCCTACTCCTCTCCAGTTAGCCACTAGCGTGCTTC 300
||||||||||||||||||||||||| |||||||||||||| || ||||| || |||||||
Sbjct 241 ACTCCATTTTCGCCACTTCCGATGATCCTACTCCTCTCCAATTGGCCACCAGTGTGCTTC 300
Query 301 TAACCGGTGCCATCACTGTCTTCCTCATCCGCTCGGTTCGACGGCGCGCTAAACGCGCCA 360
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 301 TTACCGGTGCCATCACTGTCTTCCTCATCCGCTCCGTTCGACGGCGCGCTAAACGCGCCA 360
Query 361 AAGAGCTGAGATTTAGATCTACTGGAGCAAAGAAATCGTTGAAAGAAGAGGCAATGGATA 420
||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 361 AAGAGCTGACATTTAGATCTACTGGAGCTAAGAAATCGTTGAAAGAAGAAGCAATGGATA 420
Query 421 ATCTGAAAGCGTTGGGTTCAACTCCGATAGAAGGTGGTAACTCAACTCCATCGGCGGCTC 480
|||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 421 ATCTAAAAGCGTTAAGTTCAACTCCGATAGAAGGTGGTAATTCAACTCCATCGGCGGCTC 480
Query 481 AGGCGTTTCTTGGTGCGATAGCTGCAGGAGTCATTGCTCTCATTCTTTACAAATTCACTG 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 481 AGGCGTTTCTTGGTGCGATAGCCGCAGGAGTCATTGCTCTCATTCTTTACAAATTCACTG 540
Query 541 TTACAGTTGAATCAGGACTCAATCGCCAGACTATCTCTGATAACTTCTCGGTTAGGCAAA 600
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 541 TTACAGTTGAATCAGGACTCAATCGTCAGACTATCTCTGATAACTTCTCGGTTAGGCAAA 600
Query 601 TCACAGTCACCGTAAGGACTATCATCAATGGTATATGCTATCTAGCAACATTTGTTTTCG 660
|||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 601 TCACGGTAACCGTAAGGACTATCATCAACGGTATATGCTATCTAGCAACATTTGTTTTCG 660
Query 661 GTCTCAACGCGTTTGGACTTCTCCTTTACGCTGGTCAATTAGCCTTCAATGAAGATTCTG 720
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 661 GTCTCAACGCGTTCGGACTTCTCCTTTACTCTGGTCAATTAGCCTTCAATGAAGATTCTG 720
Query 721 ATGAAGA---CATGAAGGCCACAACACAACCTGGAGACTCATCA---GGTGACAACAGTG 774
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 721 CTGAAGAAAACATGAAGGCCACAACACAACCTGGAGACTCATCATCAGGTGACAACAGTG 780
Query 775 AAGTAAATAAAAGCAATGAGGATCAAAGTTGAGGTGATTGATTAGTCCGGTCTTTGTATT 834
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 781 AAGTAAATAAAAGCAATGAGGATCAAAGTTCAGGTGATTGATTAGTCCGGTCTTT--A-- 836
Query 835 TGTACTATGAAACATGTATTAATAATATCATATTCATGTAGCCAACTATGTATAAAATTG 894
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 837 ----CTATGAAACATGTATTAATAATATCATATTCATGTAGCCAACTATGCATAAAATTG 892
Query 895 TTTCCTTCTTTTTCAATTTATTGTACACCTATCTATCCGTTTGTTGGG 942
||| |||||||| |||||||||||| || |||||||| ||||||||||
Sbjct 893 TTTTCTTCTTTT-CAATTTATTGTA-AC-TATCTATCTGTTTGTTGGG 937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46064712799
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5