BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478943
Length=1320
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15115.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1613 0.0
AT1G53180.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 89.8 6e-17
> AT3G15115.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G53180.1);
Has 47 Blast hits to 47 proteins in 15 species: Archae - 0;
Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 30; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr3:5085992-5087489
REVERSE LENGTH=1384
Length=1384
Score = 1613 bits (873), Expect = 0.0
Identities = 1169/1301 (90%), Gaps = 63/1301 (5%)
Strand=Plus/Plus
Query 1 GGTTGCCCACATGGGCACCTCCTAAATAAGTCTCCAGAATCTATGCTTCAAATAC-AAAC 59
||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||
Sbjct 1 GGTTGCCCACATGGGCACCTCCT-AATAAGTCCCCAGAATCTATGCTTCAAATACAAAAC 59
Query 60 CGAACAAaagaagaagaagaagaaacaagaaCACAAACTTATCTCTTTTTGTTATCTCTT 119
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 60 CGAACAAAAGAAGAAGAAGAAGAAACAAGAACACAAACTTATCTCTTTATGTTATCTTTT 119
Query 120 GTCTGAATT----AAAAAATGGATTCTACTTGGAATGATCATCAAGAATTGGAGCAATTC 175
||||||||| |||||||||||||||||| ||||||||||||||| ||||| ||||||
Sbjct 120 GTCTGAATTAAAAAAAAAATGGATTCTACTTCGAATGATCATCAAGAGTTGGAACAATTC 179
Query 176 GAAGCCATTGATGATCTTCTCGAAGATTTCTGGTTCTTTGATAATTTACTTGATAGAAGA 235
||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 180 GAAGCCATTGATGATCTCCTCGAAGATTTCTGGTTCTTTGATAACTTACTTGACAGAAGA 239
Query 236 TCAAGGATCTTGAGGTACTGTCACTCAGATCCTTACCCTTTTTCTCCCTCAtcttcttct 295
||||||||||||||||||||||| |||||||||||||| || | | | ||||||||
Sbjct 240 TCAAGGATCTTGAGGTACTGTCATTCAGATCCTTACCC---TT-T---T-A-CTTCTTCT 290
Query 296 tcttcttcATCCACTTGTCCGAAACCCGAAATCCCGAAAATTGGAGATTCGGATTCGGAG 355
||||||||| |||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct 291 TCTTCTTCA---ACTTGTCCCAAACCCGAATTACCGAAAATTGGAGATTCGGATTCGGAG 347
Query 356 ACTAAGCTTCTAGAAGCTTCCACTGGGGGAGGCTCTGTTCCACCGCCGTGTATAGAGAAA 415
| |||||||||||||||||| |||||||||| || |||||| ||||||||||||||||||
Sbjct 348 ATTAAGCTTCTAGAAGCTTCTACTGGGGGAGACTTTGTTCCGCCGCCGTGTATAGAGAAA 407
Query 416 AAAGAAGGTGGAGGCGAGCCTGAGAAGATAAATAAGATGATGAGAAGGCAGTTCTCTGAG 475
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 408 AAAGAAGGCGGAGGCGAGCCTGAGAAGATAAATAAGGTGATGAGAAGGCAGTTCTCTGAG 467
Query 476 AAGATTAGGGTTCAAGAACGAAGAACTTACTTGCAAAAGAAGGAACCTGTGGTTCGAGAA 535
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 468 AAGACTAGGGTTCAAGAACGAAGAACTTACTTGCAAAAGAAGGAACCTGTAGTTCGAGAG 527
Query 536 AAGGGAATTAAAGAAGGTTCGAGGAAGAACAAAACAAGTAGTACTAGTAGTTGTAGTAAC 595
||||||||||||||||||||||||||||| || | || || | | |||||||||||||
Sbjct 528 AAGGGAATTAAAGAAGGTTCGAGGAAGAAGAACAGAACAAGAA-T--TAGTTGTAGTAAC 584
Query 596 AATAATAGC-TC--GA-TGG---GA-GGG-GGG--TT-GCAGAGAACTCAGACATTGCCG 643
|||||||| || || | | || ||| ||| || ||||||||||||||| |||||
Sbjct 585 AATAATAGTGTCCAGAGTTGCTCGATGGGAGGGAGTTTGCAGAGAACTCAGACTTTGCCT 644
Query 644 AGTTACATAGGAAGAGAAGGCGATGTAAATGAGTTTCAAGATCAAGAGATTGATGATTCA 703
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 645 AGTTACTTAGGAAGAGAAGACGATGTAAATGAGTTTCAAGATCAAGAGATTGATGATTCA 704
Query 704 AGAATGGGATTCTTGATCCGTGAAGCCATCGCTAGCTCTTCTTCTTCTTCT------GGA 757
||||||||||| |||||||||||||||||||||| |||||||||||||||| |||
Sbjct 705 AGAATGGGATTTTTGATCCGTGAAGCCATCGCTAACTCTTCTTCTTCTTCTTCTTCTGGA 764
Query 758 CTTACTCCAACGAAACACAACACTCCAAAGGTTTCAAGCATTCCAAGGCATAGACCACCA 817
|||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||
Sbjct 765 TTTACTCCAACGAAACAGAACATTCCAAAGGTTTCATGCATTCCAAGGCATAGACCACCT 824
Query 818 AGAAACTCGAGATCAGAAGAAGCTATTCAAGAATTGGTCGTCAAATCACAAAGAAGCCCA 877
|||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 825 AGAAACTCAAGATCAGAAGACGCTATTCAAGAATTGGTCGTCAAATCACAAAAAAGCCCA 884
Query 878 AATCGCAAAACGCTGCGTAAAACGTTAAGCAGCATCGAGACGAAAGATATTCAAATGTTA 937
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 AACCGCAAAACGCTGCGTAAAACGTTAAGCAGCATCGAGACGAAAGATATTCAAATGTTG 944
Query 938 AAGGATTTGGACATTGAATTAGAGAAGAAGCAAGAAGA-G--GAA------CAGAGGA-G 987
|||||||| |||||||| |||||||||||||||||| | ||| ||||||| |
Sbjct 945 AAGGATTTTCACATTGAAACAGAGAAGAAGCAAGAAGAAGACGAAGAAAAACAGAGGAAG 1004
Query 988 TGTCCAACGCGCCACCGC-G--AAAACAC-GGTCTACAGCGGTGGTGGGACAGCCGATTC 1043
|||| | || ||||| | | |||| || ||||||||||||||||||||||||||||||
Sbjct 1005 -GTCCCATGCACCACCACTGGGAAAA-ACCGGTCTACAGCGGTGGTGGGACAGCCGATTC 1062
Query 1044 CGGTATGGGTTCCAAATGATTCGAGAAAAGACATGAAAGCTCAAATAAAGTTCTGGGCTC 1103
|||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1063 CGGTTTGGGTTCCAAAGGATTCGAGAAAAGACATGAAAGCTCAGATAAAGTTTTGGGCTC 1122
Query 1104 GGACCGTCGCAAGTAATGTTCGACAAGAATGCTGATATCATTCGCTTTCATTAACAAACA 1163
| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1123 GAACCGTCGCAAGTAATGTTCGACAAGAATGCTGATATCATTCACTTTCATTAGCAAACA 1182
Query 1164 AATTGCTTCTACTTCTACATATAAACAACACTCATTTCATATTCTTTCGTTCCCCTTT-T 1222
|||||||||||| | || | | ||||| | |||||||||||||||| |||||| ||| |
Sbjct 1183 AATTGCTTCTACGTATA-A-ACAAACA-C--TCATTTCATATTCTTTGGTTCCC-TTTAT 1236
Query 1223 GTTCAAAAAATATTCATCAATCATTTCTCCTACAATAATAA 1263
||||||||| ||||||| |||||||| |||||||||||||
Sbjct 1237 GTTCAAAAAC-ATTCATCTATCATTTCACCTACAATAATAA 1276
> AT1G53180.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 13
plant structures; EXPRESSED DURING: 6 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15115.1);
Has 58 Blast hits to 56 proteins in 22 species:
Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 4; Plants
- 29; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
| chr1:19831441-19832895 FORWARD LENGTH=1386
Length=1386
Score = 89.8 bits (48), Expect = 6e-17
Identities = 261/355 (74%), Gaps = 49/355 (14%)
Strand=Plus/Plus
Query 411 AGAAAAAAGA-AGGTGGA-GGCGAGCCTGAGAAGATAAAT-AAGATGATGAGAAGGCAGT 467
||||||| || || |||| ||||| | ||||||| || || | | ||| ||||||||
Sbjct 579 AGAAAAACGAGAGATGGACCGCGAGGCAAAGAAGAT-GATCAATAAGCTGACAAGGCAGT 637
Query 468 TCTCTGAGAAGATTAGGGTTCAAGAAC-GAAGAA-C-T--T-A-C-TT----GCA-AAAG 514
||||||||||||||||||||| ||||| || || | | | | | || ||| |||
Sbjct 638 TCTCTGAGAAGATTAGGGTTCTAGAACCGACGAGGCCTGGTGAGCATTTCTTGCAGAAA- 696
Query 515 AAGGAACCTGTGGTTCGAGA-AAAGGGAATTAAAGAAGGTTCGAGGAAG-AACAAAACAA 572
|||||| || | | |||||| ||||||| ||| ||| |||| || ||| |||||||||
Sbjct 697 AAGGAAACTATTGCTCGAGACAAAGGGA-TTACTGAAAGTTCTAG-AAGCAACAAAACAG 754
Query 573 GTAGTA-CTAGTAGTTGTAGTAACAATAATAGCTCGATGGGAGGGGGGTTGCAGAGAACT 631
| |||| | ||||||| ||||| | | || || | | ||||| ||||||
Sbjct 755 GAAGTAGC-AGTAGTTATAGTAGTG-TCA-AGATC-A-GT--------TTGCAAAGAACT 801
Query 632 CAGAC-ATTGCCGAGTTACATAGGAAGAGAAG--G----CGATGTAA-ATGAGTTTCAAG 683
|| || || ||| | | |||| |||||||||| | ||| | || | |||||| |||
Sbjct 802 CAAACGAT-GCCAAATAACATGGGAAGAGAAGAAGATAACGAGG-AAGACGAGTTTGAAG 859
Query 684 ATCAAGAGATTGATGATTCAAGAATGGGATTCTTGATCCGTGAAGCCATCGCTAG 738
||||||| | | || |||||||||||||||||||||||||||||| | |||||
Sbjct 860 ATCAAGAAA--GC-GACTCAAGAATGGGATTCTTGATCCGTGAAGCCCTGGCTAG 911
Score = 69.4 bits (37), Expect = 8e-11
Identities = 101/130 (78%), Gaps = 12/130 (9%)
Strand=Plus/Plus
Query 781 TCCAAAGGTTTCAAGCATTCCAAGGCATAGACCACCAAGAAACTCGAGATCAGAAGAAGC 840
|||||||||||||| || || |||||| ||||||||||||| || ||||| ||||| | |
Sbjct 924 TCCAAAGGTTTCAAACAATCAAAGGCAGAGACCACCAAGAAGCTTGAGATTAGAAG-A-C 981
Query 841 TATTCAAGAATTGGTCGTCAAATCACAAAGAAGCCCAAATCGCAAAACGCTGCGTAAAAC 900
| | | | | ||| || |||| | || ||| || ||||||||||||||||||
Sbjct 982 -A--C-TG--CT-ATGGTC-AA--ACAAGGTGGCTCAAGTCCCAAAACGCTGCGTAAAAC 1031
Query 901 GTTAAGCAGC 910
||||||||||
Sbjct 1032 GTTAAGCAGC 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64959505230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5