BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478958
Length=1254
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15260.1 | Symbols: | Protein phosphatase 2C family protein... 1626 0.0
> AT3G15260.1 | Symbols: | Protein phosphatase 2C family protein
| chr3:5138686-5140375 FORWARD LENGTH=1159
Length=1159
Score = 1626 bits (880), Expect = 0.0
Identities = 978/1025 (95%), Gaps = 8/1025 (1%)
Strand=Plus/Plus
Query 1 AGAAAGCGGCGGTGGAAGCT--GACATGCATCGGTGGCTTTCGTGTCAttctcttcttct 58
|||||||||||||||||||| |||||||| | |||| |||||||||||||||||||||
Sbjct 11 AGAAAGCGGCGGTGGAAGCTGAGACATGCAACAATGGCGTTCGTGTCATTCTCTTCTTCT 70
Query 59 ccttctctctctcttACGCTCGCGATTCAAGATTAATTTCGTTCTTCTTCACACACATAT 118
||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||
Sbjct 71 CCTTCTCTCTCTCTTACACTCGCGATTCAACATTAATTTCGTTCTTCTTCATACACATAT 130
Query 119 ATTAGATAATCGTGTCTTTATCTTCGAGCCATGACCGGTAGAGAAATTCTCCACAAGATG 178
| ||||| | ||||||| || ||| | ||||||||||||||||||| ||||||||||||
Sbjct 131 A-TAGAT-A--GTGTCTTCATTTTCCAACCATGACCGGTAGAGAAATCCTCCACAAGATG 186
Query 179 AAGGAATCCGTCAAGGAGAAAGTTGGGCTTGGTGCATCTGCTTCTTCTGCAGATTCATGG 238
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 187 AAGGAATCCGTCAAGGAGAAAGTTGGGCTTGGTGCATCTGCTTCATCTGCAGATTCAGGG 246
Query 239 AAAGGTAAGAGCAAGATGTCGAAGCAGATTACACATGGTTTTCATTTGGTGAAAGGGAAA 298
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 247 AAAGGTAAGAGCAAGATGTTGAAGCAGATCACACATGGTTTTCATTTGGTGAAAGGGAAA 306
Query 299 GCTTTTCACGAGATGGAGGATTATGTGGTTGCCAAATTCAAGGAAGTTGATGACAATGAG 358
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 307 GCTTTTCACGAGATGGAAGATTATGTGGTTGCCAAATTCAAGGAAGTTGATGATAATGAG 366
Query 359 CTTGGCT-TGTTTGCTATCTTCGATGGCCATCTTAGCCACGAGATTCCTGACTACTTGTG 417
||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 367 CTTGG-TCTGTTTGCTATCTTCGATGGCCATCTTAGCCACGAGATTCCGGACTACTTGTG 425
Query 418 CTCCCATTTGTTTGAGAACATCTTGAATGAGCCGAATTTCTGGCAAGAGCCTGAGAAAGC 477
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 426 CTCCCATTTGTTTGAGAACATCTTGAAAGAGCCGAATTTCTGGCAAGAACCTGAGAAAGC 485
Query 478 GATAAAGAAAGCTTATTATATAACGGATACAACGATTCTGGACAAGGCTGCTGATTTGGG 537
||||||||||||||| ||||||||||||||||||||||| |||||||| | |||||||||
Sbjct 486 GATAAAGAAAGCTTACTATATAACGGATACAACGATTCTAGACAAGGCAGATGATTTGGG 545
Query 538 GAAAGGAGGTTCTACTGCTGTGACTGCGATATTGATCAATTGCCAGAAGCTGGTGGTTGC 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 AAAAGGAGGTTCTACTGCTGTGACTGCGATATTGATCAATTGCCAGAAGCTGGTGGTTGC 605
Query 598 TAATGTCGGAGACTCTCGAGCTGTTATTTGCCAAAATGGTGTTGCGAAGCCACTCTCAGT 657
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 TAATGTTGGTGACTCTCGAGCTGTTATTTGCCAAAATGGTGTTGCGAAGCCACTCTCAGT 665
Query 658 TGATCATGAGCCGAGCATGGAGAAGGATGAAATTGAGAACAGAGGCGGATTCGTTTCTAA 717
|||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 666 TGATCATGAGCCGAACATGGAGAAGGATGAAATCGAGAACAGAGGAGGATTCGTTTCTAA 725
Query 718 CTTTCCTGGGGATGTTCCTCGAGTTGATGGTCAACTGGCTGTGGCAAGGGCATTTGGTGA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 CTTTCCTGGGGATGTTCCTCGAGTTGATGGTCAACTGGCTGTGGCAAGGGCATTTGGTGA 785
Query 778 TAAGAGTTTAAAGATGCATCTGAGTTCAGAACCATATGTCACGGTGGAGACAATTGATGA 837
||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||
Sbjct 786 TAAGAGTTTAAAGATGCATTTGAGTTCAGAACCATATGTTACGGTGGAGATAATTGATGA 845
Query 838 TGATGCAGAATTTCTTATCCTAGCAAGTGATGGGCTGTGGAAGGTCATGTCAAACCAAGA 897
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 846 TGATGCAGAATTTCTTATCCTAGCAAGTGATGGACTATGGAAGGTCATGTCAAACCAAGA 905
Query 898 AGCCGTTGACTCGATCAAGGGAATAAAAGATGCGAAGGCTGCAGCAAAGCACCTTGCAGA 957
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 AGCCGTTGACTCAATCAAGGGAATAAAAGATGCGAAGGCTGCAGCAAAGCACCTTGCAGA 965
Query 958 GGAGGCTGTTGCAAGGAAAAGCTCGGACGATATCTCAGTCGTCGTCGTGAAATTTCAGCG 1017
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 966 GGAGGCTGTTGCAAGGAAAAGCTCAGACGATATCTCAGTCGTCGTCGTGAAATTTCAGTG 1025
Query 1018 ACATT 1022
|||||
Sbjct 1026 ACATT 1030
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61646269260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5