BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478986
Length=2147
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15430.1 | Symbols: | Regulator of chromosome condensation ... 3127 0.0
> AT3G15430.1 | Symbols: | Regulator of chromosome condensation
(RCC1) family protein | chr3:5209020-5211745 FORWARD LENGTH=2038
Length=2038
Score = 3127 bits (1693), Expect = 0.0
Identities = 1866/1948 (96%), Gaps = 17/1948 (1%)
Strand=Plus/Plus
Query 214 CAGTTCGAAGAATCTGGCGTGTTCAGGTGGATTGATTCTTGCGATCTGACCCTTCTCATG 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 93 CAGTTCGAAGAATCTGGCGTGTTCAGGTGGATTGATTCTTGCGATCTGACCCTTCTCATG 152
Query 274 ATTAGTTTTCGATCTTCGAATAGACCAACTGCGAGATTCTCATCTATAACTCCGTTTTCC 333
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 ATTAGTTTCCGATCTTCGAATAGACCAACTGCGAGATTCTCATCTATAACTCCGTTTTCC 212
Query 334 TATTCAATTTCTTATCTCTTTCTACCATCCAACGTCTTCTTCATACGCTACTTCAATTGC 393
||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 213 TATTCGATTTCTTATCTCTTTCTACCATCCAACGTGTTCTTCATACATTACTTCAATTGC 272
Query 394 TCTAGATTTCGCCTCAAAATCTGACCCTCTTGTAGCTTGAAGCCACCCAAAGTCTCGTCT 453
||| |||||||||||||||||||| ||||| |||||||||||| |||||||||||||||
Sbjct 273 TCTCGATTTCGCCTCAAAATCTGATCCTCTAGTAGCTTGAAGCAACCCAAAGTCTCGTCC 332
Query 454 TTTACGTGTTCGATTAGGTCATTTTGAAACTCTGTTCTTAGAATTAGGAA-GGAATAAAA 512
||||| |||| |||||||||||||||||| ||||||||||||||||||| |||| |||
Sbjct 333 TTTAC--GTTCAATTAGGTCATTTTGAAACCCTGTTCTTAGAATTAGGAAGGGAA-GAAA 389
Query 513 TGGCTGACCGAAACTGGTTGATTTCGTTCGAGGATCTTCCTTCTCATTTGATCTTGGAGG 572
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 TGGCTGATCGAAACTGTTTGATTTCGTTCGAGGATCTTCCTTCTCATTTGATCTTGGAGG 449
Query 573 TGTTGACCTCTGGGAAGCTTAGTGCGGTTGATCTACTTAGCTTGGAATTGACCTCTAAGG 632
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 450 TGTTGACCTCTGGGAGGCTTAGTGCGGTTGATCTACTTAGCTTGGAATTGACTTCTAAGG 509
Query 633 TTTTCGGAGGGAGCCATGGATTCTACCCTTTGAAATTCAGATCACTCGCTGATTACGCGG 692
||||||||||||||||||||||||| |||||||||||||||||| | |||||||| ||||
Sbjct 510 TTTTCGGAGGGAGCCATGGATTCTATCCTTTGAAATTCAGATCATTAGCTGATTATGCGG 569
Query 693 CCTCTCAGCTTTGCTCTATGCATCCTGTCTACGTGGGAATGGGTTTGACTACACAGAAAG 752
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 570 CGTCTCAGCTTTGCTCTATGCACCCTGTCTACGTGGGAATGGGTTTGACTACACAGAAAG 629
Query 753 AGCTCTTTGCCAATTGTGAGGGAAACTGGAAGCGGCTTTTGAGTTTCCTACAGTCAGTTG 812
|||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||
Sbjct 630 AGCTCTTTGCCAATTGTGAGGGAAACTGGAAGCGGCTTTTTAGTTTCTTGCAGTCAGTTG 689
Query 813 AGCAATCCTCAGATATGGTTGAAACCTCTCAAGGCAAAATGCAAATTGCAACAGGAAAGT 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 AGCAATCCTCAGATATGGTTGAAACCTCTCAAGGCAAAATGCAAATTGCAACAGGAAAGT 749
Query 873 ATCACACTTTGCTAATCAATAACTCAAAGGTTTATTCTTGTGGTGTAAGTTTGTCCGGTG 932
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 750 ATCACACTTTGCTAATCAACAACTCAAAGGTTTATTCTTGTGGTGTAAGTTTGTCCGGTG 809
Query 933 TTCTTGCTCATGGCCCTGAAACTACTCAATGCGTAGCATTTACGCCTATAGAGTTTCCGT 992
|||||||||||||| ||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 810 TTCTTGCTCATGGCTCTGAAACTACTCAGTGTGTAGCATTTACACCTATAGAGTTTCCGT 869
Query 993 TCCCTGCACAAGTTGCTCAAGTCTCAGCCACACAGAACCATTCTGCTTTCGTATTGCAAT 1052
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 TCCCTGCTCAAGTGGCTCAAGTCTCAGCCACACAGAACCATTCTGCTTTCGTATTGCAAT 929
Query 1053 CTGGAGAGGTTCTCACTTGTGGGGATAATTCATCGCATTGCTGTGGTCATTTAGATACTA 1112
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 CTGGACAGGTTCTCACTTGTGGGGATAATTCATCGCATTGCTGTGGTCATTTAGATACTA 989
Query 1113 GCCGTCCAATATTTAGGCCTAAGCTTGTTGAGGCTTTGAAGAGGACTCCTTGTAAGCAGG 1172
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 990 GCCGTCCAATATTTAGGCCTAAGCTTGTTGAGGCTTTGAAGGGGACTCCTTGTAAGCAGG 1049
Query 1173 TGGCTGCTGGGCTTCACTTCACTGTGTTTCTATCAAGGGAAGGGCATGCGTATACTTGTG 1232
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1050 TGGCTGCTGGGCTTCACTTTACTGTGTTTCTATCAAGGGAAGGGCATGCATATACTTGTG 1109
Query 1233 GATCAAATACACATGGGCAGCTTGGTCATGGCGATACCATGGACAGACCAGTACCCAAAG 1292
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1110 GATCAAATACACATGGGCAGCTTGGTCATGGAGATACCTTGGACAGACCAGTACCCAAAG 1169
Query 1293 TTGTTGAGTTTCTTAAAAACATTGGCCCTGTGGTGCAAATCGCAGCTGGACCCAGCTATG 1352
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1170 TTGTTGAGTTTCTTAAAACCATTGGCCCTGTGGTGCAAATTGCAGCTGGACCCAGCTATG 1229
Query 1353 TTTTAGCTGTAACACAGGATGGCTCGGTTTACTCGTTTGGCTCTGGTTCTAACTTCTGTC 1412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 TTTTAGCTGTAACACAGGATGGCTCGGTTTACTCGTTTGGCTCTGGTTCTAACTTCTGTC 1289
Query 1413 TTGGTCATGGAGAGCAACAGGACGAGCTTCAGCCGCGTGTTATTCAGGCTTTTAAAAGAA 1472
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1290 TTGGTCATGGAGAGCAACAGGACGAGCTCCAGCCGCGTGTTATTCAGGCTTTTAAAAGAA 1349
Query 1473 AAGGTATTCATATACTCCGTGTCTCTGCAGGTGATGAACACGCCGTGGCACTTGATTCCA 1532
|||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1350 AAGGTATTCACATACTCCGTGTCTCTGCAGGCGATGAGCACGCCGTGGCACTTGATTCCA 1409
Query 1533 ATGGCCGTGTCTACACATGGGGTAAAGGTTACTGCGGTGCTCTAGGCCATGGAGACGAAA 1592
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1410 ATGGCCGTGTCTACACATGGGGTAAAGGTTACTGTGGTGCTCTAGGCCATGGAGACGAAA 1469
Query 1593 ATGACAAGATCACTCCTCAAGTTTTGGTCAATCTCAAGAATTGCCTTGCTGTCCAGGTGT 1652
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1470 ACGACAAGATCACTCCTCAAGTTTTGGTCAATCTCAACAATTGCCTTGCTGTCCAGGTGT 1529
Query 1653 GTGCAAGGAAAAGGAAGACTTTTGTTTTGGTGGAAGGTGGGTTATTGTATGGATTTGGGT 1712
||||||| |||||||||||||||||||||||||||||||| ||| | |||||||||||||
Sbjct 1530 GTGCAAGAAAAAGGAAGACTTTTGTTTTGGTGGAAGGTGGATTACTATATGGATTTGGGT 1589
Query 1713 GGATGGGGTTTGGAAGCCTTGGGTTCCCAGACAGAGGAGTTTCAGACAAAGTTCTGAGGC 1772
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1590 GGATGGGGTTTGGAAGCCTTGGGTTCCCGGACAGAGGAGTTTCAGACAAAGTTCTTAGGC 1649
Query 1773 CAAGAGTATTGGAGTGTCTGAAACCACACCGTGTCTCTCAAGTTAGCACCGGCTTGTATC 1832
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1650 CAAGAGTATTGGAGTGTCTGAAACCACACCGTGTCTCTCAAGTTAGCACCGGTTTGTATC 1709
Query 1833 ACACCATTGTGGTCACTCAACGTGGTCGCATTTTTGGGTTTGGAGATAATGAAAGAGCTC 1892
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1710 ACACCATTGTGGTCACTCAACGTGGTCGCATTTTTGGGTTTGGAGATAACGAAAGAGCTC 1769
Query 1893 AGCTTGGTCATGACTCACTCCGCGGCTGCTTAGAACCAACCGAAATCTTTCTCCATTGTG 1952
|||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1770 AGCTTGGTCACGACTCACTCCGTGGCTGCTTAGAACCTACCGAAATCTTTCTCCATTGTG 1829
Query 1953 GCCGTTCTCGTAGCCGGCTTTGTTGATCCAAGGTATAGATAAACAACCCTGTTTGTATGA 2012
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1830 GCCGTTCTCGTAGCCGGCTTTGTTGATCCAAGGTATAGATAAACAACCATGTTTGTATGA 1889
Query 2013 ACCGGATTGGGATTGGATTTACCGGTTAGTGTATGTTGTATTGATTTGTATCTGTTTGAT 2072
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1890 ACCGGATTGAGATTGGATTTACCGGTTAGTGTATCTTGTATTGATTTGTATCTGTTTGAT 1949
Query 2073 TT-TTCAAGTTGTGTGAGTAATAGAAGATATTTCC-G-CA-----G---AGA-A-TCATG 2119
|| ||||||||||| |||||||||||||||||||| | || | ||| | | |||
Sbjct 1950 TTCTTCAAGTTGTGAGAGTAATAGAAGATATTTCCAGACACCTTAGTGCAGAGAATTATG 2009
Query 2120 ACATGAGTTAGTTAATCTAAGAAGTTTT 2147
|||||||||| |||||||||||||||||
Sbjct 2010 ACATGAGTTAATTAATCTAAGAAGTTTT 2037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106475355945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5