BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478991
Length=875
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15450.1 | Symbols: | Aluminium induced protein with YGL an... 1299 0.0
> AT3G15450.1 | Symbols: | Aluminium induced protein with YGL
and LRDR motifs | chr3:5212984-5214121 FORWARD LENGTH=951
Length=951
Score = 1299 bits (703), Expect = 0.0
Identities = 786/825 (95%), Gaps = 9/825 (1%)
Strand=Plus/Plus
Query 17 AACAGAAAATGTTGGCAATATTTCAGAAAGCTTTTGCTCACCCACCGGAAGAACTCAACA 76
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AAC-GAAAATGTTGGCAATATTTCAGAAAGCTTTTGCTCACCCACCGGAAGAACTCAACA 118
Query 77 GTCCGGCGTCTCATGTT-TCCGGCGAAACCCCTAAACTTCCCGGAGAAACTCTCTCCGAC 135
||||||| |||||| || |||||| |||| |||||||||||||| |||||||||||||||
Sbjct 119 GTCCGGCTTCTCAT-TTCTCCGGCAAAACTCCTAAACTTCCCGGCGAAACTCTCTCCGAC 177
Query 136 TTCCTCTCTCGTCACCAAAACACCGCTCTCTCCATGAACTTCGGCGATTCCGCCGTCTTA 195
|||||||||| ||||||||||| ||| |||| |||||||||||||| ||||||||||||
Sbjct 178 TTCCTCTCTCATCACCAAAACAATGCTTTCTCTATGAACTTCGGCGACTCCGCCGTCTTA 237
Query 196 GCTTACGCTCGCCAAGAAACCTCTCTTCGTCAGAGGTTGTTCTGTGGACTAGATGGGATC 255
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 238 GCTTACGCTCGCCAAGAAACCTCTCTTCGTCAAAGGTTGTTCTGTGGACTAGATGGGATC 297
Query 256 TACTGTATGTTTCTAGGGAGATTGAGCAACCTCTGTACATTGAATCGACAATACGGTTTA 315
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 298 TACTGTATGTTTCTAGGGAGATTGAATAATCTCTGTACATTGAATCGACAATACGGTTTA 357
Query 316 TCTGGGAAGAACTCGAACGAGGCAATGTTTGTGATCGAAGCTTATCGAACACTTCGTGAT 375
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TCTGGGAAGAACTCAAACGAGGCAATGTTTGTGATCGAAGCTTATCGAACACTTCGTGAT 417
Query 376 CGTGGTCCTTACCCAGCTGACCAAG-TCATTAGAGGTCTTGAGGGAAGCTTCGCTTTCGT 434
||||||||||||||||| || |||| || |||||||||||||||||||||||||||||||
Sbjct 418 CGTGGTCCTTACCCAGCAGATCAAGTTC-TTAGAGGTCTTGAGGGAAGCTTCGCTTTCGT 476
Query 435 TGTCTACGATTCTCAAAGC-TCCTCTGTTTTCTCAGCTTTGAGTTCTGATGGAGGAGAGA 493
|||||||||| |||||| | |||||||||||||||||| |||||||||||||||||||||
Sbjct 477 TGTCTACGATACTCAAA-CTTCCTCTGTTTTCTCAGCTCTGAGTTCTGATGGAGGAGAGA 535
Query 494 GTCTTTACTGGGGAATTTCTGGAGACGGATCTGTTGTGATGTCTGATGATATTCAGATCA 553
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 536 GTCTTTACTGGGGAATTTCTGGAGACGGATCTGTTGTAATGTCTGATGATATTCAGATCA 595
Query 554 TAAAGCAAGGATGTGCTAAATCATTTGCTCCTTTCCCTACTGGGTGTATGTTTCATAGTG 613
|||||||||| ||||||||||| |||||||||||||||| ||| ||||||||||||||||
Sbjct 596 TAAAGCAAGGCTGTGCTAAATCGTTTGCTCCTTTCCCTAATGGATGTATGTTTCATAGTG 655
Query 614 AGACAGGGCTTAAGAGCTTTGAACATCCGACTAATAAGATGAAGGCAATGGCGAGGATTG 673
|||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||
Sbjct 656 AGACAGGGCTTAAGAGCTTTGACCATCCGACTAATATGATGAAGGCAATGCCGAGGATTG 715
Query 674 ATAGTGAAGGTGTTCTTTGTGGAGCTAATTTCAAAGTTGATGCTTGTTCTAAGATCATTA 733
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 716 ATAGTGAAGGTGTTCTTTGTGGAGCTAGTTTCAAAGTTGATGCTTGTTCTAAGATCAATA 775
Query 734 GTATCCCTAGAAGAGGAAGTGAAGCTAACTGGGCGCTGGCTAATTCTCGTTGATTTTGCT 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GTATCCCTAGAAGAGGAAGTGAAGCTAACTGGGCGCTGGCTAATTCTCGTTGATTTTGCT 835
Query 794 TCTTGTTTCGT-AACTCTTGCTTCTT-GTTGCGTTTTCTTTTTAT 836
||| ||||||| |||||||||||||| ||||||||||||||||||
Sbjct 836 TCTAGTTTCGTTAACTCTTGCTTCTTTGTTGCGTTTTCTTTTTAT 880
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42699024950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5