BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479007
Length=534
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15580.1 | Symbols: ATG8I, APG8H | Ubiquitin-like superfamil... 730 0.0
> AT3G15580.1 | Symbols: ATG8I, APG8H | Ubiquitin-like superfamily
protein | chr3:5273895-5275095 REVERSE LENGTH=623
Length=623
Score = 730 bits (395), Expect = 0.0
Identities = 499/547 (91%), Gaps = 15/547 (3%)
Strand=Plus/Plus
Query 1 TTGCTTTCAAGAGACGGAGACAAAAACACACACGACGAAGAAATCTCCCGGTGGTCGAAA 60
||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 33 TTGCTTTTGAGAGACGGAGACAAAAACACACACGACGAAGAAATCTCCGGGCGGTCGAAG 92
Query 61 AAGATGAAATCGTTCAAGGAACAATACACGTTAGG-TGAAAGGCTCGCAGAATCGCGAGA 119
|||||||||||||||||||||||||||||||| || |||||||||||| || ||||| ||
Sbjct 93 AAGATGAAATCGTTCAAGGAACAATACACGTT-GGATGAAAGGCTCGCGGAGTCGCGGGA 151
Query 120 GATAATCGCTAAGTATCCTACTCGGATTCCAGTAATTGCTGAGAAGTATTGCAAAACAGA 179
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 152 GATAATCGCTAAGTACCCTACTCGGATTCCAGTAATTGCTGAGAAGTATTGCAAAACGGA 211
Query 180 TCTACCTGCCATCGAGAAAAAGAAGTTTCTGGTTCCAAGAGATATGTCAGTTGGTCAATT 239
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 212 TCTGCCTGCCATCGAGAAAAAGAAGTTTCTGGTTCCAAGAGATATGTCAGTTGGCCAATT 271
Query 240 CATCTATATCTTGAGTGCTAGGTTACATTTATCTCCTGGTCAAGCGTTATTCGTGTTTGT 299
|||||| || |||||||||||||||||||| ||||||||| |||| ||||||||||||||
Sbjct 272 CATCTACATATTGAGTGCTAGGTTACATTTGTCTCCTGGTAAAGCCTTATTCGTGTTTGT 331
Query 300 GAACAACACTCTCCCTCAAACTGCTGCTCTGATGGATTCGGTCTATGAGTCGTACAAAGA 359
||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||
Sbjct 332 CAACAACACTCTCCCTCAAACTGCTGCTCTGATGGACTCGGTCTACGAATCTTACAAAGA 391
Query 360 CGAAGATGGGTTTGTTTACATGTGCTATAGCAGTGAGAAAACCTTTGGCTGAGCCAA-AA 418
|| ||||| || ||||||||||||||||||||||||||||||||||| ||| |||| ||
Sbjct 392 TGATGATGGATTCGTTTACATGTGCTATAGCAGTGAGAAAACCTTTGGTTGATCCAATAA 451
Query 419 TGATGTTAGTGT------ACATATACTTTGAAACATAAGCTGTACACTACATCCAAAGAC 472
|||||||||||| ||||||||||| ||||||||| ||| ||||||||| ||||||
Sbjct 452 TGATGTTAGTGTCTGTGTACATATACTTT-AAACATAAGATGTTCACTACATCAAAAGAC 510
Query 473 A-CAAACTCTTGTTAAGCTT-ATATTACTGCT--T-GTTTTATCCTTAGACTTTGTTCAT 527
| ||||| |||||||||||| |||| |||||| | ||||||||||||||||||||||||
Sbjct 511 ATCAAACACTTGTTAAGCTTTATATGACTGCTGCTTGTTTTATCCTTAGACTTTGTTCAT 570
Query 528 CTGTGCA 534
|||||||
Sbjct 571 CTGTGCA 577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25569180823
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5