BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479016
Length=1027
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15640.1 | Symbols: | Rubredoxin-like superfamily protein |... 1415 0.0
> AT3G15640.1 | Symbols: | Rubredoxin-like superfamily protein
| chr3:5299110-5301745 FORWARD LENGTH=1068
Length=1068
Score = 1415 bits (766), Expect = 0.0
Identities = 875/926 (94%), Gaps = 13/926 (1%)
Strand=Plus/Plus
Query 107 TCATCATCATCACCATGTGGAGAAGAATCGTCTCCTCTCAGCTCAAAACCCTAGCCGCCG 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 150 TCATCATCATCACCATGTGGAGAAGAATCGTCTCCTCTCAGCTCAAAACCCTAGCCGCCG 209
Query 167 ATGTCGTCGTCGCTGCTTCTCCTCGTCGATCAATAGCCACCACCGTTAGACCCGTCGGTT 226
| | |||||||||||||||||||||||||| |||||| ||||| ||||| |||||||
Sbjct 210 A--T-GTCGTCGCTGCTTCTCCTCGTCGATCGATAGCCGCCACCACCAGACCTGTCGGTT 266
Query 227 TCTACCTCGCTGCCAATCGATCAGCCATTTCCGCTTCTTCTTTCGTTATCCCTCGCCATT 286
|||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| | ||
Sbjct 267 TCTATCTCGCCGCCAATCGATCAGCCATTTCCGCATCTTCTTTCGTTATCCCTCGTCGTT 326
Query 287 TCAGCTCCGAATCAGTGGAGACTCCTGCGAAGAAGAAGGTGGAGGATGTAATGCCAATTG 346
|||||||||| ||||| ||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 327 TCAGCTCCGATTCAGTAGAGACTCCTGCGACGAAGAAGGTGGAGGATGTAATGCCCATTG 386
Query 347 CAACTGGACACGAGAAGGAGGAGCTTGAAGCTGAACTTGAGGGAAGGAGGCTGGATGATA 406
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 387 CGACTGGACACGAGAAGGAAGAGCTTGAAGCTGAACTTGAGGGAAGGAGGCTGGATGATA 446
Query 407 TTGACTTCCCTGAAGGTCCTTTTGGAACAAAGGAAGCTCCAGCTATTGTGAAGTCCTACT 466
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 447 TTGACTTCCCTGAAGGTCCTTTTGGAACTAAGGAAGCTCCTGCTATTGTGAAGTCCTACT 506
Query 467 ATGACAAGCGAATTGTGGGATGCCCTGGTGGTGAAGGCGAGGACGAGCACGATGTTGTCT 526
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 507 ATGACAAGCGAATTGTGGGCTGCCCTGGTGGTGAAGGCGAGGACGAGCACGATGTTGTCT 566
Query 527 GGTTCTGGCTGGAGAAAGGAAAGTCTTTTGAATGCCCGGTTTGCACTCAGTACTTTGAGC 586
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 567 GGTTCTGGCTGGAGAAAGGAAAGTCCTTTGAATGCCCGGTTTGCACTCAGTACTTTGAGC 626
Query 587 TGGAAGTGGTTGGTCCTGGTGGGCCTCCAGATGGTCACGGTGATGAAGACGATGAGCACC 646
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 627 TGGAAGTGGTTGGTCCTGGTGGTCCTCCGGATGGTCACGGTGACGAAGACGATGAGCACC 686
Query 647 ACCACTGATTCCTGCCTCTCCCTTGCCGCaaatttttctttttt-atttgcacattttca 705
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 687 ACCACTGATTCCGGCCTCTCCCTTGCCGCAAATTTTTCTTTTTTTATTTGCACATTTTCA 746
Query 706 tatattttaaaaaatttatGACTGGAATAAAA-AAGATTATCTGCCGTTTTGGTGAAACA 764
||| ||| ||||| ||||||| |||||||||| || || |||| ||||||||||||||||
Sbjct 747 TATCTTT-AAAAATTTTATGAATGGAATAAAACAAAAT-ATCTACCGTTTTGGTGAAACA 804
Query 765 CAGTTGAAAATGTTTTT-GATCCTTTTAGAACAAGACTCGGTATCAGAGTTTCCAAAGTG 823
||||||||||||||||| |||| |||||||||||||||||| |||||||||||| |||||
Sbjct 805 CAGTTGAAAATGTTTTTTGATCTTTTTAGAACAAGACTCGGCATCAGAGTTTCCCAAGTG 864
Query 824 CCATAACTCTTATGACCGTTGTTTTTATTTTTGTAACACTCTTGAATCAGAATCAGAATC 883
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 CCAAAACTCTTATGACCGTTGTTTTTATTTTTGTAACACTCTTGAATCAGAATCAGAATC 924
Query 884 ATTCTTGCCTTTTGCTTATTATATGACTCACCTTTTAATTTTATTTT-ATGGTTCGATGT 942
||||||| |||||||||||||||||| |||||||||| ||| ||||| ||||||||||||
Sbjct 925 ATTCTTGGCTTTTGCTTATTATATGATTCACCTTTTA-TTT-ATTTTTATGGTTCGATGT 982
Query 943 CTTTTTCATATAGGGACGTTTTGATCGTGTCCTTGATTCCTTGTGAACGGTCATATTATT 1002
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 983 CTTTT-CATATAGGGACGTTTTGATCGTGTCCTTGATTCCTTGTGAACGGTCATATAATT 1041
Query 1003 CAATAGATTATAGAAATACCA-TTTT 1027
||||||||||||||||| ||| ||||
Sbjct 1042 CAATAGATTATAGAAATTCCAATTTT 1067
Score = 106 bits (57), Expect = 5e-22
Identities = 104/123 (85%), Gaps = 17/123 (14%)
Strand=Plus/Plus
Query 1 AATTCTAAATTAAGAATCTCTCTATTTTC-TCCCAAAGAAG-------A---A--AAGAA 47
|||||||||||||||||||||||| | || ||||||||||| | | |||||
Sbjct 1 AATTCTAAATTAAGAATCTCTCTAATCTCTTCCCAAAGAAGAATCATCACTGAGGAAGAA 60
Query 48 TAAAACATTTGGGG-G--T-TTCGCTAATCCTTCAAGGTGTGACCTGAGAATCACAACAC 103
|||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TAAAACATTTGGGGAGTTTCTTCGCTAATCCTTCAAGGTGTGACCTGAGAATCACAACAC 120
Query 104 AAA 106
|||
Sbjct 121 AAA 123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50334615294
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5