BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479040 Length=1314 Score E Sequences producing significant alignments: (Bits) Value AT3G15850.1 | Symbols: FAD5, FADB, JB67, ADS3 | fatty acid desa... 1958 0.0 > AT3G15850.1 | Symbols: FAD5, FADB, JB67, ADS3 | fatty acid desaturase 5 | chr3:5359009-5361185 FORWARD LENGTH=1381 Length=1381 Score = 1958 bits (1060), Expect = 0.0 Identities = 1267/1358 (93%), Gaps = 49/1358 (4%) Strand=Plus/Plus Query 1 TAAGGGTTTAAGTCTCTTCTCTT--GGC-TTCTCTTAGCCATCACATCGATAATGGCTTC 57 |||||||||||| |||||||||| | ||||||||||||||||||||||||||||||| Sbjct 27 TAAGGGTTTAAGCCTCTTCTCTTCCTTCTTTCTCTTAGCCATCACATCGATAATGGCTTC 86 Query 58 TCTTTTAACAAAACCCAAAGCCC-TTTTCCTCTGTTCACCATCGTTATCTCCACGAACTT 116 |||| |||||||||||||| ||| ||||||||||||||||||||||||||||| |||||| Sbjct 87 TCTTCTAACAAAACCCAAA-CCCGTTTTCCTCTGTTCACCATCGTTATCTCCAAGAACTT 145 Query 117 TGAACACATCAACACCGTCATTGAATTTCACCAGAATTTCATTCACCCACCACCAAAAGC 176 |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 146 TGAACACAGCAACACCGTCATTGAATTTCACCAGAATTTCATTCACCCATCACCAAAAGC 205 Query 177 TTGCTCCTTTCAAGCCTCCAAGTCTCGTTGTTGCATTCTCTGAGAAGGGTTTGAAGAGAG 236 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 206 TTGCTCCTTTCAAGCCTCCTAGTCTCGTTGTTGCATTCTCTGAAAAGGGTTTGAAGAGAG 265 Query 237 ATGTCACCACAGCTGCTGCTGCGACGGAGGGAGATTACAGAAGGATAATGCTATCGGATG 296 ||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||| Sbjct 266 ATGTCACCACAGCTGCTGCAGCGACGGAGGGAGATTACAGAAGGATAATGTTATCTGATG 325 Query 297 TGTTGGTGAAGAAGAAGGAAAAAGTAGTTTGGTGGGAGAGGGAATGGAAAGCGATGGATT 356 |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| | Sbjct 326 TGTTGGTGAAGAAGAAGGAAAAAGTAGTTTGGTGGGAGAGAGAATGGAAAGCTATGGACT 385 Query 357 TTGGAGCTGTTGCTGTGGTTTTGTCTATGCATTTGCTTAGTCTTTTGGCTCCGTTTCAGT 416 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 386 TTGGAGCTGTTGCTGTCGTTTTGTCTATGCATTTGCTTAGTCTTTTGGCTCCGTTTCAAT 445 Query 417 TCAATTGGAGAGCTGTTTCGGTTGCTTTTGGGCTTTATATCGTTACAGGTCTTTTGGGTA 476 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 446 TCAATTGGAGAGCTGTTTCGGTTGCTTTTGGGCTTTATATCGTTACAGGTCTTCTGGGGA 505 Query 477 TTACTCTGTCTTTCCATAGGAATCTTTCTCATAAGGCTTTCAAGCTTCCCAAATGGCTTG 536 |||||||||||||||||||||||||||||||||| || |||||||| || |||||||||| Sbjct 506 TTACTCTGTCTTTCCATAGGAATCTTTCTCATAAAGCCTTCAAGCTACCTAAATGGCTTG 565 Query 537 AGTACTTGTTTGCTTATTGTGGAGCTCAAGCTCTTCAGGGAAACCCAATTGATTGGGTGA 596 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 566 AGTACTTGTTTGCTTATTGTGGAGCTCAAGCTCTTCAGGGAAACCCAATTGATTGGGTGA 625 Query 597 GTACACATAGGTATCATCATCAGTTTTGTGATTCAGACAGAGACCCTCATAGTCCACTTG 656 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 626 GTACACATAGGTACCATCATCAGTTTTGTGATTCAGACAGAGACCCTCATAGCCCACTTG 685 Query 657 ATGGGTTTTGGTTCAGTCATATGAATTGGATGTTTGATACCAATACAATCACCCAAAGGT 716 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 686 ATGGGTTTTGGTTCAGTCACATGAATTGGATGTTTGATACCAATACAATCACCCAAAGGT 745 Query 717 GTGGAGAGCCTAATAATGTTGGGGATTTGGAGAAGCAACCATTCTATCAATTCCTTCGAA 776 ||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| Sbjct 746 GTGGAGAGCCTAATAATGTTGGGGACTTGGAGAAGCAGCCATTCTATCGATTCCTTCGAA 805 Query 777 CCACCTACATTTTGCATCCGGTGGCTCTAGCGGTTGCTCTATACGCAATGGGTGGCTTCC 836 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| | Sbjct 806 CCACCTACATTTTGCATCCGCTGGCTCTAGCGGTTGCTTTATACGCAATGGGTGGCTTTC 865 Query 837 CATTCATCGTTTGGGGAATGGGTGTAAGAATAGTATGGGTGTATCATATAACTTGGCTAG 896 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 866 CATTCATCGTTTGGGGAATGGGTGTAAGAATAGTATGGGTATATCATATAACTTGGCTAG 925 Query 897 TGAACTCAGCTTGTCATGTATGGGGAAAACAAGCATGGAACACAGGCGATTTGTCTAAGA 956 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 926 TGAACTCAGCTTGTCATGTATGGGGAAAACAAGCATGGAACACAGGCGATTTGTCTAAGA 985 Query 957 ACAACTGGTGGGTAGCAGCTCTAGCATTCGGGGAAGGATGGCACAACAATCATCATGCTT 1016 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 986 ACAACTGGTGGGTAGCAGCTCTAGCATTCGGGGAAGGATGGCACAACAATCACCATGCTT 1045 Query 1017 TTGAGTTCTCAGCTCGACACGGTTTAGAATGGTGGCAACTTGATATGACTTGGTACGTCG 1076 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1046 TTGAGTTCTCAGCTCGACACGGCTTAGAATGGTGGCAACTTGATATGACTTGGTACGTCG 1105 Query 1077 TTAGGTTTCTTCAAGCCATCGGTTTAGCAACCGATGTCAAGCTCCCATCGGAAGCTCAGA 1136 ||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1106 TTAAGTTCCTTCAAGCCATCGGTTTAGCAACTGATGTCAAGCTCCCATCGGAAGCTCAGA 1165 Query 1137 AACAAAGAATGGCATTGACCA--G-C-GA-C-T----GA-T-C-----T-TG----AA-- 1172 |||||||||||||||| |||| | | || | | | | | | || || Sbjct 1166 AACAAAGAATGGCATTCACCAGCGACTGATCTTAAAAAACTACATGGTTATGCCTAAAGT 1225 Query 1173 -AAAACTGTCGGTACGATTGAAGCTATGAAGGTTTT--AAAA--A-----------TTTT 1216 |||||||||||| |||||||||||||||||||||| |||| | |||| Sbjct 1226 CAAAACTGTCGGTTCGATTGAAGCTATGAAGGTTTTAAAAAAGGATTTTGTTCTGCTTTT 1285 Query 1217 TTGTGTTTACATAAAGGTATATATCTGTGCAAGAGATTGTATGTGACAAACTGATTATGA 1276 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1286 TTGTGTTTACTTAAAGGTATATATCTGTGCAAGAGATTGTATGTGACAAACTGATTATGA 1345 Query 1277 ATTTTAAATATCTATAATTACATTCAATACAAAAGGAA 1314 || || |||||||||||||||||||||||||||||| Sbjct 1346 AT---AA-TATCTATAATTACATTCAATACAAAAGGAA 1379 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64658301960 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5