BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479046
Length=704
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15900.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 933 0.0
> AT3G15900.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to
26 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:5376251-5377179 REVERSE LENGTH=738
Length=738
Score = 933 bits (505), Expect = 0.0
Identities = 629/685 (92%), Gaps = 23/685 (3%)
Strand=Plus/Plus
Query 1 TAGTTTGTTATGAAAGTGAGTGAAAACGCAAACGTGGG-TTGTGGGGGAGCGCTTGCGTT 59
|||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||
Sbjct 9 TAGTTTGTTATGAAAGTGAGTGAAAACGCAAACGTGGGTTTGT-GGGGAGCGTTTGCGTT 67
Query 60 CTAAACTTTCAAGAATCGACGCAAAACGTGAGATGTGTTTTTAGGTAGGCGTCGTG---- 115
||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 68 CTAAAGTTTCAAGAATCGACGCAAAACGTGAGATGTGTTTTT-GGTAAGCGTCGTGTCTC 126
Query 116 TCGCTCTTATCCTCTGTTCACGCCATTCATAAGCCTGTATGGCCACaaaaaaaaaCGACA 175
|| |||||||||||||||||||||||||| |||||||| || |||| |||| ||||||
Sbjct 127 TCTCTCTTATCCTCTGTTCACGCCATTCACAAGCCTGTGTGACCAC---AAAATACGACA 183
Query 176 GATTTagagagaaaagagagagagagaTATGTCAGGTTCTGTTTTCGTTCCCGGTATGGC 235
|| |||||||| ||| ||| |||||| |||||||||||||| |||||||||||||||||
Sbjct 184 GAATTAGAGAG-AAA-AGATAGAGAG--ATGTCAGGTTCTGTCTTCGTTCCCGGTATGGC 239
Query 236 GATTGGAGTTCCGACGCTTTCTCGTTCGAGCTCTGCTCACCGGAGCTTGGAACCCACGAA 295
|||||||||||| |||||||||||||||||||||| |||||||||||| ||||| |||||
Sbjct 240 GATTGGAGTTCCCACGCTTTCTCGTTCGAGCTCTGTTCACCGGAGCTTAGAACCGACGAA 299
Query 296 GAAGATGACAATGACTAATGTCAAATTCGTGACCATTTTTCGAAATCCGTCAAGCTGTTC 355
||||||||| |||| || ||||||||||||||||| ||||||||| ||||||| ||||||
Sbjct 300 GAAGATGACTATGAGTAGTGTCAAATTCGTGACCAGTTTTCGAAACCCGTCAAACTGTTC 359
Query 356 AGGGACAAAACGGTCATTTCGCGTTACT-GCTTCCAATGACCGGTCGGAACAAGCAGATA 414
|||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct 360 AGGGACAAAACGGTCATTTCGCGTTA-TGGCTTCCGATGACCGGTCGGAACAAGCAGATA 418
Query 415 ACGGTCAAGGAGTTCAGGAGGACTTAAACTACTTGTTGAAGATCGGAGTTGGTTCAGTGA 474
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ACGGTCAAGGAATTCAGGAGGACTTAAACTACTTGTTGAAGATCGGAGTTGGTTCAGTGG 478
Query 475 CAGGCGCAGCTATAATCAAATACGGAAGTGTCTTGTTCCCACAGATCACAAGACCTAATC 534
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CAGGTGCAGCTATAATCAAATACGGAAGTGTCTTGTTCCCACAGATCACAAGACCTAATC 538
Query 535 TCACTCTGGCCCTCTTCATTATCATCGCTCCTGTTGTAATCTCTGTTCTCCTTTTGTTCC 594
||||||| ||||||||||||||||| ||||||||||||||||| ||| ||||||||| ||
Sbjct 539 TCACTCTAGCCCTCTTCATTATCATAGCTCCTGTTGTAATCTCCGTTATCCTTTTGTCCC 598
Query 595 TATCATCATCATC--C-TCCAAGAAACACAACTGATTGGTAATaaaaaaa-GTGTAAATG 650
||||||||||||| | ||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 599 TATCATCATCATCTTCCTCCAAGAAACAGAACTGATTGGT--TAAAAAAATGTGTAAATG 656
Query 651 TAATTCAGCTCATTGTGAAAA-GAT 674
|| |||| ||||||||||||| |||
Sbjct 657 TATTTCACCTCATTGTGAAAAAGAT 681
Score = 56.5 bits (30), Expect = 3e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 672 GATGAGAAAGTTTCAGTATAATCCAGAATTAAA 704
||||||||||||||||||||||||||||| |||
Sbjct 692 GATGAGAAAGTTTCAGTATAATCCAGAATAAAA 724
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34108985813
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5