BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479047 Length=2382 Score E Sequences producing significant alignments: (Bits) Value AT3G15920.1 | Symbols: | Phox (PX) domain-containing protein |... 3655 0.0 > AT3G15920.1 | Symbols: | Phox (PX) domain-containing protein | chr3:5383596-5387009 REVERSE LENGTH=2494 Length=2494 Score = 3655 bits (1979), Expect = 0.0 Identities = 2258/2391 (94%), Gaps = 26/2391 (1%) Strand=Plus/Plus Query 1 GATCGAGAGAGGAGAAGAAGAATAATCAAGAGAGTAAAAAGGAAATGAATCTCTACGCGC 60 |||||||| ||||||||||| ||||||||||||| ||||||||||||||| ||||||| Sbjct 13 GATCGAGAAAGGAGAAGAAG--GAATCAAGAGAGTAGAAAGGAAATGAATCTATACGCGC 70 Query 61 ACGATCTTTCTCTTCTTGATTTCAATTACAACGTCTCCGGTCCCTTCGGCGAGTCGCTAT 120 |||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||| Sbjct 71 ACGATCTTTCTCTTCTCGATTTCAATTACAACGTCTCCGGTCCCTTCGGCGAGCCACTAT 130 Query 121 CTCACCGCTTCCTCTCGCCTGGCCCTTTCTTCCAAGGTGAGGACGACGATTATCGCCGTT 180 |||||||||||||||| |||||||||||||||||||| || || |||||||| ||||| | Sbjct 131 CTCACCGCTTCCTCTCTCCTGGCCCTTTCTTCCAAGGCGAAGAAGACGATTACCGCCG-T 189 Query 181 ATACCACCAGCTACAGTCACGACGGAGCTAATGGACGAGAAGCAGATACCA-ATTCAAGA 239 | | || ||||||||||||||||||||||||||||||||| | || | || |||||||| Sbjct 190 A-A-TACGAGCTACAGTCACGACGGAGCTAATGGACGAGAACCGGACA-CAGATTCAAGA 246 Query 240 GTATCTCCGCCGCATCGCCACGACGGAAGGTCTCCGTTACCTCTGGGGATGGATTGGAGT 299 | |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 247 GCATCTCCGCCGCATCGCCACGACGGGAGGTCTCCGTTACCTCTGGGAATGGATTGGAGT 306 Query 300 GCTCCTCCTCGTCACTTGGAAGGACGGAACACGGTTTGGCCACACGATTC-TCGAACTGG 358 ||||||||||||| ||||||||| || |||||||||||||||| || || ||||||||| Sbjct 307 TCTCCTCCTCGTCATTTGGAAGGAAGGGACACGGTTTGGCCACATGA-TCATCGAACTGG 365 Query 359 TTGGAGTTACTGTGTCACTGTCCCCTCTTGGGTTGACCTTCCCAAGTCAAGCGTTTCAGA 418 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 366 TTGGAGTTACTGTGTCACTGTCCCTTCTTGGGTTGACCTTCCCAAGTCAAGCGTTTCAGA 425 Query 419 TCCCGCCGTGTTTTATAGAGTGCAAGTGGCGATACAATCTCCTGAGGGAATCACTTCTGC 478 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 426 TCCTGCCGTGTTTTATAGAGTGCAAGTAGCGATACAATCTCCTGAGGGAATCACTTCTGC 485 Query 479 TAGGATGATACTTAGAAGATTTAATGATTTCTTGGAGTTATATTCGTCTATTAGAAAGGA 538 |||| || ||||||| || || ||||||||||||||||||||||||||||||| |||||| Sbjct 486 TAGGCTGGTACTTAGGAGGTTCAATGATTTCTTGGAGTTATATTCGTCTATTAAAAAGGA 545 Query 539 GTTTGTGAAGAAAAGCTTACCCCAGGCACCACCAAAGAAGATTTTGAGGATGAGAAACCA 598 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 546 GTTTGTGAAGAAAAGCTTACCCCAGGCACCACCAAAGAAGATTCTGAGGATGAGAAACCA 605 Query 599 GACACTTTTGGAAGAGAGGAGGTGTTCTCTGGAAGATTGGATGAATAGACTTTTGTCAGA 658 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 606 GACACTTTTGGAAGAGAGGAGGTGCTCTCTGGAAGATTGGATGAATAGACTTTTGTCAGA 665 Query 659 TATTGATATATCTAGAAGCGCTCTGATAGCAACATTTCTTGAGCTTGAAGCTGCTGTCAG 718 |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 666 TATTGATATATCCAGAAGCGCTCTTATAGCTACATTTCTTGAGCTTGAAGCTGCTGTCAG 725 Query 719 GTCTTATTTTAACGATGAATATCAAGAAACTGAAGGTACCTCTGGGGATATTCCGCCACT 778 |||||||||||| |||||||||||||||||||||| |||||||||||| |||||| |||| Sbjct 726 GTCTTATTTTAATGATGAATATCAAGAAACTGAAGATACCTCTGGGGACATTCCGTCACT 785 Query 779 TCTACCTACCACCAGT-TCTGATGTTCCTGGTAGTTCATCAGTTACCGTAGATCAT-ACC 836 |||||||||||||| | |||||||| ||||||||||||||||||||| |||||||| | | Sbjct 786 TCTACCTACCACCA-TCTCTGATGTCCCTGGTAGTTCATCAGTTACCATAGATCATGA-C 843 Query 837 AATGATTCTGCTGATGAGACATCTGATGCCTCAACAGTGAAGCATGACGATGCTAGTCTC 896 |||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| |||| Sbjct 844 AATGATTCTGCTGATGAGACATCTAATGCCTCAACAATGAAGCATGACGAAGCTAATCTC 903 Query 897 AAAAATCTTGTCTCAAGGAATTCAACTTCTGTAGATAATGTGACTGATTGGCATGAGTTG 956 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 904 AAAAATCTTTTCTCAAGGAATTCAACTGCTGTAGATAATGTGACTGATTGGCATGAGTTG 963 Query 957 ATCTCAGAATATGGACTTCTAGATAAAAGTTCTTTTCAGGAAAAAGTTGAACGTCTTTCT 1016 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 964 ATCACAGAATATGGACTTCTAGATCAAAGTTCTTTTCAGGAAAAAGTTGAACGTCTTTCT 1023 Query 1017 AGTACTAATGGAGCTGCAGCAACTGGTACCGTAACCGGAGAGGGCATTTCTAGTGGAGTT 1076 ||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 1024 AGTACTAATGGAGATGCAGCAACTGGTACCGTAACCAGAGGGGGCATTTCTAGTGGAGTT 1083 Query 1077 GGGATTCAGAGGTTGGATGGAAGTGATAGAAAGTTTCAAGAAAAGATCACTGAAAGC--- 1133 || ||||||||||||||||||||||||||||||||||||||| || || ||||||| Sbjct 1084 GGAATTCAGAGGTTGGATGGAAGTGATAGAAAGTTTCAAGAACTGACCATTGAAAGCATT 1143 Query 1134 AATAAAACTCATGTAAGCGATTTTGAGGCGTCAACTCCTGGGGAACCTGATTTAGTTAAC 1193 || ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 1144 AAAAAAACTCATGTAAGCGATTTTGAGGCGTCAACTGCTGTGGAACCTGATTTAGTTAAC 1203 Query 1194 CAAGGCTCGATGGATATTCATGGTGAAGCTCATGGAAACATGTATGGTGCGGTTGGTGGA 1253 |||||| | |||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct 1204 CAAGGCGCTATGGATATTCATGGTGAAGCCCATGGAAACATGTATGGTGCAGTAGGTGGA 1263 Query 1254 GATACTGAGACTCAGAAGGATCTGGCTATTGTATTTCAGTCTGAGGAGAGACATAAGTTA 1313 ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||| Sbjct 1264 GATACTGAGACTCAGAAGGATCTTGCTATTGTATTTCAGTCTGAGGAGCGACATAAATTA 1323 Query 1314 AAGAGGGTTATTGATACGTTAAAGCAGAGACTGGAAACAGCAAAAGCTGACACGGAAGAT 1373 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1324 AAGAGGGTTATTGATACATTAAAGCAGAGACTGGAAACAGCAAAAGCTGACACGGAAGAT 1383 Query 1374 CTTATCTCAAGGCTGAATCAGGAGTTAGCTGTTCGACAGTTTTTGTCAACAAAGGTAAGA 1433 ||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||| Sbjct 1384 CTTATCTCAAGGCTGAATCAGGAGTTAGCCGTTCGACAATTTCTGTCAACAAAGGTAAGA 1443 Query 1434 GATTTAGAGGTTGAACTTGAAACAACTCGAGAGAGCTGCAAGCAAGGCATGGAGAAAACA 1493 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1444 GATTTAGAGGTTGAACTTGAAACAACTCGAGAGAGCTGCAAGCAAGGCATGGAGAAAACA 1503 Query 1494 GTTCTTGATGAAAAGGAAAGATTTACTCAAATTCAGTGGGATATGGAGGAACTCCGCAAG 1553 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1504 GTCCTAGATGAAAAGGAAAGATTTACTCAAATTCAGTGGGATATGGAGGAACTCCGCAAG 1563 Query 1554 CAATGCATGGAAATGGAATCGTTGTTAAACTCTATAAAGGACGAGAAAACACATATTGAG 1613 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1564 CAATGCATGGAAATGGAATCGTTTTTAAACTCTATAAAGGACGAGAAAACACATATTGAG 1623 Query 1614 ACTGCAAATGAGTCACTTGTTCAAGAAAATCAGATGTTGCTGCAGCAGATCAATGATATA 1673 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1624 ACTGCAAATGAGTCACTTGTTCAAGAAAATCAGATGTTGCTGCAGCAGATCAATGATATA 1683 Query 1674 CGAGAAAATTTTGAGAATTTTCATAAAGAACATGAAGAGCTGGAAGTAAAATCGAAAGCA 1733 ||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| Sbjct 1684 AGAGAAAATTTTGAGAATTTTCATAAAGAACACGAAGAGCTGGAAGTGAAAGCGAAAGCA 1743 Query 1734 GAGCTGAAAGTTCTCGTCAAAGAAGTCAAGTCTCTCCGAACCACTCAATCAGAATTGAGA 1793 ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1744 GAGCTGAAAGTCCTCGTTAAAGAGGTCAAGTCTCTCCGAACCACTCAATCAGATTTGAGA 1803 Query 1794 CAAGAGCTTAGTCG-CACAATGAAAGAAAAACTGGAGATGGAGAGAATTGTTCAACGCGA 1852 ||||||||||| || || ||||||||||||||||||||||||||||||||||||||| || Sbjct 1804 CAAGAGCTTAG-CGGCATAATGAAAGAAAAACTGGAGATGGAGAGAATTGTTCAACGGGA 1862 Query 1853 GAAGGATAGAGAAGAAACTGCAAAAAACGCAGACAAGAAGTTGCTGCATGAGTGTGATGT 1912 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1863 GAAGGATAGAGAAGAAACTGCAAAAAACGCAGACAAGAAGTTGCTGCATGAGTGTGATGT 1922 Query 1913 TCTACAAAATCGGCTTCAAGAGTGCAATGTCAAGTTCCACATTGAAGAGGAGTGTAAATT 1972 ||||||||| ||||||||||| ||||||||||||||| |||||||||||||| ||||||| Sbjct 1923 TCTACAAAACCGGCTTCAAGAATGCAATGTCAAGTTCGACATTGAAGAGGAGGGTAAATT 1982 Query 1973 AATAATGGACTCATCATCTCTCTCTGAAGCCATCGAGCTACTAGCAACATCCGATAACCG 2032 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 1983 AATAATGGACTCATCATCTCTATCCGAAGCCATCGAGCTACTAGCAACATCCGATAACCG 2042 Query 2033 AATAGGTCTTCTAATTGCTGAGACGCAGCTTCTCTCAGAGGAAGTGGAAAAGCTGAAGCT 2092 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2043 AATAGGTCTTCTAATTGCTGAGACGCAGCTTCTCTCAGAGGAAGTGGAAAAGCTGAAGCT 2102 Query 2093 ATCATCAGGAGGGCATCGTGGAACAGACGATGTAGTGAGGAAGATGCTGACAGAGGTTCT 2152 | ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 2103 AACATCAGGAGGGCATCGTGGAACAGACGATCTAGTAAGGAAGATGCTGACAGAGGTTCT 2162 Query 2153 GATTGATAATGCCAGATTAAGGAAGCAGGTTAACTCTGTTCTTCGTTGCTCTTTGTCCGG 2212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2163 GATTGATAATGCCAGATTAAGGAAGCAGGTTAACTCTGTTCTTCGTTGCTCTTTGTCCGG 2222 Query 2213 ACATGGAGTATCAGTCagagaagccggaacagaagaagaagtagaagagcaagaaggaag 2272 ||||||| ||||||||||||||||||||||||||| ||| | || || | |||||||| Sbjct 2223 ACATGGAATATCAGTCAGAGAAGCCGGAACAGAAGTAGA--T-GACGA--A-GAAGGAAG 2276 Query 2273 TATTGATCTAGCAAGAACTGTTATGAGCAAGATCCTTGAGAAATGATTTTACCAGGTTTT 2332 ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 2277 TATTGATCTAGCAAGAACTGTTATGAGCAAGATCCTTGAGAAATGATTTGATCAGGTTTT 2336 Query 2333 TAGTGAAACTATGCTAAT-TACAAATGGTTTTATCTTTTTAAAAATACTGT 2382 | ||||||||| |||||| | ||||||||||||||||| | |||||||||| Sbjct 2337 TCGTGAAACTAAGCTAATCT-CAAATGGTTTTATCTTTCTGAAAATACTGT 2386 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 118272484020 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5