BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479064
Length=808
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16100.1 | Symbols: ATRABG3C, ATRAB7D, RABG3c | RAB GTPase h... 1175 0.0
> AT3G16100.1 | Symbols: ATRABG3C, ATRAB7D, RABG3c | RAB GTPase
homolog G3C | chr3:5459172-5460790 FORWARD LENGTH=953
Length=953
Score = 1175 bits (636), Expect = 0.0
Identities = 757/814 (93%), Gaps = 14/814 (2%)
Strand=Plus/Plus
Query 1 AAAAACATCAATGGCTTCTCGCCGGCGAGTGCTTCTCAAGGTTATTATTCTCGGAGACAG 60
|||| |||||||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 89 AAAAGCATCAATGGCTTCTCGGCGGCGAGTGCTTCTGAAGGTTATAATTCTCGGAGACAG 148
Query 61 TGGGGTTGGGAAGACCTCCTTAATGAATCAGTTTGTGAATCGAAAATTTAGTAATCAGTA 120
||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 149 TGGGGTTGGGAAGACGTCCTTGATGAATCAGTTTGTGAATCGAAAATTCAGTAATCAGTA 208
Query 121 TAAAGCTACCATTGGAGCTGATTTCTTGACCAAAGAGGTCCAAATTGATGACCGAATCTT 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 209 TAAAGCTACCATTGGAGCTGATTTCTTGACCAAAGAGGTCCAAATTGATGACAGAATCTT 268
Query 181 CACTTTGCAGATTTGGGATACTGCTGGGCAAGAGAGGTTTCAAAGTTTGGGTGTTGCTTT 240
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 269 CACTTTGCAGATTTGGGATACTGCAGGGCAAGAGAGGTTCCAAAGTTTGGGTGTTGCTTT 328
Query 241 CTACCGAGGAGCCGATTGTTGTGTTCTTGTGAATGATGTCAATGTCATGAAATCCTTTGA 300
|||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 329 CTACCGAGGAGCGGACTGTTGTGTTCTTGTGAATGATGTCAATGTTATGAAATCCTTTGA 388
Query 301 AAATCTTAACAACTGGAGGGAAGAGTTCTTGATCCAGGCTAGTCCTTCTGATCCTGAAAA 360
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 389 AAATCTTAACAACTGGAGGGAAGAGTTCCTGATCCAGGCTAGTCCTTCAGATCCTGAAAA 448
Query 361 CTTCCCTTTTGTTGTGTTGGGGAACAAGACAGATGTTGACGGTGGAAAGAGTCGAGTGGT 420
|||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 CTTCCCCTTCGTTGTCTTGGGGAACAAGACAGATGTTGACGGTGGAAAGAGTCGAGTGGT 508
Query 421 TTCTGAGAAGAAAGCAAAGGCTTGGTGTGCATCCAAGGGAAACATTCCTTACTTCGAGAC 480
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 509 TACTGAGAAGAAAGCAAAATCTTGGTGTGCATCCAAGGGAAACATTCCTTACTTCGAGAC 568
Query 481 TTCAGCGAAAGAAGGATTCAATGTTGATGCAGCTTTCGAGTGCATAGCCAAAAATGCCCT 540
||| || ||||| ||| |||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 569 TTCGGCCAAAGATGGAGTCAATGTTGATGCAGCTTTCGAATGCATTGCCAAAAATGCTCT 628
Query 541 CAAGAATGAACCTGAAGAAGAAGTGTACCTTCCGGACACCATTGATGTAGCTGGGGCTCG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 CAAGAATGAACCTGAAGAAGAAGTGTACCTTCCGGACACCATTGATGTAGCTGGGGCTCG 688
Query 601 GCAACAAAGATCAACTGGGTGTGAATGCTAACCAACTCTGTTGCAAGGATTATTAGAAAG 660
||||||||||||||||||||| ||||||||||||||| ||||||| || |||||||||||
Sbjct 689 GCAACAAAGATCAACTGGGTGCGAATGCTAACCAACTTTGTTGCATGGTTTATTAGAAAG 748
Query 661 AGCATGT-TTTAAA--AGAGACCTTTTTAATTAGTTTCTTTGACATTATTGTGATGTGTA 717
| ||||| ||| || ||||||||||||| ||||||||| |||||||||||||||||
Sbjct 749 AACATGTGTTTTAAGGAGAGACCTTTTTA----GTTTCTTTGGCATTATTGTGATGTGTA 804
Query 718 TCAATTAGCATAAC-CACCTTTGTTTCTTTCTG-CA-AATTAAAAACAAATTTTTGGTCA 774
|||||||||||| | ||||||||||| | | || ||| |||||| |||||| |||||
Sbjct 805 TCAATTAGCATA-CGCACCTTTGTTT-TGGATTACAGAATCAAAAACGAATTTT-GGTCA 861
Query 775 CTTGTTTCATTCTTAATCTCTTCAGCTTCTCGTA 808
| |||| ||||||||||||||||||||| |||||
Sbjct 862 CCTGTT-CATTCTTAATCTCTTCAGCTTGTCGTA 894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39333337101
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5