BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479067
Length=1994
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16130.1 | Symbols: ATROPGEF13, ROPGEF13, PIRF2 | RHO guanyl... 2516 0.0
AT3G16140.1 | Symbols: PSAH-1 | photosystem I subunit H-1 | chr... 424 2e-117
> AT3G16130.1 | Symbols: ATROPGEF13, ROPGEF13, PIRF2 | RHO guanyl-nucleotide
exchange factor 13 | chr3:5466246-5468774 FORWARD
LENGTH=1993
Length=1993
Score = 2516 bits (1362), Expect = 0.0
Identities = 1586/1690 (94%), Gaps = 32/1690 (2%)
Strand=Plus/Plus
Query 310 TTGAGGTTTCGTGGATTGCAAGCTAATTCATGTTATTTTGCATATGTTACAGAGA-AGGA 368
||||| || ||||||||||||||||| || ||||||||||||||||||||||| | |||
Sbjct 331 TTGAGATTCCGTGGATTGCAAGCTAAGTCGTGTTATTTTGCATATGTTACAGA-ATTGGA 389
Query 369 GCAGATGAAAGATAAGTTTGCGAAATTGCTTTTAGGAGAAGACATGTCAGGAGGAAGCAA 428
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 390 GCAGATGAAAGATAAGTTTGCAAAATTGCTTTTAGGAGAAGACATGTCAGGAGGGAGCAA 449
Query 429 AGGTGTTTCGTCAGCTTTGGCATTATCAAACGCAATCACAAATCTTTCTGCTTCTGCGTT 488
||| ||||| ||||| || ||||||||||||||||||||||||||| | |||||||||||
Sbjct 450 AGGCGTTTCTTCAGCGTTAGCATTATCAAACGCAATCACAAATCTTGCAGCTTCTGCGTT 509
Query 489 TGGAGAACTACGGCGTTTAGAGCCAATATCCGAGGATAGAAAAGAACGATGGAGAAGAGA 548
||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 510 TGGAGAAATACGGCGTTTAGAGGCAATATCCGAGGATAAAAAAGAACGATGGAGAAGAGA 569
Query 549 AATCGGATGGCTTCTCTCTGTTACTGATCATATAGTTGAATTCTCTCCAACACACCATAC 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 570 AATCGGATGGCTTCTCTCTGTTACTGATCATATAGTTGAATTCTCTCCAACACACCAAAC 629
Query 609 TAACGAGGATGGATCTTCCATGGAGGTAATGACTACAAAACAAAGAACAGATCTTGTCTC 668
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 630 TAACGAGGATGGATCTTCCATGGAGGTAATGACTACAAAACAAAGAACTGATCTTGTCTC 689
Query 669 CAACATTCCTGCTCTTAAGAAACTCGACGAAATGCTCCTCGATTGTCTTGATAAATAT-A 727
|||||||||| |||| ||||||||||| |||||||||||||||||||||||||||| | |
Sbjct 690 CAACATTCCTTCTCTAAAGAAACTCGATGAAATGCTCCTCGATTGTCTTGATAAAT-TCA 748
Query 728 AAGAACAGGATGAGTTTTACTACGTCACACCAGGTTCTCCGGAATCTGAAAACAGTAACT 787
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 749 AAGATCAGGATGAGTTTTACTACGTCACACCCGGTTCTCCGGAATCTGAAAACAGTAACT 808
Query 788 CGACCAGGAACGATGATAAATGGTGGCTTCCGATTGTTAAAGTTCCACCTAAAGGCTTAT 847
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 809 CGACCAGGAACGATGATAAATGGTGGCTTCCGATTGTAAAAGTTCCACCTAAAGGCTTAT 868
Query 848 CTGAAACGTTGAAAAGATTTCTACTGAGTCAGAA-AGAGTGTGTGAGCCAAGTGCTTAAT 906
| ||||| |||||||| ||| |||| ||||| || |||||||||| ||||||||||||||
Sbjct 869 CAGAAACTTTGAAAAGGTTTTTACTAAGTCA-AAGAGAGTGTGTGTGCCAAGTGCTTAAT 927
Query 907 TCCGCAATGGCCATAAACTCTCAAGTTCTTACTGAAATGGAGATCCCTGAGAGCTACATC 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 TCCGCAATGGCCATAAACTCTCAAGTTCTTACTGAAATGGAGATCCCTGAGAGCTACATC 987
Query 967 GACTCACTTCCTAAGAAAGGGAGAGCTAGTCTTGGAGACATGATCTATAGAATGATAACA 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 GACTCACTTCCTAAGAAAGGGAGAGCTAGTCTTGGAGACATGATCTATAGAATGATAACA 1047
Query 1027 TTAGAGATGTTTGATGCAGAGCAGTTCCTTCATGAAATGGATTTATCATCGGAGCACAAG 1086
||||||||||||||||||||||| || |||| |||||||||||||||||| |||||||||
Sbjct 1048 TTAGAGATGTTTGATGCAGAGCAATTTCTTCTTGAAATGGATTTATCATCTGAGCACAAG 1107
Query 1087 ATTCTTGATTTAAAGAACAAATTCGAAGCTTCGGTTGTGATATGGCAGAGAAAGATAGTG 1146
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1108 ATTCTTGATTTAAAGAACAAATTCGAAGCTTCGGTTGTTATATGGCAGAGAAAGATAGTG 1167
Query 1147 CAGATAGACAACAAGTCATCGTCTCCATGGAGTACGAATTTGAGCATGGATAAGAGACAA 1206
|| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1168 CAAATAGACAACAAGTCATCGTCTCCGTGGAGTACGAATTTGAGTATGGATAAGAGACAA 1227
Query 1207 CAGTTAGAAGAAAGAGCAGCAACCATTTTGCAACTTATTAAACAAGAATTCCCAGGGATC 1266
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1228 CAGTTAGAAGAAAGAGCAGCAACCATTTTGCAACTTATCAAACAAGAATTCCCAGGGATC 1287
Query 1267 TCTCAATCTACACTTGACATTAGCAAGATTCAATTCAACAAAGATATAGGTTTAGCTATA 1326
|||||||| ||||||||||| ||||||||||||||||||| ||||||||| |||||||||
Sbjct 1288 TCTCAATCCACACTTGACATCAGCAAGATTCAATTCAACAGAGATATAGGGTTAGCTATA 1347
Query 1327 GTGGAGAGTTACTCGAGAATTCTTGAGAGCTTGGCGCACACGATAATGTCAAGAATAGAA 1386
||||||||||| |||||||||||||| |||||||| |||||| |||||||||||||||||
Sbjct 1348 GTGGAGAGTTATTCGAGAATTCTTGAAAGCTTGGCTCACACGGTAATGTCAAGAATAGAA 1407
Query 1387 GATGTTCTTGAAGCTGATCAGCTAACACAAAACCCTGAACTCGCGGTTTGTAAGAGACAT 1446
|||||||||||||||||||||||||||||||||||||| |||||| | ||||||| |||
Sbjct 1408 GATGTTCTTGAAGCTGATCAGCTAACACAAAACCCTGAGCTCGCGATGTGTAAGATCCAT 1467
Query 1447 ATAGTGAAGGAAACAGAGAGTCCAGAGAAGGAAGAAGAACCAAACTTTTGTCTTTTAGAG 1506
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1468 ATAGTGAAGGAAACAGAGAGTCCAGAGAAGGAAGAAGAGCCAAATTTTTGTCTTTTAGAA 1527
Query 1507 GAGAGACCGAAAAAGCAGAAGCCTACCATTTCACTATCTGAGGTAATGCAATGGAATATC 1566
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1528 GATAGACCTAAAAAGCAGAAGCCTACCATTTCACTATCTGAGGTAATGCAATGGAATATC 1587
Query 1567 GAAACCAATGAACCGAAGAAAGAAAAGAGCGATGCACCGATAAAAGATTCAGGCAAGAAA 1626
|||||||||||||||| ||||||||||||||| || | || | |
Sbjct 1588 GAAACCAATGAACCGAGGAAAGAAAAGAGCGA--CA---A-----GA---A---A----- 1626
Query 1627 CTGTTGACCAGAGTGTCAAGCATGATCATGGCTAACAACAAGAAGCCTACTTCTTATCTT 1686
|| || |||||||||||||||||||||||| |||||||||||||| |||||| |||||
Sbjct 1627 CTTTTAACCAGAGTGTCAAGCATGATCATGTCTAACAACAAGAAGACTACTT---ATCTT 1683
Query 1687 GAATCTCTTGGAACCACAAGAAGTCCAACCGCGGGGCGATACTCTTGaaaaaaaaaaGAT 1746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1684 GAATCTCTTGGAACCACAAGAAGTCCAACCGCGGGGCGATACTCTTGAAAAAAAAAATAT 1743
Query 1747 TTCTTTTGTAAAATTAGGGGAAGAAAAAACGTTTCAAATGTAACTGATAAACAGAATATA 1806
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1744 TTCTTTTGTAAAATTAGGGGAAGAAAAAACGTTTCAAATGTAACAGATAAACAGAATATA 1803
Query 1807 CATAAAATCACTTAAA-GGGTTTGAAGTATTGAGAAATGTTGATGAGTTTTAGAAGGAAG 1865
|||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1804 CATAAAATTACTTAAAAGGGTTTGCAGTATTGAGAAATGTTGATGAGTTTTAGAAGGAAG 1863
Query 1866 AAGAGAA-GGTAACATGAATATAAATCAGAGCTTGCCACGAGGACCGAGCTTAGGCTTCT 1924
||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||| ||
Sbjct 1864 AAGAGAAAGGTAACATGAATATAGATCAGAGCTTGCCGCGAGGACCGAGCTTAGGCGGCT 1923
Query 1925 CCTGAGGACCTCTCTTGATGGGAAGAACCTCGCCGGTGGAGGTAGCGCTGACATAAGTAA 1984
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1924 CCTGAGGACCTCTCTTGATGGGAAGAACTTCGCCGGTAGAGGTAGCGCTGACATAAGTAA 1983
Query 1985 GCAAAGAGCC 1994
||||||||||
Sbjct 1984 GCAAAGAGCC 1993
Score = 326 bits (176), Expect = 7e-88
Identities = 248/280 (89%), Gaps = 15/280 (5%)
Strand=Plus/Plus
Query 1 ATGGTGAAAGCGGGTGAGCGAGAACAAG-AAAGCTACAAGTCTAAATTGTTAGATTTAGA 59
|||||||||||| ||||| |||||| | |||| |||||| | |||||||| ||||||||
Sbjct 1 ATGGTGAAAGCGAGTGAGAAAGAACATGAAAAG-TACAAGCCGAAATTGTTCGATTTAGA 59
Query 60 GACCGTGAAGAAGAAGAACTCATCTTCAAGGCATTTCAAGAGATGGAACTCAGATTCCGC 119
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GAACGTGAAGAAGAAGAACTCATCTTCAAGGCATTTCAAGAGATGGAACTCAGATTCCGC 119
Query 120 CTTGAGAATTGAAGATCCAGACATTGATGATGGCACTGTGTTCAGGAAAACGGCGACCTC 179
||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||
Sbjct 120 CTTGAGAATTGAAGATCCAGACATTGATGATGGCACTGTTTTCAAGAAAACCGCGACCTC 179
Query 180 AAGCATCCAACCAATTCTACCGCTTC-GACCGCCTCTTGTTAAGGATGAGGCA-CCTCAG 237
|||||||| |||||||||||| ||| | || | | | | ||||| || ||||||
Sbjct 180 CAGCATCCAGCCAATTCTACCGGTTCTG---GC-TAT-G----G-ATGAG-CAACCTCAG 228
Query 238 CCGCGTGAAGCAACTGATGAAGAATTACAGCAAGATTCAG 277
||||||||||||||||||||||||| |||| |||||||||
Sbjct 229 CCGCGTGAAGCAACTGATGAAGAATCACAGAAAGATTCAG 268
> AT3G16140.1 | Symbols: PSAH-1 | photosystem I subunit H-1 | chr3:5468509-5469481
REVERSE LENGTH=665
Length=665
Score = 424 bits (229), Expect = 2e-117
Identities = 254/266 (95%), Gaps = 2/266 (1%)
Strand=Plus/Minus
Query 1731 TTGaaaaaaaaaaGATTTCTTTTGTAAAATTAGGGGAAGAAAAAACGTTTCAAATGTAAC 1790
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 TTGAAAAAAAAAATATTTCTTTTGTAAAATTAGGGGAAGAAAAAACGTTTCAAATGTAAC 606
Query 1791 TGATAAACAGAATATACATAAAATCACTTAAA-GGGTTTGAAGTATTGAGAAATGTTGAT 1849
||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||
Sbjct 605 AGATAAACAGAATATACATAAAATTACTTAAAAGGGTTTGCAGTATTGAGAAATGTTGAT 546
Query 1850 GAGTTTTAGAAGGAAGAAGAGAA-GGTAACATGAATATAAATCAGAGCTTGCCACGAGGA 1908
||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||
Sbjct 545 GAGTTTTAGAAGGAAGAAGAGAAAGGTAACATGAATATAGATCAGAGCTTGCCGCGAGGA 486
Query 1909 CCGAGCTTAGGCTTCTCCTGAGGACCTCTCTTGATGGGAAGAACCTCGCCGGTGGAGGTA 1968
|||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 485 CCGAGCTTAGGCGGCTCCTGAGGACCTCTCTTGATGGGAAGAACTTCGCCGGTAGAGGTA 426
Query 1969 GCGCTGACATAAGTAAGCAAAGAGCC 1994
||||||||||||||||||||||||||
Sbjct 425 GCGCTGACATAAGTAAGCAAAGAGCC 400
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98794672560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5