BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479069
Length=1216
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16150.1 | Symbols: | N-terminal nucleophile aminohydrolase... 1807 0.0
> AT3G16150.1 | Symbols: | N-terminal nucleophile aminohydrolases
(Ntn hydrolases) superfamily protein | chr3:5471735-5473276
FORWARD LENGTH=1280
Length=1280
Score = 1807 bits (978), Expect = 0.0
Identities = 1154/1236 (93%), Gaps = 24/1236 (2%)
Strand=Plus/Plus
Query 1 CCATCATTCTCGGTTAAACTGTGAAACACATAAATAAAACAAAGAGAAAGAGATA-AA-A 58
||||||||||||||| ||||||||||||||||||||||||||||||||||||| | || |
Sbjct 1 CCATCATTCTCGGTTTAACTGTGAAACACATAAATAAAACAAAGAGAAAGAGAGAGAATA 60
Query 59 TGGGTGGGTGGGCAATCGCAGTACACGGTGGTGCCGGAATCGACCCTAATCTTCCGGCGG 118
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 TGGGTGGGTGGGCAATCGCAGTACACGGTGGTGCCGGTATCGACCCTAATCTTCCGGCGG 120
Query 119 AGAGACAAGAAGAGGCGAAACAGCTTTTGACTCGTTGTCTTAACCTCGGCATAGTAGCTT 178
|||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||||||
Sbjct 121 AGAGACAAGAAGAGGCTAAACAGCTTTTAACTCGTTGTCTCAACCTCGGCATAATAGCTT 180
Query 179 TGCGTTCAAATATCTCCGCCATTGACGTCGTTGAGCTCGTCATTAGAGAATTGGAGACGG 238
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGCGTTCCAATGTCTCCGCCATTGACGTCGTTGAGCTCGTCATTAGAGAATTGGAGACGG 240
Query 239 ATCCTCTGTTTAATTCAGGCCGTGGATCTGCTTTGACGGAGAAAGGAACGGTGGAGATGG 298
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 241 ATCCTCTGTTTAATTCAGGCCGTGGATCTGCTTTGACGGAAAAAGGAACGGTTGAGATGG 300
Query 299 AAGCTAGCATAATGGACGGTACGAAGAGACGATGCGGTGCCGTTTCGGGGATAACCACCG 358
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGCTAGCATTATGGACGGTACGAAGAGACGATGCGGTGCCGTTTCGGGGATAACCACCG 360
Query 359 TGAAGAATCCAATATCTCTTGCTCGTCTCGTCATGGACAAATCTCCCCACTCTTACCTTG 418
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGAAAAATCCTATATCTCTTGCTCGTCTCGTCATGGACAAATCTCCCCACTCTTACCTTG 420
Query 419 CTTTCTCTGGTGCAGAGGATTTCGCCCGCAAACAGGGAGTTGAAATTGTGGACAATGAGT 478
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 421 CTTTCTCAGGTGCAGAGGATTTCGCCCGCAAACAGGGAGTTGAAATTGTGGACAACGAGT 480
Query 479 ACTTCGTCACGGACGACAACGTAGGAATGCTCAAGTTGGCCAAGGAAGCTAACTCCATCT 538
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACTTTGTCACGGACGACAACGTAGGAATGCTCAAGTTGGCCAAGGAAGCTAACTCCATCT 540
Query 539 TGTTTGATTACCGGATCCCGCCGATGGGATGTGCCGGTGCAGCCGCAACCGACAGTCCAA 598
|||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||
Sbjct 541 TGTTTGATTACCGGATTCCGCCGATGGGATGTGCCGGTGCAGCTGCGACCGACAGTCCAA 600
Query 599 TCCAAATGAACGGTCTTCCGATCAGCATTTACGCACCGGAGACAGT-GGGATGCGTTGTG 657
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 601 TCCAAATGAACGGTCTTCCGATCAGCATTTACGCACCGGAGACAGTCGGG-TGCGTTGTG 659
Query 658 GTTGACGGGGAAGGACGGTGTGCCGCCGGGACATCCACTGGTGGTTTGATGAACAAGATG 717
||||||||| |||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 660 GTTGACGGGAAAGGACATTGTGCCGCCGGGACATCCACGGGTGGTTTAATGAACAAGATG 719
Query 718 ATGGGGAGGATCGGAGACTCGCCGCTGATAGGAGCTGGGACGTATGCGTCGGACTTTTGT 777
||||| ||||| || |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 720 ATGGGAAGGATTGGTGACTCGCCGCTGATAGGAGCCGGGACGTATGCGTCGGAGTTTTGT 779
Query 778 GGGGTGTCGTGTACCGGAGAAGGAGAAGCCATCATAAGAGCGACGCTAGCTCGTGATGTG 837
|| ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 780 GGTGTGTCGTGTACCGGAGAAGGAGAAGCCATTATAAGAGCAACCCTAGCTCGTGATGTG 839
Query 838 TCAGCTGTTATGGAGTACAAAGGACTTAACCTCCAAGAAGCGGTTGATTACGTCATCAAG 897
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TCAGCTGTTATGGAGTATAAAGGACTTAACCTCCAAGAAGCGGTTGATTACGTCATCAAG 899
Query 898 CATAGACTCGATGAAGGGTTCGCTGGACTCATTGCTGTGTCGAATAAAGGAGAGGTGGTT 957
||| |||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 900 CATCGACTTGACGAAGGGTTCGCTGGACTCATTGCTGTCTCGAATAAAGGAGAGGTGGTT 959
Query 958 TGCGGTTTTAACTCTAATGGGATGTTCAGGGGATGTGCAACGGAGGATGGGTTCATGGAG 1017
|| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 960 TGTGGTTTTAACTCTAATGGGATGTTCAGGGGATGTGCAACTGAGGATGGATTCATGGAG 1019
Query 1018 GTTGCTATTTGGGAGTGAGAAATATTTTTAGATTAAGAAAATGTATTA---GTATTTGAT 1074
|||||||||||||||||||||||||||| ||||||||||||||| ||| |||||| ||
Sbjct 1020 GTTGCTATTTGGGAGTGAGAAATATTTT-AGATTAAGAAAATGTCTTACTAGTATTTAAT 1078
Query 1075 TAGTCATGGCTCTATTAATTTGGTTATTCATTATAATAAATCTGGAGTAGTAAATTTAGA 1134
|||||| |||||||||||||||||||||||||| ||||| |||||| |||||||||||
Sbjct 1079 CAGTCATCGCTCTATTAATTTGGTTATTCATTATCATAAAGCTGGAGGAGTAAATTTAGT 1138
Query 1135 TAT-T--T---C----GT--TAT-T-GATTTGTGCTTAATGTGGTTTCTAATTGTTAATT 1180
||| | | | || ||| | |||||||| |||||| |||||| ||| |||| ||
Sbjct 1139 TATGTCGTTATCACCAGTCCTATATTGATTTGTGTTTAATGCGGTTTCAAATGGTTAGTT 1198
Query 1181 CGTGTTTAAAAAATCGTTGATCTGTTTCAGCTTCAT 1216
||||||||||| | |||||||||| |||||| |||
Sbjct 1199 CGTGTTTAAAAT-T-GTTGATCTGTCTCAGCTCCAT 1232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59738648550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5