BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479087
Length=1472
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16350.1 | Symbols: | Homeodomain-like superfamily protein ... 2037 0.0
> AT3G16350.1 | Symbols: | Homeodomain-like superfamily protein
| chr3:5547718-5549660 FORWARD LENGTH=1537
Length=1537
Score = 2037 bits (1103), Expect = 0.0
Identities = 1384/1510 (92%), Gaps = 58/1510 (4%)
Strand=Plus/Plus
Query 1 TTGTGTATACGCTAATCTTATTTTC-ACGAAGCATTTATTACCAAAAGGTTCTCTCtttt 59
|||||||||| | ||||||| ||| ||||| ||||||| |||||||||||||||| |||
Sbjct 30 TTGTGTATACACAAATCTTA--TTCAACGAATCATTTATCACCAAAAGGTTCTCTC-TTT 86
Query 60 tttGTTTGTTTGTGTCTTGTGTGAATGACTCGTCGGTGTTCGCATTGTAGTAACAATGGG 119
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 87 TTTGTTTGTTTCTGTCTTGTGTGAATGACTCGTCGGTGTTCGCATTGTAGCAACAATGGG 146
Query 120 CACAATTCACGCACGTGTCCAACGCGTGGTGGTGGCACGTGCGGTGGAAGTGGC------ 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 147 CACAATTCACGCACGTGTCCAACGCGTGGTGGTGGCACGTGCGGTGGAAGTGGCGGAGGA 206
Query 174 GGAGGA------GGT---GGAGGTTCTTGTTCCTCCTCCGCCGTGAAGTTATTCGGCGTG 224
|||||| ||| ||||| ||| ||||||||||||||||||||||||| || |||
Sbjct 207 GGAGGAGGTGGTGGTGGAGGAGGGTCTGGTTCCTCCTCCGCCGTGAAGTTATTTGGTGTG 266
Query 225 AGGTTAACGGATGGGTCGATTATTAAAAAGAGTGCGAGTATGGGTAATCTCTCTGCATTG 284
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 267 AGGTTAACGGATGGCTCGATTATTAAAAAGAGTGCGAGTATGGGTAATCTCTCGGCATTG 326
Query 285 GCTGTTGCGGCGGCGGCGGCAACGCACCACCGTTTATCTCCGTCGTCTCCTCTAGCGACG 344
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 327 GCTGTTGCGGCGGCGGCGGCAACGCACCACCGTTTATCTCCGTCGTCTCCTCTGGCGACG 386
Query 345 TCAAATCTCAATGATTCGCCGTTATCGGATCATGCCCGATACTCTAATTTGCATCATAAT 404
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 TCAAATCTTAATGATTCGCCGTTATCGGATCATGCCCGATACTCTAATTTGCATCATAAT 446
Query 405 GAAGGGTATTTATCTGATGATCCTGCTCATGGTTCTGGGTCTAGTCACCGTCGTGGAGAG 464
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 447 GAAGGGTATTTATCTGATGATCCTGCTCATGGTTCTGGGTCTAGTCACCGTCGTGGTGAG 506
Query 465 AGGAAGAGAGGTGTTCCTTGGACTGAGGAGGAACACAGGCTATTCTTAGTTGGTCTTCAG 524
|||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||||
Sbjct 507 AGGAAGAGAGGTGTTCCTTGGACTGAAGAGGAACATAGACTATTCTTAGTCGGTCTTCAG 566
Query 525 AAACTCGGGAAAGGAGATTGGCGCGGTATTTCGAGAAACTATGTAACTTCAAGAACTCCT 584
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 567 AAACTCGGGAAAGGAGATTGGCGCGGTATTTCGAGAAACTATGTAACGTCAAGAACTCCT 626
Query 585 ACACAAGTGGCTAGTCATGCTCAGAAGTATTTCATTCGCCATACTAGTTCCAGCCGTAGG 644
||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||| |||
Sbjct 627 ACACAAGTGGCTAGTCATGCTCAAAAGTATTTTATTCGACATACTAGTTCAAGCCGCAGG 686
Query 645 AAAAGACGGTCTAGCCTATTCGACATGGTTACCGATGAGATGGTAACTGATTCATCGCCA 704
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 687 AAAAGACGGTCTAGCCTCTTCGACATGGTTACAGATGAGATGGTAACCGATTCATCGCCA 746
Query 705 ACGGAAGACCAGAGTCATCAGACCTTAAACCATTTCTCTCCAAGCAAGGAACCTGAAAAC 764
|| | || |||| || |||||||||| || ||||||||||||||||||||||||
Sbjct 747 ACACAGGA--AGAG-CA---GACCTTAAACGGTTCCTCTCCAAGCAAGGAACCTGAAAAG 800
Query 765 AAAATCTACCTTCCTTCACTTGAGCTCTCTCTCAATAATACCACGGAATCTGAAGTGGTC 824
|||| |||||||||||||||||||||||| |||||||||||||| ||| |||||| ||||
Sbjct 801 AAAAGCTACCTTCCTTCACTTGAGCTCTCACTCAATAATACCACAGAAGCTGAAGAGGTC 860
Query 825 GTAGCCACGGCGCCACCACAGGAAAAAACTGAAGAAACTATAGAGCCATCAAACGGGGTT 884
|||||||||||||||| |||||||||| || ||||| ||||||| |||||||| || |||
Sbjct 861 GTAGCCACGGCGCCACGACAGGAAAAATCTCAAGAAGCTATAGAACCATCAAATGGTGTT 920
Query 885 TCACCAATGGTAGTCCCGGGCGGCTTCTTTCCTCCTTGTTTTCCAGTCACTTACACGATT 944
||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 921 TCACCAATGCTAGTCCCGGGTGGCTTCTTTCCTCCTTGTTTTCCAGTGACTTACACGATT 980
Query 945 TGGCTACCTGCGACTTCCACTTCACTTCATGGTACAGAACATGCCTTAGAA-GCTGAGAC 1003
||||| |||||| | | ||||||| || ||||||||||||||| || ||||||||
Sbjct 981 TGGCTCCCTGCG--T-C-ACTTCAC-----GGAACAGAACATGCCTTA-AACGCTGAGAC 1030
Query 1004 TTCTTCTCAGCAGCATCAGGTCCTAAAACCAAAACCTGGATTTGCTAAAGAACGTGTGAA 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 TTCTTCTCAGCAGCATCAGGTCCTAAAACCAAAACCTGGATTTGCTAAAGAACGTGTGAA 1090
Query 1064 CATGGACGAGCTGGTCGGTATGTCTCAGCTTAGCATAGGAATGGCGACAAGACACGAAAC 1123
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 CATGGACGAGTTGGTCGGTATGTCTCAGCTTAGCATAGGAATGGCGACAAGACACGAAAC 1150
Query 1124 CGAAACTTCCCCTTCCCCTCTATCTTTGAAACTAGAGCCCTCAAGGCCATCAGCGTTTCA 1183
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1151 CGAAACTTCCCCTTCCCCGCTATCTTTGAGACTAGAGCCCTCAAGGCCATCAGCGTTTCA 1210
Query 1184 CTCAAACGGCTCGGTTAATGGCGCAGATTTGAGTAAAGGCAACAGCGCGATTCAGGCGAT 1243
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1211 CTCGAATGGCTCGGTTAATGGTGCAGATTTGAGTAAAGGCAACAGCGCGATTCAGGCTAT 1270
Query 1244 CTGAAAAATCTTTGTTATTGTGTTAAAGAATGAAGAAGGAAGTCCCTGACCGGATTAAAT 1303
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1271 CTAAAAAATCTTTGTTATTGTGTTAAAGAATGAAGAAGGAAGACCCTGACCGGATTAAAC 1330
Query 1304 CAAAGGATGTTCCTGGTTTAGGACGAAACAATCCAAGCCATAAGCCATTAGAGAGaa-aa 1362
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1331 CAGAGGATGTTCCTGGTTTAGGACGAAACAAACCAAGCCATAAGCCATTAGAGAGAACAA 1390
Query 1363 --a---a-aa------------CAGAGCAAACTGTAACAATAGACTTACCAAACAGTCAA 1404
| | || |||||||||||||||||| |||||||||||||||||||
Sbjct 1391 TTACTTACAAAGGAAAAAAAAACAGAGCAAACTGTAACAA-AGACTTACCAAACAGTCAA 1449
Query 1405 A--CGCATTTCTCAGCATCACGTCATACTTACATAAGCTAAGCGTAATTTACAATTTTAC 1462
| | |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1450 AAACACATTTCTCAGCATCACGTCATACTTACATAAGATAAGCGTAACTTACAATTTTAC 1509
Query 1463 TCTTCATTTT 1472
|||||||||
Sbjct 1510 CCTTCATTTT 1519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72589988070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5