BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg479088

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G16360.2 | Symbols: AHP4 | HPT phosphotransmitter 4 | chr3:5...   616    7e-176


> AT3G16360.2 | Symbols: AHP4 | HPT phosphotransmitter 4 | chr3:5554258-5555603 
FORWARD LENGTH=616
Length=616

 Score =  616 bits (333),  Expect = 7e-176
 Identities = 343/348 (99%), Gaps = 0/348 (0%)
 Strand=Plus/Plus

Query  30   CAGGGATATCTCGACGAACAATTCATGGAGCTAGAAGAGCTCCAAGATGATGCAAACCCT  89
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  136  CAGGGATATCTCGACGAACAATTCATGGAGTTAGAAGAGCTCCAAGATGATGCAAACCCT  195

Query  90   AATTTTGTTGAAGAAGTTTCCGCATTGTACTTCAAAGATTCAGCTCGATTAATCAATAAC  149
            |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct  196  AATTTTGTTGAAGAAGTTTCCGCATTATACTTCAAAGATTCAGCTCGGTTAATCAATAAC  255

Query  150  ATTGACCAAGCTTTGGAAAGAGGATCATTTGATTTCAATCGGCTGGATAGTTACATGCAT  209
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  256  ATTGACCAAGCTTTGGAAAGAGGATCATTTGATTTCAATCGGCTGGATAGTTACATGCAT  315

Query  210  CAGTTTAAGGGAAGCAGCACGAGCATTGGGGCAAGTAAAGTGAAAGCTGAATGCACTACG  269
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  316  CAGTTTAAGGGAAGCAGCACGAGCATTGGGGCAAGTAAAGTGAAAGCTGAATGCACTACG  375

Query  270  TTTAGGGAATACTGCAGAGCTGGAAATGCTGAAGGATGCTTGAGGACTTTCCAGCAACTG  329
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  376  TTTAGGGAATACTGCAGAGCTGGAAATGCGGAAGGATGCTTGAGGACTTTCCAGCAACTG  435

Query  330  AAGAAAGAACACTCAACGTTGCGAAAGAAGCTTGAACATTATTTCCAG  377
            ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  436  AAGAAAGAACACTCAACGTTGAGAAAGAAGCTTGAACATTATTTCCAG  483



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19554154361


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5