BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479115
Length=1655
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16520.3 | Symbols: UGT88A1 | UDP-glucosyl transferase 88A1 ... 2481 0.0
> AT3G16520.3 | Symbols: UGT88A1 | UDP-glucosyl transferase 88A1
| chr3:5619128-5620873 REVERSE LENGTH=1656
Length=1656
Score = 2481 bits (1343), Expect = 0.0
Identities = 1557/1661 (94%), Gaps = 11/1661 (1%)
Strand=Plus/Plus
Query 1 CCATTTCTTGCAACAAATCTCACAAACCTTAGGAAGAGCCATGGGAGAAGAAGCTATAGT 60
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 CCAATTCTTGCAACAAATCTCACAAACCTTAGGAAGAGCCATGGGTGAAGAAGCTATAGT 60
Query 61 TCTGTATCCAGCACCACCAATAGGTCACTTAGTGTCCATGGTTGAGTTAGGCAAAATCAT 120
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 61 TCTGTATCCTGCACCACCAATAGGTCACTTAGTGTCCATGGTTGAGTTAGGTAAAACCAT 120
Query 121 CCTCTCCAAAAATCCATCTCTATCCATCCACATCATCTTAGTTCCACCGCCTTATCAGCC 180
|||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 121 CCTCTCCAAAAACCCATCTCTCTCCATCCACATTATCTTAGTTCCACCGCCTTATCAGCC 180
Query 181 GGAATCAACCGCCACTTACATCTCCTCCGTCTCCTCCTCCTTCCCTTCAATAACCTTCCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGAATCAACCGCCACTTACATCTCCTCCGTCTCCTCCTCCTTCCCTTCAATAACCTTCCA 240
Query 241 CCATCTTCCCGCCGTCACACCGTACTCTTCCTCATCCACCTCTCGCCACCACCACGAGTC 300
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 241 CCATCTTCCCGCCGTCACACCGTACTCCTCCTCCTCCACCTCTCGCCACCACCACGAATC 300
Query 301 ACTCCTCCTAGAAATCATCTGTTTTAGCAACCCAAGTGTCCACCGAACCCTTTTCTCACT 360
||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 TCTCCTCCTAGAGATCCTCTGTTTTAGCAACCCAAGTGTCCACCGAACTCTTTTCTCACT 360
Query 361 CTCTCGGAACTTCAACATCCGAGCAATGATCATCGATTTCTTCTGCACCGCGGTTATAGA 420
||||||||| ||||| |||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 361 CTCTCGGAATTTCAATGTCCGAGCAATGATCATCGATTTCTTCTGCACCGCCGTTTTAGA 420
Query 421 CATCACCGCTGACTTCACCTTCCCGGTTTACTACTTCTTCACCTCTGGAGCCGCATGCCT 480
|||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||| ||
Sbjct 421 CATCACCGCTGACTTCACGTTCCCGGTTTACTTCTTCTACACCTCTGGAGCCGCATGTCT 480
Query 481 CGCCTTTTCCTTCTATCTCCCGATCATCCACGAAACAACCCAGGGAAAAAACCTCAAAGA 540
||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||
Sbjct 481 CGCCTTTTCCTTCTATCTCCCGACCATCGACGAAACAACCCCCGGAAAAAACCTCAAAGA 540
Query 541 CATTCCTACACTTCATATCCCCGGCGTTCCTCCGATGAAGGGCTCTGATATGCCCAAGGC 600
|||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 541 CATTCCTACAGTTCATATCCCCGGCGTTCCTCCGATGAAGGGCTCCGATATGCCTAAGGC 600
Query 601 GGTGCTTGAACGAGACGATGAGGTCTACGATGTTTTTATAGTGTTCGGTAAACAGCTCTC 660
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 601 GGTGCTCGAACGAGACGATGAGGTCTACGATGTTTTTATAATGTTCGGTAAACAGCTCTC 660
Query 661 AAAATCTTCAGGGATTATTGTTAATACGTTTGATGCTTTAGAGCACAGAGCCATTAAGGC 720
|| || |||||||||||| | |||||||||||||||||||| |||||||||| |||||
Sbjct 661 GAAGTCGTCAGGGATTATTATCAATACGTTTGATGCTTTAGAAAACAGAGCCATCAAGGC 720
Query 721 CATAACAGAGGAGCTCTGTTTTCGCAATATTTATCCGATTGGACCGCTCATTGTAAACGG 780
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 721 CATAACAGAGGAGCTCTGTTTTCGCAATATTTATCCAATTGGACCGCTCATTGTAAACGG 780
Query 781 AAGAACCGAAGATAAAAACGATAACGAGGCAGTTTCTTGTCTAAATTGGCTCGATTCGCA 840
||||| |||||||| |||||| ||| |||||||||||||||| |||||||| ||||||||
Sbjct 781 AAGAATCGAAGATAGAAACGACAACAAGGCAGTTTCTTGTCTCAATTGGCTGGATTCGCA 840
Query 841 GCCGGAAAAGAGTGTTGTGTTCCTCTGTTTTGGAAGCTTGGGTTTGTTCTCAAAAGAACA 900
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 841 GCCGGAAAAGAGTGTTGTGTTTCTCTGTTTTGGAAGCTTAGGTTTGTTCTCAAAAGAACA 900
Query 901 GTTGAAAGAGATTGCTGTTGGTTTAGAGAAAAGTGGGCAGAGATTCTTGTGGGTGGTCCG 960
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GGTGATAGAGATTGCTGTTGGTTTAGAGAAAAGTGGGCAGAGATTCTTGTGGGTGGTCCG 960
Query 961 TAATCCACCTGAGTTAGAAAATACAGAACTGGATTTGAAATCACTCTTACCAGAAGGATT 1020
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 961 TAATCCACCCGAGTTAGAAAAGACAGAACTGGATTTGAAATCACTCTTACCAGAAGGATT 1020
Query 1021 CTTAAGCCGGACCGAAAACAGAGGAATGGTCATCAAATCATGGGCTCCGCAAGTTCCGGT 1080
||||||||| |||||| ||| ||| |||||| | ||||||||||||||||||||||||||
Sbjct 1021 CTTAAGCCGAACCGAAGACAAAGGGATGGTCGTGAAATCATGGGCTCCGCAAGTTCCGGT 1080
Query 1081 TCTGAATCATAAAGCAGTCGGCGGATTTGTCACTCATTGCGGTTGGAATTCAATTCTCGA 1140
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 1081 TCTGAATCATAAAGCAGTCGGGGGATTCGTCACTCATTGCGGTTGGAATTCAATTCTTGA 1140
Query 1141 AGCTGTTTGCGCAGGTGTGCCGATGGTGGCTTGGCCGTTGTACGCTGAGCAAAGGTTTAA 1200
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1141 AGCTGTTTGTGCTGGTGTGCCGATGGTGGCTTGGCCGTTGTACGCTGAGCAGAGGTTTAA 1200
Query 1201 TAGAGTGATGATTGTGGAGGAGATCAAGATTGCGATTTCGATGAATGAATCAGAGACGGG 1260
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TAGAGTGATGATTGTGGATGAGATCAAGATTGCGATTTCGATGAATGAATCAGAGACGGG 1260
Query 1261 TTTCGTGAGCTCTACAGAGGTGGAGAAACGAGTCCAAGAGTTAATTGGGGAGTCTCCAGT 1320
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||
Sbjct 1261 TTTCGTGAGCTCTACAGAGGTGGAGAAACGAGTCCAAGAGATAATTGGGGAGTGTCCGGT 1320
Query 1321 TAGGGAGAGAACCATGGCCATGAAGAACGCAGCCGAATTAGCCTTGACAGAAACTGGTTC 1380
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TAGGGAGCGAACCATGGCTATGAAGAACGCAGCCGAATTAGCCTTGACAGAAACTGGTTC 1380
Query 1381 GTCTCATACCGCATTAACTACTTTACTCCAATCTTGGAGCCCAAAGTGATCGTTGAAATT 1440
|||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 1381 GTCTCATACCGCATTAACTACTTTACTCCAGTCGTGGAGCCCAAAGTGATCTTTGAAATT 1440
Query 1441 AAGTGTTGTGA-CAATTAGTAACTTTGTAGTCTCTCAGAATCATGTCTATGGGG-TTATT 1498
|||| ||| | |||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1441 AAGTCTTGC-ATCAATTAATAACTTTGTAGTCTCTCAGAATCATGTCTTTGGGGGTTATT 1499
Query 1499 TGTTTAACTAGTTCAAAGTTATGTTCTCTGAGACCACAGAAAGAAACAAACA-TTTCATG 1557
|||| |||||||||||||||||| |||||||||| |||| |||| || || ||| ||
Sbjct 1500 CGTTTTACTAGTTCAAAGTTATGT-CTCTGAGACCGCAGATGGAAAGAA-CAATTT-ATA 1556
Query 1558 TCGTTTGTCGTAGTCCCGTGTGC-TTTCGTTCTTCATTGAACTCAGCAAATCGAACCATG 1616
||||||||||| |||| |||||| ||| |||| ||||||||||||||||| |||||||||
Sbjct 1557 TCGTTTGTCGTTGTCCTGTGTGCGTTT-GTTCATCATTGAACTCAGCAAACCGAACCATG 1615
Query 1617 CTGATA--TCACACTGAAAATTCTTGCAGTAAATTTTGGCT 1655
| |||| |||||||||||||| ||||| ||||||||||||
Sbjct 1616 CCGATACATCACACTGAAAATTTTTGCAATAAATTTTGGCT 1656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81776687805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5