BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479119
Length=2040
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16560.1 | Symbols: | Protein phosphatase 2C family protein... 3140 0.0
> AT3G16560.1 | Symbols: | Protein phosphatase 2C family protein
| chr3:5635596-5638482 REVERSE LENGTH=2166
Length=2166
Score = 3140 bits (1700), Expect = 0.0
Identities = 1947/2060 (95%), Gaps = 41/2060 (2%)
Strand=Plus/Plus
Query 1 AAAGACTACCAAAATTAGCAAAC-AAAAACATTCACTCGTTAACTCTTCTCCTCCATCCA 59
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 AAACACTACCAAAATTAGCAAACAAAAAACATTCACTCGTTAACTCTTCTCCTCCATCCA 60
Query 60 ATTTCattttctctcactcatttttattcgtcgtcgtctttttcgtctcctctgatttgt 119
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 ATTTCACTTTCTCTCACTCATTTTTATTCGTCGTCG------TCGTCTCCTCTGATTTGT 114
Query 120 tc-tttctctctaaa-----ttcgcttcttctcacttctccg-a--ttc---tct-tttG 166
|| ||| |||||||| |||||||||||||| |||| || | ||| ||| |||
Sbjct 115 TCTTTTTTCTCTAAATTCGCTTCGCTTCTTCTCAGTTCTACGAATCTTCGATTCTCTTT- 173
Query 167 GGTTTT-TCCATTCCCGTATACGTTAAGTGTTTCAGAACATTTCAAGAAAGTG-a-aaaa 223
|||||| ||||| ||||||||| |||| |||||||| |||||||||| | ||||
Sbjct 174 GGTTTTCTCCATCCCCGTATAC-------GTTTAAGAACATTGCAAGAAAGTGAAGAAAA 226
Query 224 aaaaTGCAGGAAGGGACTGATCCTTATGGTGAGATTGAGATAAGTTTTGGTTATCAGTGC 283
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 227 AAAATGCAGGAAGGGACTGATCCGTATGGTGAGATTGAGATAAGTTTTGGTTATCAATGC 286
Query 284 AATAATAAGAAGAAGATAGGGATCCCTGAAGATAACATTGCTGATGGTCGTGAGGTTCTT 343
|||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 287 AATAAT---AAGAAGATAGGAATCCCTGAAGATAAAATTGCTGATGGTCGTGAGGTTCTT 343
Query 344 GGTGGGTTTAGGCTTCATAAGACAAGCAGTTTCTCTTGTTTATCAGGAGCTGCTTTAAGC 403
|||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 344 GGTGGGTTTAGGCTACAAAAGACTAGCAGTTTCTCTTGTTTATCAGGAGCTGCTTTAAGT 403
Query 404 GGAAACCCGACTTTAGCCAATACTAATATCTGCAATGGAGTGATTGGTTCTGAGATATTG 463
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 404 GGAAACCCCACTTTAGCCAATACTAATATCTGCAATGGAGTCATTGGTTCTGAGATATTG 463
Query 464 CCGTCTCTGGATTCTCCTAAATCTTTCAGGAAAGTTCCTTCTTCGCCTGCGCTTTCGAAG 523
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 464 CCGTCTCTGGATTCTCCGAAATCTTTCAGGAAAGTTCCGTCTTCGCCTGCGCTTTCGAAG 523
Query 524 CTTGATATACTCTCTCCTTCTCTCCATGGAAGTATGGTCAGTCTAAGCTGTAGCTCGTCT 583
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 524 CTTGATATACTCTCTCCTTCTCTCCATGGAAGTATGGTGAGTCTAAGCTGCAGCTCGTCT 583
Query 584 ACTAGCCCGAGTCCTCCTGAGCCAGAGTCTTGTTACTTGACGTCAATGAGTTCTCCTTCT 643
||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 584 ACTAGTCCGAGTCCTCCTGAGCCTGAATCTTGTTACTTGACGTCAATGAGTTCTCCTTCT 643
Query 644 TCTGTTAATGAAGGGTTTCTTCTCTCTGCTATGGAAGTTCAAGTTGCGGGTGGTGCTGCA 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 TCTGTTAATGAAGGGTTTCTTCTCTCTGCTATGGAAGTTCAAGTTGCGGGTGGTGCTGCA 703
Query 704 GGGGAAGATAGGGTTCAAGCTGTTTGCTCTGAGGAGAATGGTTGGTTGTTTTGCGCTATT 763
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 GGGGAAGATAGAGTTCAAGCTGTTTGCTCTGAGGAGAATGGTTGGTTGTTTTGCGCTATC 763
Query 764 TATGATGGATTTAATGGAAGAGATGCTGCTGATTTCTTGGCTTGTACTTTGTATGAGTCC 823
||||||||||| || |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 764 TATGATGGATTCAACGGAAGAGATGCTGCTGATTTCTTGGCATGTACTTTATATGAGTCC 823
Query 824 ATTGTGTTTCATCTTCAGTTGCTTGATCGTCAAATGAAGCAAACTAAGTCCGATGATGAT 883
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 824 ATTGTGTTTCATCTTCAGTTGCTTGATCGTCAAATGAAGCAAACAAAGTCCGATGATGAT 883
Query 884 GGCGAAAAACTGGAATTGTTATCAAATATAAGTAAAATAGATTACTCTTCCACTGATTTG 943
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 884 GGCGAAAAGTTGGAATTGTTATCAAATATAAGTAATGTAGATTACTCTTCCACTGATTTG 943
Query 944 TTCAGGCAAGGAGTGCTAGATTGCTTAAACCGTGCGCTTTTTCAGGCGGAAACCGATTTC 1003
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 944 TTCAGGCAAGGAGTACTAGATTGCTTGAACCGTGCGCTTTTTCAGGCGGAAACCGATTTC 1003
Query 1004 CTAAGGATGGTTGAGCAAGAAATGGAAGAAAGACCGGATTTAGTATCAGTTGGATCTTGC 1063
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1004 CTAAGGATGGTTGAGCAAGAAATGGAAGAAAGACCGGATTTAGTATCCGTTGGATCTTGT 1063
Query 1064 GTTTTGGTCACTCTCCTTGTCGGGAAGGATCTATACGTCCTTAATCTAGGTGATAGCAGA 1123
||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 1064 GTTTTGGTCACTCTCCTGGTTGGGAAGGATCTATACGTCCTTAATCTTGGTGATAGCAGA 1123
Query 1124 GCTGTTCTAGCGACATACAAGGGTAATAAGAAGCTGCAAGCTGTTCAGCTCACAGAGGAT 1183
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1124 GCTGTTCTAGCGACCTACAATGGTAATAAGAAGCTGCAAGCTGTTCAGCTCACAGAGGAT 1183
Query 1184 CACACAGTTGATAACGAAGTTGAAGAAGCTAGACTCTTAAGTGAACATCTTGATGATCCT 1243
|| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1184 CATACAGTTGATAACGAAGTCGAAGAAGCTAGACTCTTAAGTGAGCATCTTGATGATCCT 1243
Query 1244 AAAATCGTTATTGGTGGGAAAATCAAAGGAAAGCTTAAAGTTACTCGTGCTCTCGGAGTT 1303
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244 AAGATCGTTATTGGTGGGAAAATCAAAGGAAAGCTTAAAGTTACTCGTGCTCTCGGAGTT 1303
Query 1304 GGTTACTTGAAGAAGGAGAAACTAAACGATGCACTCATGGGAATTCTCCGCGTTCGTAAC 1363
|||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 1304 GGTTACTTGAAGAAGGAGAAACTAAATGATGCACTCATGGGGATCCTCCGCGTTCGTAAC 1363
Query 1364 CTTTTGAGCCCGCCTTACGTTTCAGTGGAACCATCGATGAGAGTTCACAAGATAACGGAA 1423
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 CTTTTGAGCCCGCCTTATGTTTCAGTGGAACCATCGATGAGAGTTCACAAGATAACGGAA 1423
Query 1424 TCAGATCACTTTGTGATAGTTGCAAGCGATGGTTTGTTTGATTTCTTCAGCAACGAGGAA 1483
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1424 TCAGATCACTTTGTTATAGTTGCAAGCGATGGTTTGTTTGATTTCTTCAGCAACGAGGAA 1483
Query 1484 GCGATTGAGCTTGTCCATTCCTTCATTTCTAGTAATCCTTCTGGTGACCCCGCAAAGTTT 1543
||||||| ||| |||||||||||| |||||||||||||||||||||| || |||||||||
Sbjct 1484 GCGATTGGGCTCGTCCATTCCTTCGTTTCTAGTAATCCTTCTGGTGATCCAGCAAAGTTT 1543
Query 1544 CTGCTTGAACGTCTTGTAGCTAAAGCTGCTGCTCGTGCTGGCTTTACTTTGGAAGAATTG 1603
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1544 CTGCTTGAACGTCTTGTAGCTAAAGCTGCTGCTCGTGCTGGCTTTACCTTGGAAGAATTG 1603
Query 1604 ACGAATGTTCCAGCTGGTAGGAGACGGAGATATCATGACGATGTGACTATAATGGTAATC 1663
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1604 ACGAATGTTCCGGCTGGTAGGAGAAGGAGATATCATGACGATGTGACTATAATGGTAATC 1663
Query 1664 ACTCTAGGTACCGATCAACGTACCTCAAAAGCTTCTACGTTCGTGTGATTTTGATGATGA 1723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1664 ACTCTAGGTACCGATCAACGTACCTCAAAAGCTTCTACGTTCGTGTGATTTTGATGATGA 1723
Query 1724 TGGCGATAAATGTTGGATTGGTAAAATTGTAATTAGTCTCACTGATCTTCTTT-AGACTT 1782
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1724 TGGCGACAAATGTTGGATTGGTAAAATTGTAATTAGTCTCACTGATCTTCTTTTAGACTT 1783
Query 1783 TGAAACTGATCATCAGTTTTTTCAATTCTTTGGAACTGGTATAATATTATTTCAGTGTAT 1842
|| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1784 TGGAACTGATCATCAGTTTTT-CAATTCTTTGGAACTGGTATAATATTATTTCA-TGTAT 1841
Query 1843 AGTCCGTATATATAT--CATTGTAGTAGTCTTAGTTGCGAGCCTAGAATTCATCAGTTTG 1900
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1842 AGTCCGTATATATATATCATTGTAGTAGTCTTAGTTGCGAGCCTAGAATTCATCAGTTTG 1901
Query 1901 TCTCAGCCTGAGTCATATGTTCTGtttttttttttttttAGGCCTTTTGGGTGTTTAGTC 1960
|||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| |
Sbjct 1902 TCTCAGCCTGAGTCATATGTTCTGTTTTTTATTTTTTTG-GGC-TTTTGGGTGTTTACTT 1959
Query 1961 GGTTTGGTTTATTACCTGGGATTGTAAGTTGTAACATAGACTGAATCGGTTTTGTCAATT 2020
||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1960 GGTTTGGTTTATTACCTTGGATTTTAAGTTCTAACATAGACTGAATCGGTTTTGTCAATG 2019
Query 2021 GGCTAACTACTAGTGAAATA 2040
||||||||||||||||||||
Sbjct 2020 GGCTAACTACTAGTGAAATA 2039
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101103897630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5