BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479120 Length=1111 Score E Sequences producing significant alignments: (Bits) Value AT3G16565.2 | Symbols: | alanine-tRNA ligases;nucleic acid bin... 1727 0.0 > AT3G16565.2 | Symbols: | alanine-tRNA ligases;nucleic acid binding;ligases, forming aminoacyl-tRNA and related compounds;nucleotide binding;ATP binding | chr3:5639839-5642737 REVERSE LENGTH=1139 Length=1139 Score = 1727 bits (935), Expect = 0.0 Identities = 1058/1117 (95%), Gaps = 10/1117 (1%) Strand=Plus/Plus Query 1 GTTCACCGCGACGAAGCCGTCGGAAATCGGAATCACCATGGATTTTCCTCCGACGAAGCT 60 ||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 26 GTTGACCGCGACGAATCCGTCGGAAACCGGAATCACCATGGATTTTCCTCCGACGAAGCT 85 Query 61 TGATTATCATGTAGACATGTTCAATCTTCAATCTCAATCCAGATTTATCTCCGTATTTAA 120 |||||||||||||||||||||||||||||| ||||| ||||||||| ||||| ||||||| Sbjct 86 TGATTATCATGTAGACATGTTCAATCTTCAGTCTCATTCCAGATTTCTCTCCTTATTTAA 145 Query 121 GGCGCAAGATGGGCGCATAGCTATAATACTGGACTCGACGGTGTTTCATCCACAAGGTGG 180 |||||||||||| ||||||||| ||||||| || || ||||||||||||||||||||||| Sbjct 146 GGCGCAAGATGGACGCATAGCTCTAATACTAGAATCAACGGTGTTTCATCCACAAGGTGG 205 Query 181 TGGCCAGCCGTCAGACACCGGTTTAATTGTTTTCTCCGGTTCGGATTTCAAATTTTCCGT 240 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 206 TGGCCAGCCGTCAGACACCGGTTTAATTGTTTTCTCCGGTTCGGATTTGAAATTTTCCGT 265 Query 241 TCAAGATGTTCGATCGAAAGACGGAATTGTTCTCCATTACGGAGTTTTCGAAGGTTCGAA 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 266 TCAAGATGTTCGATCGAAAGACGGAATTGTTCTCCATTACGGAGTTTTCGAAGGTTCGAA 325 Query 301 TCCTGAGAGTGGAATGGATATTGAGAAAGAGAAAGAAGTTTACTTAATTGTTGATGAATC 360 |||||| |||||||| |||| |||||||| ||||||||||||||||| |||||||||||| Sbjct 326 TCCTGAAAGTGGAATTGATAGTGAGAAAGGGAAAGAAGTTTACTTAACTGTTGATGAATC 385 Query 361 AAGGCGTAAACTCAATTCCAGGTTGCACTCAGGTGGACATTTGCTAGATTTGTGTATGCA 420 |||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||| Sbjct 386 AAGGCGTAAACTCAATTCCAGGTTGCACTCAGCTGGACACTTGCTAGATATGTGTATGCA 445 Query 421 GAAAGTTGGGTTAGGGCATTTGGAGCCTGGAAAAGGGTACCATTTTCCGGACGGTCCATT 480 ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || Sbjct 446 GAAAGTTGGGTTAGGACATTTGGAGCCTGGAAAAGGGTACCATTTTCCTGACGGTCCTTT 505 Query 481 TGTAGAATACAAAGGAAGCGTTCCACAAGG-TGAGATGGCA-GAGAAGCAGAAAGAGTTG 538 ||| ||||||||||||||||| |||| ||| ||| | || | |||||||||||||||| Sbjct 506 TGTGGAATACAAAGGAAGCGTCCCAC-AGGAGGAG-TTTCAGGTGAAGCAGAAAGAGTTG 563 Query 539 GAGGCAGAAGCTAATGACCTGATAACCAAAGGAGGAAAGGTTTATGCTGCTATATTACCC 598 |||||||||||||| || |||||| ||||||||||||||||||||||||||||||| ||| Sbjct 564 GAGGCAGAAGCTAACGAACTGATATCCAAAGGAGGAAAGGTTTATGCTGCTATATTGCCC 623 Query 599 TATGAAGAGGCATCTGTGCTCTGTGGTGGCAATCTTCCTGATTATATTTCCAAGGGCAGC 658 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 624 TATGAAGAGGCATCTGTGCTCTGTGGTGGCAGTCTTCCTGATTATATTTCCAAGGGCAGC 683 Query 659 ACTCCCCGGATCATAAAATTAGGTGACAGCCCCGGGTGTCCGTGTGGTGGAACCCATGTC 718 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 684 ACTCCCCGGATCATAAAATTAGGTGACAGCCCCGGGTGTCCATGTGGTGGAACCCATGTC 743 Query 719 TCCGATTTATCTGATATCAT-AGCCATGAAGGTCACACAGATGAGAACAAAGAAAGGAAT 777 ||| ||||||| |||||||| || ||||||| |||||||||||||||||||||||||||| Sbjct 744 TCCAATTTATCCGATATCATAAG-CATGAAGATCACACAGATGAGAACAAAGAAAGGAAT 802 Query 778 AACGAAAGTTTTCTACAGCATTGCATCTTGATACTCTTATGGGTTCCAGTTTCTATACGG 837 |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| Sbjct 803 GACGAAAGTTTTCTACACCATTGCATCTTGAAACTCTTATGGGTTCCAGTTTCTATACGG 862 Query 838 TAGATATACAATAAGTCAAGGAAGGGAATGATAGTGAGGACGACTGTTTTCATCAGTTGG 897 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 863 TAGATATACAATAAGTCAAGGAAGGGAATGATAGTGAGGACGACTGTTTTCATCAGTTGG 922 Query 898 CTTCAACAGCAAGCAGCTTCTCCTGTGC-TCAACAGCCATAAATTTGTATTTGTGGGTAT 956 |||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||| Sbjct 923 CTTCAACAGCAAGCAGCTTCTCCTGTGCCTCAACAGCCACAAATCAGTATTTGTGGGTAT 982 Query 957 TTATCAATCTCTTAAACGACTCTCTCTATCATTGATAAGTCGTATATGATAT--GATATT 1014 ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| Sbjct 983 TTATCAATCTCTTAAACGACTCTCTCTATTATTGATAAGTCGTATATGATATATGATATT 1042 Query 1015 GATGTGATATTATCTTCCACTCAGCCTCTTAATTAGTATTACTATATTGACTCTTTGGTA 1074 ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct 1043 GATGTGATATTTTCTTCCACTCAGCCTCTTAATTAGTATTAATATATTGACTCTT-GGTA 1101 Query 1075 TTGTAGAATCGTACCGGACATTTGGTCCTAGATTTTT 1111 ||||||||||||||||| ||||||||||||||||||| Sbjct 1102 TTGTAGAATCGTACCGGTCATTTGGTCCTAGATTTTT 1138 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54467591325 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5