BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479130 Length=870 Score E Sequences producing significant alignments: (Bits) Value AT3G16640.1 | Symbols: TCTP | translationally controlled tumor ... 1061 0.0 > AT3G16640.1 | Symbols: TCTP | translationally controlled tumor protein | chr3:5669373-5670842 REVERSE LENGTH=956 Length=956 Score = 1061 bits (574), Expect = 0.0 Identities = 741/817 (91%), Gaps = 29/817 (4%) Strand=Plus/Plus Query 1 CTCGTCGCTGCGTCTCTCTCCCGCAACCTTCAATTTTCGTTAATTCACATCCATCGgaga 60 ||||||||||||||||||||||||||||||| ||||||||| |||| |||||||| | Sbjct 31 CTCGTCGCTGCGTCTCTCTCCCGCAACCTTCGATTTTCGTTTATTCGCATCCATC---G- 86 Query 61 gagagagaTAAATAAATCAAATAAGCGACCATGTTGGTGTA-CACAGATCTTCTCACCGG 119 |||||||| ||| |||| |||||||||||||||||||||| || ||||||||||||||| Sbjct 87 GAGAGAGA-AAA-CAATC-AATAAGCGACCATGTTGGTGTACCA-AGATCTTCTCACCGG 142 Query 120 TGATGAGCTTCTGTCTGACTCTTTCCCTTACAAGGAGATTGAGAATGGAATTCTTTGGGA 179 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 143 TGATGAGCTTCTGTCTGACTCTTTCCCTTACAAGGAGATTGAGAATGGAATCCTCTGGGA 202 Query 180 AGTAGAAGGAAAGTGGGTTACTCTGGGAGCTGTAGATGTTAACATTGGTGCCAATCCATC 239 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 203 AGTAGAAGGAAAGTGGGTTACTGTGGGAGCTGTAGATGTTAACATTGGTGCCAATCCATC 262 Query 240 TGCTGAAGAAGGTGGTGAGGATGAGGGTGTTGATGACTCTGCTCAAAAGGTTGTTGACAT 299 |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| Sbjct 263 TGCTGAAGAAGGTGGTGAGGATGAAGGTGTTGATGACTCTACTCAAAAGGTTGTTGACAT 322 Query 300 TGTCGACACCTTCAGACTTCAGGAGCAACCAACTTATGACAAGAAGGGATTCGTCGCTTA 359 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 323 TGTCGACACCTTCAGACTTCAGGAGCAACCAACTTATGACAAGAAGGGATTCATCGCTTA 382 Query 360 TATTAAGAAATACATCAAGTCGTT-GACACCCAAGCTCAACGAAGAACAGCAGGAA-TCC 417 |||||||||||||| ||| | || |||||||||||||| ||||||| | || | || Sbjct 383 CATTAAGAAATACATTAAG-CTTTTGACACCCAAGCTCAGCGAAGAAGATCAAGCTGTC- 440 Query 418 TTCAAGAAGGGTATTGAGGGAGCTACCAAGTACCTT-CTCCCCAAGCTCAAAGACCTCCA 476 ||||||||||||||||||||||||||||||| || ||||||| ||||| ||| |||| Sbjct 441 TTCAAGAAGGGTATTGAGGGAGCTACCAAGTTT-TTGCTCCCCAGGCTCAGTGACTTCCA 499 Query 477 ATTCTTTGTTGGGGAGTCAATGCACGATGACAGCTCTTTGGTCTTTGCCTACTACAAGGA 536 |||||||||||||||| ||||| ||||||||| ||||||||||||| ||||||||||| Sbjct 500 ATTCTTTGTTGGGGAGGGTATGCATGATGACAGCACTTTGGTCTTTGCTTACTACAAGGA 559 Query 537 TGGTGCAACTAACCCAACATTTTTGTACTTCGCACATGGTTTGAAGGAGGTCAAGTGCTG 596 ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 560 GGGTTCAACTAACCCAACATTTTTGTACTTCGCTCATGGTTTGAAGGAGGTCAAGTGCTG 619 Query 597 AGAGAGAAGCTCTCTTTGGGTTACTCTGGTCGG-CGCAGCGACTCTCTAAGTTTATGTTT 655 |||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 620 AGAGAGAAGCTCTCGTTGGGTTACTGTGGTCGGTCGCAGCGACTCTCTAAGTTTATGTTT 679 Query 656 CTTTATATTGTC-TCGTGTTTCGTCGTC--CCC-TATTAAAATTACCTACCAGTTTGCTT 711 |||||||||||| | ||||||||||||| ||| |||||||||||||| ||||||| ||| Sbjct 680 CTTTATATTGTCCT-GTGTTTCGTCGTCGTCCCCTATTAAAATTACCTGCCAGTTTACTT 738 Query 712 TTGTCTCTTCTTCTCTCCTGTGTTGGAT--TTCTTTTAAGTTATTGAATCCG-AAAACAA 768 || ||||||||| | | |||||||||| |||| |||||||| | |||| |||| || Sbjct 739 TTCTCTCTTCTTGTTTTCTGTGTTGGAAGATTCTC--AAGTTATTTATTCCGCAAAA-AA 795 Query 769 CGGTTTATCAGTTT-CTATTAGTTGAATTTTGGTCGT 804 |||||||||| ||| | |||||||||||||||||||| Sbjct 796 CGGTTTATCA-TTTACAATTAGTTGAATTTTGGTCGT 831 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42447854215 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5