BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479146
Length=1330
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16800.2 | Symbols: | Protein phosphatase 2C family protein... 1945 0.0
AT5G27930.1 | Symbols: | Protein phosphatase 2C family protein... 104 2e-21
> AT3G16800.2 | Symbols: | Protein phosphatase 2C family protein
| chr3:5721020-5723185 FORWARD LENGTH=1473
Length=1473
Score = 1945 bits (1053), Expect = 0.0
Identities = 1246/1332 (94%), Gaps = 41/1332 (3%)
Strand=Plus/Plus
Query 1 TCGAAGGAGAAAAAGCGAAAGATGATGATGAGTCATAGAGACGACTCACCAGCTTATAAC 60
|||||||||| ||||||||||||||||||||||||||||||| | ||||||| |
Sbjct 1 TCGAAGGAGAGAAAGCGAAAGATGATGATGAGTCATAGAGACAATTCACCAG-------C 53
Query 61 TTATAAGTAGTAAATCCACCAAAAGG-AAATATATTCAACAGAGAAACTCC-ATCAAGAA 118
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 54 TTATAAGTAGTAAATCCACCAAAAGGAAAATATATTCAACAGAGAAACTCCGATCAAGAA 113
Query 119 TATTC--ACCAGATCATAGAAGAGGATCATAAGAGCAA-CAAAGAATTAATGGTGCTTTT 175
||||| | |||| | |||| | ||||||||||| || ||||| ||||||||||||
Sbjct 114 TATTCATATCAGA-GA-AGAAAAAGATCATAAGAG-AATCAAAG----AATGGTGCTTTT 166
Query 176 ACCAGCGTTTTTGGACGGATTTGCGAGAACCGTGTCGACGAAGAAAGGTAAAAATCTATC 235
||||||||||||||||||||| |||||||| || |||||||||||||||||||| |||||
Sbjct 167 ACCAGCGTTTTTGGACGGATTAGCGAGAACTGTATCGACGAAGAAAGGTAAAAAACTATC 226
Query 236 GGAAAATGAAGATGGAGGGAGAGAGATCGCAGAATCAATGATTAGAGATTCAAAGAAGAA 295
|||| |||||||||||||||||||||||||| |||| ||||||| |||||| ||||||||
Sbjct 227 GGAAGATGAAGATGGAGGGAGAGAGATCGCAAAATCGATGATTAAAGATTCGAAGAAGAA 286
Query 296 CTCGACTTTGATCGGTACTTCGGGCTTTGTTAGCTCCGAAAGTTCTAAGAGATTTACCTC 355
|||||| ||| |||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 287 CTCGACGTTGCTCGGTACTTCAGGCTTTGTTAGCTCCGAAAGTTCTAAGAGGTTTACCTC 346
Query 356 TATTTGTTCTAATAGAGGTGAGAAAGGAATCAACCAAGATCGTGCAACTGTTTGGGAGGG 415
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 347 TATTTGTTCTAATAGAGGTGAGAAAGGAATCAACCAAGATCGTGCAATTGTTTGGGAGGG 406
Query 416 ATTTGGGTGCCAAGAAGACATAACATTTTGTGGGATGTTTGATGGACATGGACCATGGGG 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 ATTTGGGTGCCAAGAAGACATAACATTTTGTGGGATGTTTGATGGACATGGACCATGGGG 466
Query 476 ACATGTGATAGCCAAAAGGGTAAAAAAGTCATTCCCAGCTTCTCTGCTTTGCCAGTGGCA 535
|||||||||||||||||| |||||||| ||||| ||| |||||||||||||||| |||||
Sbjct 467 ACATGTGATAGCCAAAAGAGTAAAAAAATCATTTCCATCTTCTCTGCTTTGCCAATGGCA 526
Query 536 ACAAACTCTTGCCTCCTTATCATCATCGCCGGAATGTTCCTCTCCGTTTGATCTTTGGAA 595
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 527 ACAAACTCTTGCCTCCTTATCATCCTCGCCGGAATGTTCCTCTCCGTTTGATCTTTGGAA 586
Query 596 GCAAGCTTGCCTGAAAACATTCTCCGTCATCGATCTTGATCTCAAGATCAGTCCTTCCAT 655
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 587 GCAAGCTTGCCTGAAAACATTCTCCATCATCGATCTTGATCTCAAGATCAGTCCTTCCAT 646
Query 656 TGATTCTTATTGCAGCGGCTGCACCGCTCTCACTGCTGTTTTGCAGGGCGATCATCTTGT 715
||||||||| || |||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 647 TGATTCTTACTGTAGCGGCTGCACCGCTCTCACCGCTGTTTTGCAGGGTGATCATCTCGT 706
Query 716 TATAGCAAATGCGGGTGACTCACGAGCAGTAATAGCAACAACTTCTGATGATGGAAACGG 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 TATAGCAAATGCGGGTGACTCACGAGCAGTAATAGCAACAACTTCTGATGATGGAAACGG 766
Query 776 TTTAGTGCCGGTTCAGCTCTCAGTAGACTTTAAACCGAACATCCCCGAGGAAGCAGAACG 835
|||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 767 TTTAGTCCCGGTTCAGCTCTCGGTAGACTTTAAACCAAACATTCCCGAGGAAGCAGAACG 826
Query 836 GATAAAACAATCGGATGGACGATTGTTCTGCCTAGACGATGAACCGGGAGTGTACCGGGT 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 GATAAAACAATCGGATGGACGATTGTTCTGCCTAGACGATGAACCGGGAGTGTACCGGGT 886
Query 896 AGGTATGCCTAATGGAGGATCACTCGGTTTAGCTGTTTCAAGAGCATTCGGAGATTACTG 955
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 887 GGGTATGCCTAATGGAGGATCACTCGGTTTAGCTGTTTCAAGAGCGTTTGGAGATTACTG 946
Query 956 CCTTAAAGACTTCGGTTTAGTCTCTGAACCGGAAGTAACATACCGAAAGATAACCGACAA 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 CCTTAAAGACTTCGGTTTAGTCTCTGAACCGGAAGTAACATACCGAAAGATAACCGACAA 1006
Query 1016 GGACCAGTTTCTAATCTTGGCCACCGATGGGATGTGGGATGTGATGACGAACAATGAGGC 1075
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1007 GGACCAGTTTCTAATCTTGGCCACCGATGGGATGTGGGATGTGATGACGAATAATGAGGC 1066
Query 1076 AGTGgagatagtaagaggagttaaagagagaagaaagagcgcaaagagattggtagagag 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 AGTGGAGATAGTAAGAGGAGTTAAAGAGAGAAGAAAGAGCGCAAAGAGATTGGTAGAGAG 1126
Query 1136 agCTGTGACGCTTTGGCGTAGGAAGAGAAGAAGCATCGCCATGGATGATATTTCTGTTCT 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 AGCTGTGACGCTTTGGCGTAGGAAGAGAAGAAGCATCGCCATGGATGATATTTCTGTTCT 1186
Query 1196 CTGTCTCTTCTTTCGTCCTTCTTAGT----CTCTG----A-C------AT-A-T-A---- 1233
|||||||||||||||||||||||||| |||| | | || | | |
Sbjct 1187 CTGTCTCTTCTTTCGTCCTTCTTAGTTTAACTCTTCTTTAACCTCTCTATTACTTATATA 1246
Query 1234 CATTTATCAATGTATTTTGAGCGTCAATGAACAACAAAAATGTGATATATATACATTTTT 1293
||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||
Sbjct 1247 CATTTATCAATGTATTTTGGGCGTCATTGAACAACAAAAATGTGATACATATACATTTTT 1306
Query 1294 ACATAGAATAAT 1305
||||||||||||
Sbjct 1307 ACATAGAATAAT 1318
> AT5G27930.1 | Symbols: | Protein phosphatase 2C family protein
| chr5:9958098-9960339 REVERSE LENGTH=1343
Length=1343
Score = 104 bits (56), Expect = 2e-21
Identities = 167/218 (77%), Gaps = 18/218 (8%)
Strand=Plus/Plus
Query 339 TCTAAGAGATTTA-CCTCTATTTGT-TCTAATA-GAGGTGAGAAAGGAATCAACCAAGAT 395
||||| | ||||| ||||| ||| | || || | | || || ||||| | || || |||
Sbjct 292 TCTAATA-ATTTAGCCTCTCTTT-TCTCCAA-ACGCGGCGAAAAAGGCGTTAATCAGGAT 348
Query 396 CGTGCAACT-GTTTGGGAGGGATTTGGGTGCCAAGAAGACATAA-CATTTTGTGGGATGT 453
|||| ||| |||||||||||||||||||||||||||||||| | | || || ||||| |
Sbjct 349 TGTGC-ACTCGTTTGGGAGGGATTTGGGTGCCAAGAAGACATGATC-TTCTGCGGGATAT 406
Query 454 TTGATGGACATGGACCATGGGGACA-TGTGATAGCCAAA-AGGGTAAAAAAGTCATTCCC 511
| |||||||| || |||||||| || | || |||||||| | | ||| ||| ||| | ||
Sbjct 407 TCGATGGACACGGTCCATGGGGTCACTATG-TAGCCAAACAAG-TAAGAAACTCAATGCC 464
Query 512 AGCT-TCTCTGCTTTGCCAGTGGCAACAA-ACTCTTGC 547
| || || |||||| | |||||| || | ||||||
Sbjct 465 TT-TGTCGCTTCTTTGCAACTGGCAA-AAGATTCTTGC 500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65461510680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5