BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479158
Length=1967
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16910.1 | Symbols: AAE7, ACN1 | acyl-activating enzyme 7 | ... 2800 0.0
> AT3G16910.1 | Symbols: AAE7, ACN1 | acyl-activating enzyme 7
| chr3:5773055-5775501 REVERSE LENGTH=1976
Length=1976
Score = 2800 bits (1516), Expect = 0.0
Identities = 1841/1992 (92%), Gaps = 46/1992 (2%)
Strand=Plus/Plus
Query 1 CAACGTATTCGTGACTTTGTGATTGGATTCTCCACTCA---CTCCAGATTTGAATAAACA 57
|||||| || |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 3 CAACGTGTTTGTGACTTTGTGATTGGATTCTCCACTCACTGCTCCAGATTTGAATAAACA 62
Query 58 CAACCCAAACAAATCGAGAGAGAGAAGTCAGATATGGCGGCAACACCGGCGACGAAATGG 117
||||| ||||||||| ||||| ||||||||||||||| || ||||| |||
Sbjct 63 CAACCTAAACAAATC----GAGAG-AGTCAGATATGGCGG---CA------ACGAAGTGG 108
Query 118 CGTGACATCGATGATCTTCCTAAGATTCCGGCCAACTACACGGCTTTGACGCCGCTTTGG 177
|||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 109 CGTGACATCGATGATCTTCCCAAGATTCCGGCCAACTACACGGCGTTGACTCCGCTTTGG 168
Query 178 TTCCTTGATAGGGCTG-CGATGGTTCACCCGACTAGAAAATCTGTGATTCACGGATCCCG 236
|||||||||||||||| || ||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 169 TTCCTTGATAGGGCTGCCG-TGGTTCATCCGACCAGAAAATCTGTGATTCACGGATCGCG 227
Query 237 AGAGTACACGTGGCGACAGACTTATGACCGGTGTCGCCGTCTCGCCTCCGCTCTCGCCGA 296
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 228 AGAGTACACGTGGCGCCAGACTTATGACCGGTGTCGCCGACTCGCCTCCGCTCTCGCCGA 287
Query 297 TCGATCAATCGGCCCCGGTTCCACGGTGGCTATTATTGCACCGAACATTCCAGCAATGTA 356
|||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 288 TCGATCAATCGGTCCCGGTTCAACGGTGGCTATTATTGCACCTAACATCCCAGCAATGTA 347
Query 357 CGAAGCTCATTTTGGAGTACCAATGTGTGGAGCCGTCCTGAATTGTGTCAACATCCGTCT 416
|||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 348 CGAAGCTCATTTCGGAGTACCAATGTGTGGAGCTGTTCTGAATTGTGTCAACATCCGTCT 407
Query 417 CAATG-CCCAGACAGTCGCTTTTCTTCTTAGTCACTCGCAGAGCTCTGTAATAATGGTGG 475
||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 408 CAATGCCCCA-ACAGTCGCTTTTCTTCTTAGTCACTCGCAGAGCTCTGTTATAATGGTGG 466
Query 476 ATCAAGAGTTCTTTACTCTAGCAGAGGATTCTTTGAGACTTATGGAGGAGAAAGCCGGAA 535
|||| |||||||||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 467 ATCAGGAGTTCTTTACTCTGGCTGAGGATTCTTTGAGACTTATGGAGGAGAAAGCTGGAA 526
Query 536 GCAGCTTCAAACGCCCACTTTTGATTGTCATAGGTGATCACACCTGTCCTCCTGAGTCAC 595
| |||||||||||||| ||||| || ||||| ||||||||||||||| ||||||||||||
Sbjct 527 GTAGCTTCAAACGCCCGCTTTTAATCGTCATTGGTGATCACACCTGTGCTCCTGAGTCAC 586
Query 596 TTAACATTGCTTTGTCGAAAGGAGC-AGTCGAATACGAGGATTTTCTGGCAACTGGTGAC 654
||||| ||||||||||| ||||| | | ||||| ||||||||||| ||||| || ||
Sbjct 587 TTAACCGGGCTTTGTCGAAGGGAGCTA-TAGAATATGAGGATTTTCTTGCAACCGGAGAT 645
Query 655 CCTAATTATCCGTGGCAGCCACCAGCTGACGAGTGGCAGAGCATCGCTCTTGGTTACACC 714
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 646 CCAAATTATCCGTGGCAGCCACCAGCTGATGAGTGGCAGAGCATCGCTCTTGGTTATACC 705
Query 715 TCGGGAACAACCGCTAGCCCGAAAGGAGTGGTGCTTCATCATCGAGGCGCATACATAATG 774
||||||||||| ||||| ||||||||||||||||||||||||||||| || || ||||||
Sbjct 706 TCGGGAACAACTGCTAGTCCGAAAGGAGTGGTGCTTCATCATCGAGGTGCGTATATAATG 765
Query 775 GCTCTGAGCAATCCTCTCATTTGGGGGATGCAAGAAGGTTCTGTTTACTTGTGGACTCTC 834
||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 766 GCTTTGAGCAATCCTCTCATTTGGGGGATGCAAGATGGTGCTGTTTACTTGTGGACTCTC 825
Query 835 CCGATGTTCCATTGCAACGGTTGGTGTTTCCCTTGGTCCCTTGCTGTGCTCTCCGGTACA 894
|| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 826 CCTATGTTTCATTGCAACGGTTGGTGTTTCCCTTGGTCCCTTGCTGTGCTCTCTGGTACA 885
Query 895 AGTATCTGTCTCCGTCAGGTCT-CGGCAAAGGAAGTTTATTCAAAAATAGCCAAATACAA 953
|| ||||||||||||||||| | |||| |||||||| ||||||| ||||||||||||||
Sbjct 886 AGCATCTGTCTCCGTCAGGT-TACGGCGAAGGAAGTGTATTCAATGATAGCCAAATACAA 944
Query 954 GGTAACCCATTTCTGTGCAGCGCCTGTGGTCCTCAACACTATTGTCAATGCTCCTAAAGA 1013
|||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 945 GGTAACTCATTTCTGTGCAGCTCCTGTGGTCCTCAACGCTATTGTCAATGCTCCTAAAGA 1004
Query 1014 AGACACTATCCTTCCTCTTCCCCATACAGTCCATGTCATGACCGCAGGAGCTGCTCCTCC 1073
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1005 AGACACTATCCTTCCTCTTCCCCATACAGTCCATGTCATGACAGCAGGAGCTGCTCCTCC 1064
Query 1074 ACCTTCTGTTCTCTTCTCCATGAACCAGAAGGGCTTCCGAGTCGCTCACACCTATGGGCT 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 ACCTTCTGTTCTCTTCTCCATGAACCAGAAGGGCTTCCGAGTCGCTCACACCTATGGGCT 1124
Query 1134 TTCTGAGACTTATGGTCCTTCCACGGTATGCGCTTGGAAACCCGAGTGGGATTCCCTCCC 1193
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1125 TTCCGAGACTTATGGTCCTTCCACCGTATGCGCTTGGAAACCCGAGTGGGATTCCCTCCC 1184
Query 1194 TCCTGAGACGCAGGCCAAACTCAATGCCCGCCAAGGTGTCCGCTATACTGGCATGGAGCA 1253
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1185 TCCTGAGACGCAGGCCAAGCTCAATGCTCGCCAAGGTGTCCGCTATACTGGCATGGAGCA 1244
Query 1254 GCTTGACGTCATTGACACTCAGACCGGAAAACCTGTCCCCGCAGATGGAAAAACTGCTGG 1313
|||||| ||||||||||||||||||||||||||||| || |||||||||||||| || ||
Sbjct 1245 GCTTGATGTCATTGACACTCAGACCGGAAAACCTGTTCCTGCAGATGGAAAAACCGCAGG 1304
Query 1314 AGAGATTGTTTTCCGAGGGAATATGGTGATGAAAGGCTATCTAAAGAATCCAGAAGCTAA 1373
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1305 AGAAATTGTTTTCCGAGGGAATATGGTGATGAAAGGCTATCTAAAGAATCCGGAAGCGAA 1364
Query 1374 CAAAGAGACGTTTGCTGGCGGGTGGTTCCACTCGGGAGATATTGCAGTGAAACATCCAGA 1433
||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1365 CAAAGAGACATTTGCTGGTGGGTGGTTCCACTCGGGGGATATTGCAGTGAAACACCCAGA 1424
Query 1434 CAACTATATCGAGATCAAGGACAGGTCAAAGGACATTATAATCTCTGGTGGTGAGAATAT 1493
|||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||
Sbjct 1425 CAACTATATCGAGATCAAGGACAGGTCAAAGGACGTTATAATCTCTGGGGGCGAGAATAT 1484
Query 1494 CAGTAGTGTCGAAGTCGAAAACGTAGTGTACCATCACCCAGCTGTTCTTGAAGCCTCTGT 1553
||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1485 CAGCAGTGTCGAAGTCGAAAACGTAGTGTACCATCACCCCGCGGTTCTTGAAGCCTCTGT 1544
Query 1554 TGTGGCCAGGCCAGACGAGCGGTGGCAAGAATCTCCTTGTGCGTTTGTGACTCTAAAGAG 1613
|||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 1545 TGTGGCCAGGCCAGACGAGCGGTGGCAAGAATCTCCGTGTGCGTTTGTGACACTTAAGAG 1604
Query 1614 CGGCTACGAGAAGCACGACCAGAATAAGTTGGCTCAAGATATAATGAGATTCTGCCTGGA 1673
|| ||||||||||| |||||||||||||||||||| |||||||||| |||||||| |||
Sbjct 1605 CGATTACGAGAAGCATGACCAGAATAAGTTGGCTCAGGATATAATGAAATTCTGCCGGGA 1664
Query 1674 GAAGCTTCCGGCATATTGGGTCCCAAAGTCAGTGGTGTTTGGGCCGTTACCAAAGACAGC 1733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 GAAGCTTCCGGCATATTGGGTCCCAAAGTCAGTGGTGTTTGGGCCGTTACCAAAGACAGC 1724
Query 1734 AACTGGAAAAATTCAGAAGCATATTCTGAGGACTAAGGCCAAAGAGATGGGACCAGTACC 1793
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1725 AACTGGAAAAATTCAGAAGCATATTCTGAGGACCAAGGCCAAAGAGATGGGACCAGTACC 1784
Query 1794 AAGAAGCAGATTATAGGAAGTGACA----T-------CA---TTATGAAAATAATGTGTT 1839
||||||||| ||||||||||||| | | || || |||||||||||||||
Sbjct 1785 AAGAAGCAGGTTATAGGAAGTGATAAAGCTTTAAGAACAACATTTTGAAAATAATGTGTT 1844
Query 1840 GTATGTTTT-GTGGAACTTTGCCTTGTGTA-AAACTTTTAAATGATAACAGAAAATTTTC 1897
||||||||| | ||||||||||||||||| ||||||| ||||||||||||||||| |||
Sbjct 1845 GTATGTTTTTGCGGAACTTTGCCTTGTGTGTAAACTTTCAAATGATAACAGAAAATATTC 1904
Query 1898 At-ttt-tttGGTCAACGCTTTCATTTTGTTTATAAATCGTTTACTCTTGATAAATAACT 1955
| ||| ||| |||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1905 -TCTTTATTT--TCAACGCTTTCATTGTGTTTATAAATCGTTTACTCTTGATTAATAACA 1961
Query 1956 GCGATAAAGATT 1967
||||||||||||
Sbjct 1962 GCGATAAAGATT 1973
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97439257845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5