BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479172
Length=2050
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17040.1 | Symbols: HCF107 | high chlorophyll fluorescent 10... 3232 0.0
> AT3G17040.1 | Symbols: HCF107 | high chlorophyll fluorescent
107 | chr3:5809266-5812678 REVERSE LENGTH=2144
Length=2144
Score = 3232 bits (1750), Expect = 0.0
Identities = 1954/2053 (95%), Gaps = 11/2053 (1%)
Strand=Plus/Plus
Query 1 AAAGCTCACAAACGGTTTTATCAGTTAACGCTTTTCTGAACAATGCActtcttcttcgtg 60
|||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||
Sbjct 32 AAAGCTCACAAACGGTTTTATCAGTTAAAGCTTTTTTAAACAATGCACTTCTTCTTCGTG 91
Query 61 ccgacttcttcgtcttcatctccttctccggccaatacttcttcattctctctATTGTTT 120
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 92 CCGAATTCTTCGTCTTCATCTCCTTCTCCGGCCAATACTTCTTCATTCTCGCTATCGTTT 151
Query 121 CTCGCTCCTTCTCAAATTCCTGAGAATCTCTGTAAATCACCGGCGAAGATCCATATCGGA 180
||| || | ||||||||||||||||||||||||| |||||| |||| ||||| ||||||
Sbjct 152 CTCACT-C--CTCAAATTCCTGAGAATCTCTGTAAGTCACCGACGAAAATCCACATCGGA 208
Query 181 ACTCATGGAATCTCCGGTAAATCGTTTCTCACACATCCTACGTTCTCATCTAAGAACACG 240
|||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||
Sbjct 209 ACTCATGGAATCTCCGGTCAATCGTTTCTCAGTCATCCTACTTTCTCATCTAAGAACACG 268
Query 241 TCTCTGTATGCAGTCGTCGACAGGTCTTCTTCAGGTGTATTTTCGTCGCAAAATGAATCT 300
| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 269 TATCTGTATGCAGTCGTCGACAGGTCTTCTTCAGGTGTATTTTCGCCGCAAAAGGAATCT 328
Query 301 GCCAATGGCGAAGGAGGGGAATCTAACAC--A-GAGGGATTATTAGTAGTTCGACGGCCG 357
||||||||||| |||| |||||||||||| | |||||| ||||||||||||||||||||
Sbjct 329 GCCAATGGCGAGGGAGAGGAATCTAACACGGAGGAGGGAGTATTAGTAGTTCGACGGCCG 388
Query 358 TCGTTGGAGAATTCTGATAAGGAATCTAGTGAGGAAGAGGCAAAAAAGTATCCAGCGAGG 417
| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 389 TTGTTGGAGAATTCCGATAAGGAATCTAGTGAGGAAGAGGGAAAAAAGTATCCAGCGAGG 448
Query 418 ATCGATGCTGGTCTGAGTAATATAGCTAAGAAGATGCCGATATTTGAGCCGGAGAGATCG 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 ATCGATGCTGGTCTGAGTAATATAGCTAAGAAGATGCCGATATTTGAGCCGGAGAGATCG 508
Query 478 GAGTCGTCATCGTCGA-CGTCCGCCGCCGCTGCTGCAAGGGCTCAAGAGAGGCCGCTTGC 536
|| ||||| ||||| | | || ||||| ||||||||||| ||||||||||| ||||||||
Sbjct 509 GAATCGTCGTCGTC-ATCTTCAGCCGCTGCTGCTGCAAGAGCTCAAGAGAGACCGCTTGC 567
Query 537 CGTGAATTTGGACTTATCTCTGTACAAAGCAAAGGTTTTGGCGAGGAATTTCAGATACAA 596
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 568 GGTGAATTTGGACTTGTCTCTGTACAAAGCAAAGGTTTTGGCGAGAAATTTCAGATACAA 627
Query 597 AGACGCCGAGAAGATTCTGGAGAAGTGCATAGCTTACTGGCCGGAGGATGGGAGACCGTA 656
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 628 AGACGCCGAGAAGATTCTAGAGAAGTGCATAGCTTACTGGCCGGAGGATGGGAGACCGTA 687
Query 657 CGTGGCATTGGGGAAGATACTAAGCAAACAATCCAAGTTAGCCGAAGCTCGAATCGTGTA 716
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 688 CGTGGCATTGGGGAAGATACTAAGCAAACAATCCAAGTTAGCTGAAGCTCGAATCCTGTA 747
Query 717 TGAGAATGGGTGTCAATCTACACAAGGAGAGAATGCATACATTTGGCAGTGTTGGGCTGT 776
||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 748 TGAAAAAGGGTGTCAATCTACACAAGGAGAGAATTCATACATTTGGCAGTGTTGGGCTGT 807
Query 777 CCTGGAAAACAGATTGGGAAATGTAAGAAGAGCCAGAGAATTGTTTGATGCAGCTACGGT 836
|||||||||||| ||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 808 CCTGGAAAACAGGTTGGGAAATGTAAGAAGAGCCAGGGAGTTGTTTGATGCAGCCACGGT 867
Query 837 GGCTGACAAGAAGCATGTAGCAGCCTGGCATGGATGGGCAAACTTGGAGATAAAACAAGG 896
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 868 GGCTGACAAGAAGCATGTAGCAGCCTGGCATGGATGGGCAAACCTGGAGATAAAACAAGG 927
Query 897 AAATATAAGTAAAGCGAGGAATCTGCTAGCCAAAGGCCTCAAGTTTTGTGGCCGTAACGA 956
||||||||||||||| |||||||| ||||||||||||||||||||||||||| | |||||
Sbjct 928 AAATATAAGTAAAGCAAGGAATCTTCTAGCCAAAGGCCTCAAGTTTTGTGGCAGAAACGA 987
Query 957 GTATATCTACCAAACACTTGCCTTGTTGGAGGCCAAAGCTGCCCGGTATGAACAGGCAAG 1016
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 988 GTATATCTACCAAACACTTGCCTTGTTGGAGGCCAAAGCTGGCCGGTATGAACAGGCAAG 1047
Query 1017 GTACCTGTTCAAGCAGGCCACCATATGCAATTCGAA-GAGCTGCGCCAGTTGGTTGGCAT 1075
|||||||||||||||||| || ||||||||||| || ||| || ||||||||||||||||
Sbjct 1048 GTACCTGTTCAAGCAGGCGACTATATGCAATTC-AAGGAGTTGTGCCAGTTGGTTGGCAT 1106
Query 1076 GGGCACAGTTGGAGATACAGCAGGAAAGATACCCAGCTGCTAGAAAGCTTTTTGAGAAAG 1135
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 GGGCACAGTTGGAAATACAGCAGGAAAGATACCCAGCTGCTAGAAAGCTTTTTGAGAAAG 1166
Query 1136 CTGTCCAGGCAAGCCCCAAGAATAGGTTTGCGTGGCACGTATGGGGGGTGTTTGAAGCTG 1195
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1167 CTGTCCAGGCAAGCCCCAAGAATAGATTTGCGTGGCACGTATGGGGGGTGTTTGAAGCTG 1226
Query 1196 GAGTAGGTAATGTTGAGCGTGGAAGAAAGCTCTTGAAGATAGGTCATGCGCTAAATCCTA 1255
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1227 GAGTAGGTAATGTTGAGCGTGGAAGAAAGCTCCTGAAGATAGGTCATGCGCTAAATCCTA 1286
Query 1256 GAGACCCTGTTCTCCTTCAGTCTCTTGGCTTACTGGAGTACAAACATTCATCTGCTAATC 1315
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1287 GAGACCCTGTTCTCCTTCAGTCCCTTGGCTTACTGGAGTACAAACATTCATCTGCTAATC 1346
Query 1316 TTGCCCGGGCTTTACTAAGGAGAGCATCAGAGGTCGATCCTAGACATCAACCTGTTTGGA 1375
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1347 TTGCCCGGGCTTTACTAAGGAGAGCATCAGAGCTCGATCCTAGACATCAACCTGTTTGGA 1406
Query 1376 TTGCTTGGGGTTGGATGGAATGGAAAGAAGGAAACACAACAACAGCTAGAGAACTTTACC 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 TTGCTTGGGGTTGGATGGAATGGAAAGAAGGAAACACAACAACAGCTAGAGAACTTTACC 1466
Query 1436 AAAGAGCTCTCTCCATTGATGCAAATACCGAAAGTGCTGCTCGTTGTCTACAGGCATGGG 1495
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||
Sbjct 1467 AAAGAGCTCTCTCCATTGATGCAAATACCGAAAGTGCTTCTCGCTGTCTACAGGCGTGGG 1526
Query 1496 GAGTTCTCGAGCAGAGAGCAGGAAACTTATCAGCAGCAAGAAGATTATTTAGATCTTCAT 1555
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1527 GAGTTCTCGAGCAGAGAGCAGGAAACTTATCAGCAGCAAGAAGATTATTCAGATCTTCAT 1586
Query 1556 TGAACATTAACTCACAAAGCTACGTTACGTGGATGACATGGGCACAACTTGAGGAAGATC 1615
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1587 TGAACATTAACTCACAAAGCTACGTTACATGGATGACATGGGCACAACTTGAGGAAGATC 1646
Query 1616 AAGGAGACTCCGAACGTGCTGAAGAAATCCGTAACCTCTATTTCCAACAACGCACAGAGG 1675
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1647 AAGGAGACACCGAACGTGCTGAAGAAATCCGTAACCTCTATTTTCAACAACGCACAGAGG 1706
Query 1676 TCGTTGATGATGCTTCGTGGGTCACAGGATTCTTGGATATCATTGACCCGGCTTTAGACA 1735
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1707 TTGTTGATGATGCTTCGTGGGTCACAGGATTCTTGGATATTATTGACCCGGCTTTAGACA 1766
Query 1736 CCGTTAAAAGGCTTTTGAACTTTGGTCAAAACAATGACAACAACAGGTTAACTACTACTC 1795
||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1767 CCGTTAAAAGGCTCTTGAACTTTGGTCAGAACAATGACAACAACAGATTAACTACTACTC 1826
Query 1796 TTAGAAACATGAATGGAACCAAAGATAGCCAAACCAATCAGCAACCCGAGAGCTCAGTGG 1855
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||| | ||
Sbjct 1827 TTAGAAACATGAATAGAACCAAAGATAGCCAATCCAATCAGCAACCCGAGAGCTCTGCGG 1886
Query 1856 GACGCGAGGACACTGAAACTGGGAGCGGATTTAACCTCGATGCGTTTTTACGCGAGAAGC 1915
|||||||||||| ||||||||||||||| ||||||||||||| ||||||||| |||||
Sbjct 1887 GACGCGAGGACATTGAAACTGGGAGCGGGTTTAACCTCGATGTATTTTTACGCTCGAAGC 1946
Query 1916 TGTCGTTGGATCCTTTGAAGCTGGACGTTAACCTTGATTCTAAGAAGTTAGAGAGATTCA 1975
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1947 TGTCGTTGGATCCTTTGAAGCTGGACGTTAATCTTGATTCTAAGAGGTTAGAGAGATTCA 2006
Query 1976 CTAGAGGGAGAATAAATGGTGCTTGAAAAAACATGAGGGGATATTTATTGAGGCAGTGTA 2035
||||||| ||||||||||||||||||||||| | ||||| |||||||||||||| |||||
Sbjct 2007 CTAGAGGAAGAATAAATGGTGCTTGAAAAAATAAGAGGG-ATATTTATTGAGGCGGTGTA 2065
Query 2036 AAGATAAAGGGTC 2048
||||| |||||||
Sbjct 2066 AAGATGAAGGGTC 2078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101605903080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5